| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is acnB [H]
Identifier: 197117682
GI number: 197117682
Start: 1493335
End: 1495854
Strand: Direct
Name: acnB [H]
Synonym: Gbem_1294
Alternate gene names: 197117682
Gene position: 1493335-1495854 (Clockwise)
Preceding gene: 197117681
Following gene: 197117684
Centisome position: 32.36
GC content: 64.01
Gene sequence:
>2520_bases ATGATTGAAGCGTATCTGAAGCAAGAGGCAGAAAGAAAAGCACTCGGTATCCCCGCCAAGCCGCTCGACCCGGAGCAGAC CGCGGAACTTTGCAAACTGCTGGAGGCGCCGCCGGCCGGCAAAGAGGCGTTCCTGCTCGAGCTCCTCAAGGAGAGGGTTT CCCCGGGCGTCGACCCCGCAGCCGAAGTGAAGGCCGGTTTCCTCGCCGGTATCGTTTCCGGCGCGAAGAAATCCCCGCTC ATCTCCAAGAAAGAGGCAGTCCAGATCCTCGGGACCATGCTGGGCGGCTACAACGTAGCCCCGCTGGTCGCAGCGCTCAA GGACGCCGAGCTTGCCGATGAGGCCGTCAAGGCTCTCTGCGGCACCACCCTGGTATACGACGCGTTCGACGAGGTGCTGG CGCTTTCCAAATCCAACGCCTCCGCAAAAAAAGTCATCGAGTCCTGGGCCAACGCCGAGTGGTTCACCTCCAAGAAGGGC CTCCCGGAGACCGTGAAGGTGAAGGTCTACAAGGTCGACGGCGAGATCAACACCGACGACTTCTCCCCGGCAGGCGACGC CTGGAGCCGCCCGGACATCCCGCTGCACGCGCTCGCCATGGGCAAGACCCGCTTCCCGGACGGCAACGCCACCATCGCCA AGTTCAGGGCTGATGGGTTCCAGGTTGCTTTCGTGGGCGACGTCGTGGGTACCGGTTCTTCCCGCAAATCCGCCTGCAAC AGCGTCTTGTGGCACATCGGCCAGGATATCCCCTGCGTCCCGAACAAGCGCCGCGACGGCATCATCATCGGCGGCGTCAT CGCGCCGATCTTCTTCAACACCGCGCAGGACTCCGGCGCGTTCCCGATCAAGACCGACGTGGCCAAGATGAAGACCGGCG ACGTCATCGTGATCGACTCCAAAAAGGGCGAGATCAGGAGCGAGGGGGGCGAAGTCCTCTCCACCTTCACCATCGCGCCG AACACCCTTTCCGACGAGTTCCGCGCCGGCGGCAGGATCCCGCTGATCATCGGCCGCGCCCTCACCGACCGCGCCCGCAA GGCTCTCGGCCTCGCGCCGACCGACGTCTTCACCCTCCCGGTTAACCCGGTGCCGAAGGCAGGCCAGGGTTACTCGCTGG CGCAGAAGATGGTAGGAAAGGCCTGCGGCGTCACCGGCATCCTCCCGGGCACCGCTTGTGAGCCGAAGATGACCACCGTC GGTTCCCAGGACACCACCGGTCCCATGACCGCCGACGAGCTGAAAGAACTCGCTTGCCTCAAGTTCCTGGCGCCGATGTT CATGCAGTCCTTCTGCCACACCGCCGCCTACCCGAAACCGGCCGACGTCAAGATGCACAAGACCCTGCCGCAGTTCATCA TCGAGCGCGGCGGCGTACCCCTGAAGCCGGGCGACGGCGTCATCCACTCCTGGCTCAACCGTCTCCTCGTGCCGGACACC GTCGGTACCGGCGGCGACTCCCACACCCGTTTCCCGATCGGGATCTCCTTCCCGGCAGGTTCCGGCCTGGTCGCCTTCGC GGGCGCCCTGGGCTTCATGCCGCTCGACATGCCCGAGTCGGTACTGGTTCGCTTCAAAGGCAAGTTCAACCCCGGCATCA CCCTGCGCGACGCGGTCAACGCCATCCCGCTTTGGGCCATCAAGCAGGGGCTCCTCACCGTGCCCAAGAAGAACAAGGTC AACATCTTCAACGGCCGCATCCTGGAGATGGAAGGGCTTCCCGAGCTTTCCGTCGAGCAGGCATTCGAGCTGACCGACGC CGCCGCCGAGCGTAGCGCCGCAGCCGGCTGCATCAAACTCTCCGAGAAATCCGTTGCCACTTACCTCCGTTCCAACGTGG CGCTGATGAAGCAGATGATCGCCGACGGCTACCAGGACGCGCAGACCCTGCAAAACCGCATCGACGCAGCCAACGAGTGG CTGAAGGCGCCGAAGCTTCTCGAAGCCGACGCCAACGCGGAATACGCCGCGGTGATCGAGATCGACCTGGCCCAGATCAC CGAGCCGATCCTTGCCTGCCCGAACGACCCGGACGACGTCAAGATCCTCTCCGAGGTTGCCGGCACCCCGATCCAGGACG TGTTCCTCGGTTCCTGCATGACCAACATCGGCCACTTCCGCGCCGCCGGCGAGATCTGGAGGGGGACCAAGTTCAACCCC AACGTCCGTACCTGGATCTGCCCGCCGACCCGCATGGATCAGGCGAAGCTTAAGGACGAGGCTTACTTCTCCGTCTACAG TGCCATGGGCGCACGCGTAGAAATCGCCGGCTGCTCGCTCTGCATGGGGAACCAGGCACGCGTGCCCGACGGGGTGAACA TGTTCTCCACCTCGACCCGTAACTTCGACGACAGGATCGGCAACGGCGCCAAGGTGTTCCTCGGCTCCGCGGAACTGGGG GCCGTCACCGTCAACCTCGGCAAGCTCCCGACCCCGGCCGAGTACCTGGCGGCGTACCAGGAGAAGGTCGAGCCGAATAA GGCGAACGTCTACAAATACCTCCAGTTCGACGAGATGTAA
Upstream 100 bases:
>100_bases GGTAAAAACTGTATACAGTATCCACTCAAATGAAGCTCGTCTGTCAAGACTATGTCTCCATAACTGCCGTAAATAGCTGC ACAAAATCTGAGGAGGGACC
Downstream 100 bases:
>100_bases TAAGGAAGCATAAAGCAGCAATGAAAAAGGCCCGCCGGGATAACCGGCGGGCCTTTTTAGTTTTTGTCTGACCAGTCTGA CCAGTCTGACCAGTCGGACC
Product: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
Products: NA
Alternate protein names: Aconitase 2; 2-methylisocitrate dehydratase; Citrate hydro-lyase 2 [H]
Number of amino acids: Translated: 839; Mature: 839
Protein sequence:
>839_residues MIEAYLKQEAERKALGIPAKPLDPEQTAELCKLLEAPPAGKEAFLLELLKERVSPGVDPAAEVKAGFLAGIVSGAKKSPL ISKKEAVQILGTMLGGYNVAPLVAALKDAELADEAVKALCGTTLVYDAFDEVLALSKSNASAKKVIESWANAEWFTSKKG LPETVKVKVYKVDGEINTDDFSPAGDAWSRPDIPLHALAMGKTRFPDGNATIAKFRADGFQVAFVGDVVGTGSSRKSACN SVLWHIGQDIPCVPNKRRDGIIIGGVIAPIFFNTAQDSGAFPIKTDVAKMKTGDVIVIDSKKGEIRSEGGEVLSTFTIAP NTLSDEFRAGGRIPLIIGRALTDRARKALGLAPTDVFTLPVNPVPKAGQGYSLAQKMVGKACGVTGILPGTACEPKMTTV GSQDTTGPMTADELKELACLKFLAPMFMQSFCHTAAYPKPADVKMHKTLPQFIIERGGVPLKPGDGVIHSWLNRLLVPDT VGTGGDSHTRFPIGISFPAGSGLVAFAGALGFMPLDMPESVLVRFKGKFNPGITLRDAVNAIPLWAIKQGLLTVPKKNKV NIFNGRILEMEGLPELSVEQAFELTDAAAERSAAAGCIKLSEKSVATYLRSNVALMKQMIADGYQDAQTLQNRIDAANEW LKAPKLLEADANAEYAAVIEIDLAQITEPILACPNDPDDVKILSEVAGTPIQDVFLGSCMTNIGHFRAAGEIWRGTKFNP NVRTWICPPTRMDQAKLKDEAYFSVYSAMGARVEIAGCSLCMGNQARVPDGVNMFSTSTRNFDDRIGNGAKVFLGSAELG AVTVNLGKLPTPAEYLAAYQEKVEPNKANVYKYLQFDEM
Sequences:
>Translated_839_residues MIEAYLKQEAERKALGIPAKPLDPEQTAELCKLLEAPPAGKEAFLLELLKERVSPGVDPAAEVKAGFLAGIVSGAKKSPL ISKKEAVQILGTMLGGYNVAPLVAALKDAELADEAVKALCGTTLVYDAFDEVLALSKSNASAKKVIESWANAEWFTSKKG LPETVKVKVYKVDGEINTDDFSPAGDAWSRPDIPLHALAMGKTRFPDGNATIAKFRADGFQVAFVGDVVGTGSSRKSACN SVLWHIGQDIPCVPNKRRDGIIIGGVIAPIFFNTAQDSGAFPIKTDVAKMKTGDVIVIDSKKGEIRSEGGEVLSTFTIAP NTLSDEFRAGGRIPLIIGRALTDRARKALGLAPTDVFTLPVNPVPKAGQGYSLAQKMVGKACGVTGILPGTACEPKMTTV GSQDTTGPMTADELKELACLKFLAPMFMQSFCHTAAYPKPADVKMHKTLPQFIIERGGVPLKPGDGVIHSWLNRLLVPDT VGTGGDSHTRFPIGISFPAGSGLVAFAGALGFMPLDMPESVLVRFKGKFNPGITLRDAVNAIPLWAIKQGLLTVPKKNKV NIFNGRILEMEGLPELSVEQAFELTDAAAERSAAAGCIKLSEKSVATYLRSNVALMKQMIADGYQDAQTLQNRIDAANEW LKAPKLLEADANAEYAAVIEIDLAQITEPILACPNDPDDVKILSEVAGTPIQDVFLGSCMTNIGHFRAAGEIWRGTKFNP NVRTWICPPTRMDQAKLKDEAYFSVYSAMGARVEIAGCSLCMGNQARVPDGVNMFSTSTRNFDDRIGNGAKVFLGSAELG AVTVNLGKLPTPAEYLAAYQEKVEPNKANVYKYLQFDEM >Mature_839_residues MIEAYLKQEAERKALGIPAKPLDPEQTAELCKLLEAPPAGKEAFLLELLKERVSPGVDPAAEVKAGFLAGIVSGAKKSPL ISKKEAVQILGTMLGGYNVAPLVAALKDAELADEAVKALCGTTLVYDAFDEVLALSKSNASAKKVIESWANAEWFTSKKG LPETVKVKVYKVDGEINTDDFSPAGDAWSRPDIPLHALAMGKTRFPDGNATIAKFRADGFQVAFVGDVVGTGSSRKSACN SVLWHIGQDIPCVPNKRRDGIIIGGVIAPIFFNTAQDSGAFPIKTDVAKMKTGDVIVIDSKKGEIRSEGGEVLSTFTIAP NTLSDEFRAGGRIPLIIGRALTDRARKALGLAPTDVFTLPVNPVPKAGQGYSLAQKMVGKACGVTGILPGTACEPKMTTV GSQDTTGPMTADELKELACLKFLAPMFMQSFCHTAAYPKPADVKMHKTLPQFIIERGGVPLKPGDGVIHSWLNRLLVPDT VGTGGDSHTRFPIGISFPAGSGLVAFAGALGFMPLDMPESVLVRFKGKFNPGITLRDAVNAIPLWAIKQGLLTVPKKNKV NIFNGRILEMEGLPELSVEQAFELTDAAAERSAAAGCIKLSEKSVATYLRSNVALMKQMIADGYQDAQTLQNRIDAANEW LKAPKLLEADANAEYAAVIEIDLAQITEPILACPNDPDDVKILSEVAGTPIQDVFLGSCMTNIGHFRAAGEIWRGTKFNP NVRTWICPPTRMDQAKLKDEAYFSVYSAMGARVEIAGCSLCMGNQARVPDGVNMFSTSTRNFDDRIGNGAKVFLGSAELG AVTVNLGKLPTPAEYLAAYQEKVEPNKANVYKYLQFDEM
Specific function: Catalyzes the isomerization of citrate to isocitrate via cis-aconitate as well as the dehydration of 2-methylisocitrate to cis-2-methylaconitate [H]
COG id: COG1049
COG function: function code C; Aconitase B
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aconitase/IPM isomerase family [H]
Homologues:
Organism=Escherichia coli, GI2367097, Length=851, Percent_Identity=62.8672150411281, Blast_Score=1021, Evalue=0.0, Organism=Escherichia coli, GI1786259, Length=377, Percent_Identity=25.1989389920424, Blast_Score=76, Evalue=9e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015931 - InterPro: IPR015937 - InterPro: IPR001030 - InterPro: IPR015928 - InterPro: IPR018136 - InterPro: IPR004406 - InterPro: IPR015930 - InterPro: IPR015933 - InterPro: IPR015929 [H]
Pfam domain/function: PF00330 Aconitase; PF06434 Aconitase_2_N; PF11791 Aconitase_B_N [H]
EC number: =4.2.1.3; =4.2.1.99 [H]
Molecular weight: Translated: 89808; Mature: 89808
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: PS00450 ACONITASE_1 ; PS01244 ACONITASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIEAYLKQEAERKALGIPAKPLDPEQTAELCKLLEAPPAGKEAFLLELLKERVSPGVDPA CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHH AEVKAGFLAGIVSGAKKSPLISKKEAVQILGTMLGGYNVAPLVAALKDAELADEAVKALC HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH GTTLVYDAFDEVLALSKSNASAKKVIESWANAEWFTSKKGLPETVKVKVYKVDGEINTDD HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEEECCCCCCCC FSPAGDAWSRPDIPLHALAMGKTRFPDGNATIAKFRADGFQVAFVGDVVGTGSSRKSACN CCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHH SVLWHIGQDIPCVPNKRRDGIIIGGVIAPIFFNTAQDSGAFPIKTDVAKMKTGDVIVIDS HHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCCCCCEECCHHHCCCCCEEEEEC KKGEIRSEGGEVLSTFTIAPNTLSDEFRAGGRIPLIIGRALTDRARKALGLAPTDVFTLP CCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCEEEEC VNPVPKAGQGYSLAQKMVGKACGVTGILPGTACEPKMTTVGSQDTTGPMTADELKELACL CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHH KFLAPMFMQSFCHTAAYPKPADVKMHKTLPQFIIERGGVPLKPGDGVIHSWLNRLLVPDT HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC VGTGGDSHTRFPIGISFPAGSGLVAFAGALGFMPLDMPESVLVRFKGKFNPGITLRDAVN CCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHEEECCCCCCCEEHHHHHC AIPLWAIKQGLLTVPKKNKVNIFNGRILEMEGLPELSVEQAFELTDAAAERSAAAGCIKL CCHHHHHHHCCEECCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEE SEKSVATYLRSNVALMKQMIADGYQDAQTLQNRIDAANEWLKAPKLLEADANAEYAAVIE CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEE IDLAQITEPILACPNDPDDVKILSEVAGTPIQDVFLGSCMTNIGHFRAAGEIWRGTKFNP EEHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NVRTWICPPTRMDQAKLKDEAYFSVYSAMGARVEIAGCSLCMGNQARVPDGVNMFSTSTR CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCHHCCCCC NFDDRIGNGAKVFLGSAELGAVTVNLGKLPTPAEYLAAYQEKVEPNKANVYKYLQFDEM CHHHHCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHCEEEEEEECCC >Mature Secondary Structure MIEAYLKQEAERKALGIPAKPLDPEQTAELCKLLEAPPAGKEAFLLELLKERVSPGVDPA CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHH AEVKAGFLAGIVSGAKKSPLISKKEAVQILGTMLGGYNVAPLVAALKDAELADEAVKALC HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH GTTLVYDAFDEVLALSKSNASAKKVIESWANAEWFTSKKGLPETVKVKVYKVDGEINTDD HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCCCCEEEEEEEEECCCCCCCC FSPAGDAWSRPDIPLHALAMGKTRFPDGNATIAKFRADGFQVAFVGDVVGTGSSRKSACN CCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHH SVLWHIGQDIPCVPNKRRDGIIIGGVIAPIFFNTAQDSGAFPIKTDVAKMKTGDVIVIDS HHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCCCCCEECCHHHCCCCCEEEEEC KKGEIRSEGGEVLSTFTIAPNTLSDEFRAGGRIPLIIGRALTDRARKALGLAPTDVFTLP CCCCCCCCCCCEEEEEEECCCCCCHHHHCCCCCEEEECHHHHHHHHHHHCCCCCCEEEEC VNPVPKAGQGYSLAQKMVGKACGVTGILPGTACEPKMTTVGSQDTTGPMTADELKELACL CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHH KFLAPMFMQSFCHTAAYPKPADVKMHKTLPQFIIERGGVPLKPGDGVIHSWLNRLLVPDT HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC VGTGGDSHTRFPIGISFPAGSGLVAFAGALGFMPLDMPESVLVRFKGKFNPGITLRDAVN CCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHEEECCCCCCCEEHHHHHC AIPLWAIKQGLLTVPKKNKVNIFNGRILEMEGLPELSVEQAFELTDAAAERSAAAGCIKL CCHHHHHHHCCEECCCCCCEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHEEE SEKSVATYLRSNVALMKQMIADGYQDAQTLQNRIDAANEWLKAPKLLEADANAEYAAVIE CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEEEEEE IDLAQITEPILACPNDPDDVKILSEVAGTPIQDVFLGSCMTNIGHFRAAGEIWRGTKFNP EEHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC NVRTWICPPTRMDQAKLKDEAYFSVYSAMGARVEIAGCSLCMGNQARVPDGVNMFSTSTR CCEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCHHCCCCC NFDDRIGNGAKVFLGSAELGAVTVNLGKLPTPAEYLAAYQEKVEPNKANVYKYLQFDEM CHHHHCCCCCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCHHCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]