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The map label for this gene is fdhD [H]

Identifier: 197117681

GI number: 197117681

Start: 1492317

End: 1493084

Strand: Direct

Name: fdhD [H]

Synonym: Gbem_1293

Alternate gene names: 197117681

Gene position: 1492317-1493084 (Clockwise)

Preceding gene: 197117680

Following gene: 197117682

Centisome position: 32.34

GC content: 65.1

Gene sequence:

>768_bases
ATGAACCAAGTTCACAGATACGCAGACGGCGAGCTTATCCCGGGGGAGGCCCCCTTGGTGCAGGAGTTCCCGCTGGTGCT
CAGGGTGAACGACCGGGAGTTGGTCACCCTGATCGCCTCGCCCCACGACCTCCGGTTCCTGGTGGCTGGATTCCTGCGGG
TCCAGGGTTTCGTTGCGGCCCCCGAAGACTTCCTGATCTTGAGCGTCTGCAACGACTACGGCATCGCCAACGTCCGGATA
CGCGGCGAAATCCCTGCCGACCTGAAGCCTGTGCTGACCTCTGGCTGCGGCACCGGCATCACCTTCAGCCTCCCGGGAGC
AGAGACCTTGGAAGACCGGTGGAGCGACTCCCCCCCGGTCTCGGCCGCGGCCGTCTTCGAGCTCATGAAGCGCCTGGCTC
TTCTTTCTGAGAAATACAGCAAGCACGGCGGAGTCCATTCCGCCGCTGTCGGAGACTGCGAGGGGAGGCTCCTCTTGCAT
GCCGAGGATATCGGCCGCCACAACACCGTCGACCGTCTGGCCGGGGAGGCGCTGTTGCGGGGGGTGCCGCTGGAGGGAAC
CCTCCTGGTGAGTTCCGGGCGAGTCTCCGCCGAGATGGCGGCGAAGGCGGCGACCCTTGGCGTGAGGCTCATCGCCTCCC
GCACTTCCCCCACCGACATGGCCGTCACCATCTGCCAAAAGGCAGGCATCGTGCTCATCGGCTATCTGAAAGTGGGGAGG
TTCACCGTGTACGCCCACCCCGAGCAACTTCTGGTCCCGCACGCCTGA

Upstream 100 bases:

>100_bases
AAGGGTGAGGTCCCAGGTGAGATGTCCAGGCAGGGGGGCCGCCTGAGGCCGGCGCCCGTAACCGCTGGGGCACCTAAACG
ATGTGGAAGAAAAGAGTCTT

Downstream 100 bases:

>100_bases
CCCTCATCCTTCGCCGCCTGTCATTTATTTTTCCAATCAACACCCCGTCGCTCTCCGCTTCAGCCAACTCCAGCTTCGAA
AAAAACGGCACCTTGCCGGA

Product: nitrate assimilation protein NarQ or formate dehydrogenase accessory protein FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MNQVHRYADGELIPGEAPLVQEFPLVLRVNDRELVTLIASPHDLRFLVAGFLRVQGFVAAPEDFLILSVCNDYGIANVRI
RGEIPADLKPVLTSGCGTGITFSLPGAETLEDRWSDSPPVSAAAVFELMKRLALLSEKYSKHGGVHSAAVGDCEGRLLLH
AEDIGRHNTVDRLAGEALLRGVPLEGTLLVSSGRVSAEMAAKAATLGVRLIASRTSPTDMAVTICQKAGIVLIGYLKVGR
FTVYAHPEQLLVPHA

Sequences:

>Translated_255_residues
MNQVHRYADGELIPGEAPLVQEFPLVLRVNDRELVTLIASPHDLRFLVAGFLRVQGFVAAPEDFLILSVCNDYGIANVRI
RGEIPADLKPVLTSGCGTGITFSLPGAETLEDRWSDSPPVSAAAVFELMKRLALLSEKYSKHGGVHSAAVGDCEGRLLLH
AEDIGRHNTVDRLAGEALLRGVPLEGTLLVSSGRVSAEMAAKAATLGVRLIASRTSPTDMAVTICQKAGIVLIGYLKVGR
FTVYAHPEQLLVPHA
>Mature_255_residues
MNQVHRYADGELIPGEAPLVQEFPLVLRVNDRELVTLIASPHDLRFLVAGFLRVQGFVAAPEDFLILSVCNDYGIANVRI
RGEIPADLKPVLTSGCGTGITFSLPGAETLEDRWSDSPPVSAAAVFELMKRLALLSEKYSKHGGVHSAAVGDCEGRLLLH
AEDIGRHNTVDRLAGEALLRGVPLEGTLLVSSGRVSAEMAAKAATLGVRLIASRTSPTDMAVTICQKAGIVLIGYLKVGR
FTVYAHPEQLLVPHA

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=246, Percent_Identity=29.6747967479675, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 27308; Mature: 27308

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQVHRYADGELIPGEAPLVQEFPLVLRVNDRELVTLIASPHDLRFLVAGFLRVQGFVAA
CCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHCCEEEC
PEDFLILSVCNDYGIANVRIRGEIPADLKPVLTSGCGTGITFSLPGAETLEDRWSDSPPV
CCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCEEEECCCCHHHHHHCCCCCCC
SAAAVFELMKRLALLSEKYSKHGGVHSAAVGDCEGRLLLHAEDIGRHNTVDRLAGEALLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEHHCCCCCHHHHHHHHHHHC
GVPLEGTLLVSSGRVSAEMAAKAATLGVRLIASRTSPTDMAVTICQKAGIVLIGYLKVGR
CCCCCCEEEEECCCCCHHHHHHHHHHEEEEEECCCCCCHHHHEEHHHCCEEEEEEEEECE
FTVYAHPEQLLVPHA
EEEEECCHHCCCCCC
>Mature Secondary Structure
MNQVHRYADGELIPGEAPLVQEFPLVLRVNDRELVTLIASPHDLRFLVAGFLRVQGFVAA
CCCCCCCCCCCCCCCCCCCHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHCCEEEC
PEDFLILSVCNDYGIANVRIRGEIPADLKPVLTSGCGTGITFSLPGAETLEDRWSDSPPV
CCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHCCCCCCEEEECCCCHHHHHHCCCCCCC
SAAAVFELMKRLALLSEKYSKHGGVHSAAVGDCEGRLLLHAEDIGRHNTVDRLAGEALLR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEHHCCCCCHHHHHHHHHHHC
GVPLEGTLLVSSGRVSAEMAAKAATLGVRLIASRTSPTDMAVTICQKAGIVLIGYLKVGR
CCCCCCEEEEECCCCCHHHHHHHHHHEEEEEECCCCCCHHHHEEHHHCCEEEEEEEEECE
FTVYAHPEQLLVPHA
EEEEECCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA