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The map label for this gene is rbfA

Identifier: 197117692

GI number: 197117692

Start: 1508159

End: 1508518

Strand: Direct

Name: rbfA

Synonym: Gbem_1304

Alternate gene names: 197117692

Gene position: 1508159-1508518 (Clockwise)

Preceding gene: 197117691

Following gene: 197117693

Centisome position: 32.68

GC content: 56.67

Gene sequence:

>360_bases
ATGGTAAAGCGTTCAGACAAGGTCGGAGAGCAGATCCACAAGATTATCTCCGAACTCCTCATCAAGGGGCTCAAGGACCC
GCGCATCGGGTTTCTCACCATCACCGGCGTCAAGATGACCCCGGACCTCAGGCAGGCGACGGTGTACTTCACCGTGCATG
GCAGCGACGAGGACAAAAAGAACAGCGAGGCAGGGCTCAACTCCGCCAAGGGTTACATCCGCAAGGAGATCGGGCAGGCG
CTCAAGATGCGCTTTGTCCCCGAGGTCCTGTTCAAGTACGACACATCCCTGGATTACGGCCAGCATATCGAATCGATTCT
GAAGGAGATAGGGGCAACGGATGACGGCGAGCAAAGCTGA

Upstream 100 bases:

>100_bases
AAACCTTGACCCCGGTCCATACACCCTCTGGGGGCGGGGATGTGACTGCTTAACCCTGCGGCTCGTCTGAGCCACGGGAA
ACCTACAAGAGAGAAAGAAA

Downstream 100 bases:

>100_bases
GATAACCCGGATACTGGCGGAGATCGACAACGGCTCCAGCTTCCTGATCACCAGCCACGAGAGCCCCGACCCGGACGCGG
TCGGCTCGTCGCTTGCCCTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MVKRSDKVGEQIHKIISELLIKGLKDPRIGFLTITGVKMTPDLRQATVYFTVHGSDEDKKNSEAGLNSAKGYIRKEIGQA
LKMRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQS

Sequences:

>Translated_119_residues
MVKRSDKVGEQIHKIISELLIKGLKDPRIGFLTITGVKMTPDLRQATVYFTVHGSDEDKKNSEAGLNSAKGYIRKEIGQA
LKMRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQS
>Mature_119_residues
MVKRSDKVGEQIHKIISELLIKGLKDPRIGFLTITGVKMTPDLRQATVYFTVHGSDEDKKNSEAGLNSAKGYIRKEIGQA
LKMRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=36.2068965517241, Blast_Score=77, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_GEOBB (B5EI59)

Other databases:

- EMBL:   CP001124
- RefSeq:   YP_002138119.1
- ProteinModelPortal:   B5EI59
- SMR:   B5EI59
- GeneID:   6781291
- GenomeReviews:   CP001124_GR
- KEGG:   gbm:Gbem_1304
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   CLSK2544635
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13327; Mature: 13327

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKRSDKVGEQIHKIISELLIKGLKDPRIGFLTITGVKMTPDLRQATVYFTVHGSDEDKK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCCEEEEEEEEECCCCCCC
NSEAGLNSAKGYIRKEIGQALKMRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVKRSDKVGEQIHKIISELLIKGLKDPRIGFLTITGVKMTPDLRQATVYFTVHGSDEDKK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEECCCCCEEEEEEEEECCCCCCC
NSEAGLNSAKGYIRKEIGQALKMRFVPEVLFKYDTSLDYGQHIESILKEIGATDDGEQS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA