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The map label for this gene is yrdC [C]

Identifier: 197117703

GI number: 197117703

Start: 1517984

End: 1518592

Strand: Direct

Name: yrdC [C]

Synonym: Gbem_1315

Alternate gene names: 197117703

Gene position: 1517984-1518592 (Clockwise)

Preceding gene: 197117702

Following gene: 197117704

Centisome position: 32.89

GC content: 59.93

Gene sequence:

>609_bases
ATGCTCCTGGAAATAAATCCCGACAATCCGCAGCCGCGGCTGGTAGCCAAGGTGGTGGAGATACTGAAAAACGGAGGCGT
GGTTGCCTACCCGACCGACACCACCTACGGCATCGGCTGCAGCATCTTCAGCAAGAAGGGAATCGAGCGGATCTACCAGG
TCAAACAGCGCGACCGCAAGAAACCCTTTTCCTTCATCTGCTCGGACATATCCGAGATCTCGCGCTACGCCAGGGTCTCC
AACTACGCCTTCAAACAGCTGCGCCGGCTGCTGCCTGGCCCGTACACCTTCGTCCTGGAGGCGAACAGCGTGGTGCCGGA
CCTGGTCACGACCAAGCAGAGAACGGTCGGCATCCGCATGCCCGACAACAACATCTGCCTTGCCATAGTGAAGGAGTTGG
GCCACCCCATCGTCACCACCAGCGCCAACCTCTCCGGAGAAGACCCTATTGGCAATCCCTGGCAGGTCGAGCACGAACTC
GGGAAACTCCTGGATCTCGTGGTCGACGGCGGCGACCTCTCCGCCGACGTTAGTTCCGTGGTAAGCCTCATCGGCGACTC
TCCCGAACTCCTCAGGAAAGGGGTAGGGGACGTGAGCTGGTGCGAATGA

Upstream 100 bases:

>100_bases
TGTGGTGCGCCGACGCGAACTATGGTGGACGACATCCTGATCCAGAAGACGCCACACTTGGTCCATGCGCCTCTTCTGAG
ATTAAACCCGGTGACTAGAC

Downstream 100 bases:

>100_bases
TGCGCCCATCGGAACCGAGGTCAGCACTCCATGCGTAAAAAAACCGTCCGCAGCGGGATCAGGGCCATCTGCGCCAGCAT
CATCTCCCTCATGGTCGCCA

Product: tRNA (N6-threonylcarbamoyl-A37) modification ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MLLEINPDNPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRYARVS
NYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRMPDNNICLAIVKELGHPIVTTSANLSGEDPIGNPWQVEHEL
GKLLDLVVDGGDLSADVSSVVSLIGDSPELLRKGVGDVSWCE

Sequences:

>Translated_202_residues
MLLEINPDNPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRYARVS
NYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRMPDNNICLAIVKELGHPIVTTSANLSGEDPIGNPWQVEHEL
GKLLDLVVDGGDLSADVSSVVSLIGDSPELLRKGVGDVSWCE
>Mature_202_residues
MLLEINPDNPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRKKPFSFICSDISEISRYARVS
NYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRMPDNNICLAIVKELGHPIVTTSANLSGEDPIGNPWQVEHEL
GKLLDLVVDGGDLSADVSSVVSLIGDSPELLRKGVGDVSWCE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Homo sapiens, GI58761510, Length=160, Percent_Identity=34.375, Blast_Score=78, Evalue=4e-15,
Organism=Escherichia coli, GI87081864, Length=196, Percent_Identity=41.3265306122449, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI2367210, Length=163, Percent_Identity=28.2208588957055, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17537239, Length=201, Percent_Identity=31.8407960199005, Blast_Score=83, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6321269, Length=186, Percent_Identity=28.494623655914, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI78707274, Length=131, Percent_Identity=35.1145038167939, Blast_Score=83, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22212; Mature: 22212

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLEINPDNPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRK
CEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
KPFSFICSDISEISRYARVSNYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCHHEEEEEC
PDNNICLAIVKELGHPIVTTSANLSGEDPIGNPWQVEHELGKLLDLVVDGGDLSADVSSV
CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHH
VSLIGDSPELLRKGVGDVSWCE
HHHHCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLLEINPDNPQPRLVAKVVEILKNGGVVAYPTDTTYGIGCSIFSKKGIERIYQVKQRDRK
CEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
KPFSFICSDISEISRYARVSNYAFKQLRRLLPGPYTFVLEANSVVPDLVTTKQRTVGIRM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCHHEEEEEC
PDNNICLAIVKELGHPIVTTSANLSGEDPIGNPWQVEHELGKLLDLVVDGGDLSADVSSV
CCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHH
VSLIGDSPELLRKGVGDVSWCE
HHHHCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]