| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is loN-2 [H]
Identifier: 197117662
GI number: 197117662
Start: 1471254
End: 1473674
Strand: Direct
Name: loN-2 [H]
Synonym: Gbem_1274
Alternate gene names: 197117662
Gene position: 1471254-1473674 (Clockwise)
Preceding gene: 197117661
Following gene: 197117663
Centisome position: 31.88
GC content: 64.68
Gene sequence:
>2421_bases ATGACTGAGAAAGCCAGAACCAGAGGTAAAAGGAGGGGGAATCCGGAAAGATTCCCTCTCTTTCCATTAAGGGACATAGT TATCTTCCCGCACATGGTGATTCCCCTCTTCGTAGGGAGGGAGAAGTCGGTGCTCGCCCTAGAGGCGGCCATGGCGCAAA ACGACAAGCTGATCCTTTTGGCCACGCAGAAAAACGCCAAGACCGAGGACCCCGAGCCTGGAGACATCTACACGGTCGGG ACCCTTTGCCAGGTGATCCAGCTCCTGAAGCTCCCCGACGGGACCGTGAAGGTGCTGGTGGAAGGGAAGCGGCGCGGCTC CATCGCCTCCTTCTCCGACAACAGCGAATACTTCGAGGTCGAGGTCGAGGTGCTCGAGGAGCAAAGCGGCAACGACAGCG AGAACGAGGCGCTGAAGCGCGGGGTGCTTGCCTCCTTCGAAAGCTACGTCGAGCTGAACAGCTCGGTGCCGTCCGAGATC CTGCAGTCGGTGCAGGCGATCGCGGACCCCTCGCGCCTGGCCGATTCCATTGCCCCGCACCTGAACCTTAAGGTGGCACA GAAGCAGGAGCTTCTGGCCGCGGTGCAGCCCGCGCGCCGCATGGAGCGACTCTTGTCGCTCATGGGGGCGGAGATCGAGA TCCTGCAGATCGAGAAGAAGATCCATGCCCGGGTCAAGAAGCAGATGGAGAAGACCCAGAAGGATTACTACCTGAACGAG CAGATCAGGGCGATCCAGAAGGAGCTGGGGGGGAAAGACGAGTTCAAGCAGGAGCTGCGCGCCCTGGAGGCGAAGGCGGC CAAGCTGCCGCTGTCGCCCGAGGCCAAGCAGAAGGTGCAAAGCGAGATCAAGAAGCTTAAGTTCATGTCCCCCATGTCCG CCGAGGCCTCGGTGGTGCGCAACTACGTGGAGTGGCTCCTGGCGCTTCCCTGGGGCGCCTACGCCGAGGAAAACCGGGAG TTGAAGGTAGCCCGGGAGCGGCTGGACGCCGACCACTACGGCCTGGAGAAGGTGAAGCTCAGGATCCTCGAATTCCTGGC GGTGAGCGCGCTCGCCCCGGGGATGAAGGGCCCCATCCTCTGCCTGGTGGGCCCTCCCGGGGTCGGCAAGACCTCGCTCG CCCGCTCGGTCGCGAAGGCCACCGGCCGCGACTTCGTGAAGATCTCGCTGGGCGGGGTGCGCGACGAGGCGGAGATCAGG GGGCACCGGCGCACCTACGTCGGGGCCATGCCCGGCCGGATCATCCAGTCGCTCAAGAAGTGCGGCTCCTCGAACCCGGT CTTTCTTTTGGACGAGATCGACAAGATGAGCTCCGACTTCCGCGGCGATCCCGCCTCGGCACTTCTGGAGGTGCTCGACC CGGAGCAGAACAACTGCTTCAACGACCATTTCCTCGACCTCGACTACGACCTCTCGCAGGTGATGTTCATCACCACCGCC AACTCGAGCCACACCATACCGAGGCCGCTTCTGGACCGCATGGAGGTGGTGCGGCTGGACGGCTACACCGAGCACGAAAA GCTTGCCATCGCGCGCGAGTACCTGGTCCCCAAACAAGCGGCGGGAAACGGGCTCGCTGGGAAGGGGATCAGCTTCACCG ATGCCGCCGTCCTTGAGTTGGTCCGCCGCTACACCCGCGAGGCAGGCGTCAGGAACCTGGAGCGGGAGATCGGCGCCGTA TGCCGCAAGATCGCCTTCGCCGTCGCCGGCGGCGGAAAGCTGCGTCGCACCGTGCAGCCGCGCCAGATAGCCGGCTTCCT GGGTGCGCCGCGGTTCAAGTACGGAGAGGCGGGGCTCGAAGACGCGGTGGGGCTCGTGACCGGTCTCGCCTGGACCGAGG TCGGGGGAGAACTCCTGAACATCGAGGTGGTGTCGCTGCCGGGCAAGGGGAAGCTGACCGTGACCGGCAAGCTGGGCGAG GTGATGCAGGAATCGGCGCAGGCCGCCATGACCTACGTCCGTTCCCGCGGCGAGCTTCTGGGGTTTGCCAAGGACTTCTA CCAGCATCTGGACATCCACATCCACGTCCCGGAGGGGGCCATACCGAAGGACGGTCCCTCGGCCGGGATAGCCATGGCCT GCGCGCTCACCTCGGCGCTTACCAGGAGGCCGGTGAGACGCGATATCGCCATGACCGGCGAGGTGACCCTGCGCGGCACG GTGCTCCCCATCGGCGGCCTCAAGGAGAAACTCCTGGCGGCAGGGCGGGGGGGTATCCGCACCGTGCTGATCCCCAAGGA GAACGAGAAGGACCTGGCCGAGATCCCCAAGGAGATCCGCGCCGGCATCACGGTGCACCCGGTGGCCCACATGGACGAGG TGCTGGGGTACGCGCTCCTCGCGCCGGTGGGGCTTGCTCCGGCGGCGATCTACGGTGATGCTGCCGTCGCCGCGACCGAA AATTCGGTTGTGCCACATTAG
Upstream 100 bases:
>100_bases TGAAGGAAGTGGTCATCAACGAAGAGGTGATCTACAGCAAGGAAAAGCCGATCATCGTCTACGAGAACGTGGCGGAAAGC GCCTGAGCATACAGGAAAAC
Downstream 100 bases:
>100_bases AAAAAAAGCCGCAGAAAAAAGGTTGACAGTCGAGACGGCGCTCTGGTATAAGATGTCTTCACTTTGCGATGCAAACCGGG AGGATCAATGAATAAGGCAG
Product: ATP-dependent Lon protease
Products: NA
Alternate protein names: ATP-dependent protease La 1 [H]
Number of amino acids: Translated: 806; Mature: 805
Protein sequence:
>806_residues MTEKARTRGKRRGNPERFPLFPLRDIVIFPHMVIPLFVGREKSVLALEAAMAQNDKLILLATQKNAKTEDPEPGDIYTVG TLCQVIQLLKLPDGTVKVLVEGKRRGSIASFSDNSEYFEVEVEVLEEQSGNDSENEALKRGVLASFESYVELNSSVPSEI LQSVQAIADPSRLADSIAPHLNLKVAQKQELLAAVQPARRMERLLSLMGAEIEILQIEKKIHARVKKQMEKTQKDYYLNE QIRAIQKELGGKDEFKQELRALEAKAAKLPLSPEAKQKVQSEIKKLKFMSPMSAEASVVRNYVEWLLALPWGAYAEENRE LKVARERLDADHYGLEKVKLRILEFLAVSALAPGMKGPILCLVGPPGVGKTSLARSVAKATGRDFVKISLGGVRDEAEIR GHRRTYVGAMPGRIIQSLKKCGSSNPVFLLDEIDKMSSDFRGDPASALLEVLDPEQNNCFNDHFLDLDYDLSQVMFITTA NSSHTIPRPLLDRMEVVRLDGYTEHEKLAIAREYLVPKQAAGNGLAGKGISFTDAAVLELVRRYTREAGVRNLEREIGAV CRKIAFAVAGGGKLRRTVQPRQIAGFLGAPRFKYGEAGLEDAVGLVTGLAWTEVGGELLNIEVVSLPGKGKLTVTGKLGE VMQESAQAAMTYVRSRGELLGFAKDFYQHLDIHIHVPEGAIPKDGPSAGIAMACALTSALTRRPVRRDIAMTGEVTLRGT VLPIGGLKEKLLAAGRGGIRTVLIPKENEKDLAEIPKEIRAGITVHPVAHMDEVLGYALLAPVGLAPAAIYGDAAVAATE NSVVPH
Sequences:
>Translated_806_residues MTEKARTRGKRRGNPERFPLFPLRDIVIFPHMVIPLFVGREKSVLALEAAMAQNDKLILLATQKNAKTEDPEPGDIYTVG TLCQVIQLLKLPDGTVKVLVEGKRRGSIASFSDNSEYFEVEVEVLEEQSGNDSENEALKRGVLASFESYVELNSSVPSEI LQSVQAIADPSRLADSIAPHLNLKVAQKQELLAAVQPARRMERLLSLMGAEIEILQIEKKIHARVKKQMEKTQKDYYLNE QIRAIQKELGGKDEFKQELRALEAKAAKLPLSPEAKQKVQSEIKKLKFMSPMSAEASVVRNYVEWLLALPWGAYAEENRE LKVARERLDADHYGLEKVKLRILEFLAVSALAPGMKGPILCLVGPPGVGKTSLARSVAKATGRDFVKISLGGVRDEAEIR GHRRTYVGAMPGRIIQSLKKCGSSNPVFLLDEIDKMSSDFRGDPASALLEVLDPEQNNCFNDHFLDLDYDLSQVMFITTA NSSHTIPRPLLDRMEVVRLDGYTEHEKLAIAREYLVPKQAAGNGLAGKGISFTDAAVLELVRRYTREAGVRNLEREIGAV CRKIAFAVAGGGKLRRTVQPRQIAGFLGAPRFKYGEAGLEDAVGLVTGLAWTEVGGELLNIEVVSLPGKGKLTVTGKLGE VMQESAQAAMTYVRSRGELLGFAKDFYQHLDIHIHVPEGAIPKDGPSAGIAMACALTSALTRRPVRRDIAMTGEVTLRGT VLPIGGLKEKLLAAGRGGIRTVLIPKENEKDLAEIPKEIRAGITVHPVAHMDEVLGYALLAPVGLAPAAIYGDAAVAATE NSVVPH >Mature_805_residues TEKARTRGKRRGNPERFPLFPLRDIVIFPHMVIPLFVGREKSVLALEAAMAQNDKLILLATQKNAKTEDPEPGDIYTVGT LCQVIQLLKLPDGTVKVLVEGKRRGSIASFSDNSEYFEVEVEVLEEQSGNDSENEALKRGVLASFESYVELNSSVPSEIL QSVQAIADPSRLADSIAPHLNLKVAQKQELLAAVQPARRMERLLSLMGAEIEILQIEKKIHARVKKQMEKTQKDYYLNEQ IRAIQKELGGKDEFKQELRALEAKAAKLPLSPEAKQKVQSEIKKLKFMSPMSAEASVVRNYVEWLLALPWGAYAEENREL KVARERLDADHYGLEKVKLRILEFLAVSALAPGMKGPILCLVGPPGVGKTSLARSVAKATGRDFVKISLGGVRDEAEIRG HRRTYVGAMPGRIIQSLKKCGSSNPVFLLDEIDKMSSDFRGDPASALLEVLDPEQNNCFNDHFLDLDYDLSQVMFITTAN SSHTIPRPLLDRMEVVRLDGYTEHEKLAIAREYLVPKQAAGNGLAGKGISFTDAAVLELVRRYTREAGVRNLEREIGAVC RKIAFAVAGGGKLRRTVQPRQIAGFLGAPRFKYGEAGLEDAVGLVTGLAWTEVGGELLNIEVVSLPGKGKLTVTGKLGEV MQESAQAAMTYVRSRGELLGFAKDFYQHLDIHIHVPEGAIPKDGPSAGIAMACALTSALTRRPVRRDIAMTGEVTLRGTV LPIGGLKEKLLAAGRGGIRTVLIPKENEKDLAEIPKEIRAGITVHPVAHMDEVLGYALLAPVGLAPAAIYGDAAVAATEN SVVPH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI21396489, Length=835, Percent_Identity=38.2035928143713, Blast_Score=531, Evalue=1e-151, Organism=Homo sapiens, GI31377667, Length=836, Percent_Identity=37.5598086124402, Blast_Score=514, Evalue=1e-146, Organism=Escherichia coli, GI1786643, Length=774, Percent_Identity=59.1731266149871, Blast_Score=919, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=728, Percent_Identity=38.3241758241758, Blast_Score=493, Evalue=1e-139, Organism=Caenorhabditis elegans, GI17556486, Length=536, Percent_Identity=41.6044776119403, Blast_Score=437, Evalue=1e-123, Organism=Saccharomyces cerevisiae, GI6319449, Length=696, Percent_Identity=37.9310344827586, Blast_Score=474, Evalue=1e-134, Organism=Drosophila melanogaster, GI221513036, Length=677, Percent_Identity=42.8360413589365, Blast_Score=521, Evalue=1e-147, Organism=Drosophila melanogaster, GI24666867, Length=677, Percent_Identity=42.8360413589365, Blast_Score=520, Evalue=1e-147,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR008268 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 88100; Mature: 87969
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: PS01046 LON_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEKARTRGKRRGNPERFPLFPLRDIVIFPHMVIPLFVGREKSVLALEAAMAQNDKLILL CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEE ATQKNAKTEDPEPGDIYTVGTLCQVIQLLKLPDGTVKVLVEGKRRGSIASFSDNSEYFEV EECCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEE EVEVLEEQSGNDSENEALKRGVLASFESYVELNSSVPSEILQSVQAIADPSRLADSIAPH EEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCC LNLKVAQKQELLAAVQPARRMERLLSLMGAEIEILQIEKKIHARVKKQMEKTQKDYYLNE CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH QIRAIQKELGGKDEFKQELRALEAKAAKLPLSPEAKQKVQSEIKKLKFMSPMSAEASVVR HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH NYVEWLLALPWGAYAEENRELKVARERLDADHYGLEKVKLRILEFLAVSALAPGMKGPIL HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE CLVGPPGVGKTSLARSVAKATGRDFVKISLGGVRDEAEIRGHRRTYVGAMPGRIIQSLKK EEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEECCCCHHHHHHHHH CGSSNPVFLLDEIDKMSSDFRGDPASALLEVLDPEQNNCFNDHFLDLDYDLSQVMFITTA CCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEC NSSHTIPRPLLDRMEVVRLDGYTEHEKLAIAREYLVPKQAAGNGLAGKGISFTDAAVLEL CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH VRRYTREAGVRNLEREIGAVCRKIAFAVAGGGKLRRTVQPRQIAGFLGAPRFKYGEAGLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCHH DAVGLVTGLAWTEVGGELLNIEVVSLPGKGKLTVTGKLGEVMQESAQAAMTYVRSRGELL HHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH GFAKDFYQHLDIHIHVPEGAIPKDGPSAGIAMACALTSALTRRPVRRDIAMTGEVTLRGT HHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHEECCCEEEEEE VLPIGGLKEKLLAAGRGGIRTVLIPKENEKDLAEIPKEIRAGITVHPVAHMDEVLGYALL EEECCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHH APVGLAPAAIYGDAAVAATENSVVPH HHCCCCCHHHCCCCEEEECCCCCCCC >Mature Secondary Structure TEKARTRGKRRGNPERFPLFPLRDIVIFPHMVIPLFVGREKSVLALEAAMAQNDKLILL CCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEE ATQKNAKTEDPEPGDIYTVGTLCQVIQLLKLPDGTVKVLVEGKRRGSIASFSDNSEYFEV EECCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEE EVEVLEEQSGNDSENEALKRGVLASFESYVELNSSVPSEILQSVQAIADPSRLADSIAPH EEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCC LNLKVAQKQELLAAVQPARRMERLLSLMGAEIEILQIEKKIHARVKKQMEKTQKDYYLNE CCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH QIRAIQKELGGKDEFKQELRALEAKAAKLPLSPEAKQKVQSEIKKLKFMSPMSAEASVVR HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH NYVEWLLALPWGAYAEENRELKVARERLDADHYGLEKVKLRILEFLAVSALAPGMKGPIL HHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE CLVGPPGVGKTSLARSVAKATGRDFVKISLGGVRDEAEIRGHRRTYVGAMPGRIIQSLKK EEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCEEECCCCHHHHHHHHH CGSSNPVFLLDEIDKMSSDFRGDPASALLEVLDPEQNNCFNDHFLDLDYDLSQVMFITTA CCCCCCEEEEECHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEC NSSHTIPRPLLDRMEVVRLDGYTEHEKLAIAREYLVPKQAAGNGLAGKGISFTDAAVLEL CCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH VRRYTREAGVRNLEREIGAVCRKIAFAVAGGGKLRRTVQPRQIAGFLGAPRFKYGEAGLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCHH DAVGLVTGLAWTEVGGELLNIEVVSLPGKGKLTVTGKLGEVMQESAQAAMTYVRSRGELL HHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH GFAKDFYQHLDIHIHVPEGAIPKDGPSAGIAMACALTSALTRRPVRRDIAMTGEVTLRGT HHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHEECCCEEEEEE VLPIGGLKEKLLAAGRGGIRTVLIPKENEKDLAEIPKEIRAGITVHPVAHMDEVLGYALL EEECCCHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHH APVGLAPAAIYGDAAVAATENSVVPH HHCCCCCHHHCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8468287 [H]