| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117614
Identifier: 197117614
GI number: 197117614
Start: 1419726
End: 1421024
Strand: Reverse
Name: 197117614
Synonym: Gbem_1226
Alternate gene names: NA
Gene position: 1421024-1419726 (Counterclockwise)
Preceding gene: 197117617
Following gene: 197117602
Centisome position: 30.79
GC content: 64.59
Gene sequence:
>1299_bases ATGGCAGAGCAAACGCAGGAGAACGGCTATCACCGGCTGATGCAGCGCGTGAACAAGTTCCCGCAGGGGGCGCCTCCCTC GGAGCTGTTGCTCAAGATCTACGCCCTTTTGTGCAGCGAGGAGGAGGCGAGGCTTTTGAGCCGGTTGCCGCTGCGCCCGT TTTCGGCGGCCAAGGCGGCGCGGGTGTGGCACATGGACAAGGAGGCGGCGCGGGGCAGATTGGAGCAGATGGCGTCGCGG TCGCTATTGCTGGACATCGAGCGGGACGGCAAGATGGTGTACGTCCTCCCTCCCCCCATGGCGGGGTTCTTCGAGTTTTC GCTGATGAGGCTGCGGCCGGACCTGGACCAGAAGCAGTTGGCCGGCCTCTTCTTCCGCTACATCAACGTGGAGGACGACT TCATCCGCGACCTTTTCGCCGGTGGGGAGACGCCGCTGGGGAGGGTGCTGGTGAACGAGGAGGCGATACCGGAGGAGAAG GTCTGCCAGGTGCTGGATTACGAGCGTGCCAGCGAGGTGATCAGGAGTGCTACCCACATAGCGGTCGGCCTTTGCTACTG CAGGCACAAGATGCTGCAGGTGGGAAAGGGGTGCCAGGCGCCCTTGGACATCTGCATGACGCTGAACCTCGCCGCCCAGT CCCTGATCAGACACGGCGCCGCCCGCAGCGTCGACGCCGTTGAAGGGCTCGACCTCCTGCAAAAGGCGCGGGACCTGAAC CTCGTGCAGTGCGCCGACAACGTGCAGCGGCAGGTCAACTTCATCTGCCACTGCTGCGGCTGCTGCTGCGAGGGTATGAT CGCCACCCGCCGCCTGGCGATTCCCAACGCCATGTACACCACAAACTTCATCCAGGCCACCGACCCCGCCCGTTGCGACG GCTGCGGCAGGTGTGTCGCCATCTGCCCGGTGGACGCCATCTCGCTTGTGCGCGAGCCGGAGGGAAGCGGCATGCCGGCA AAGGCCAGGTTGAATTCCGAACTCTGTCTTGGGTGCGGGGTCTGCGCGCGCAACTGCCACAATAAGGCGGTGCGTCTTGA GGCGAGGGAGAAGCGGATGCTGACCCCGGTCAACACCGCCCACCGGCTGGTATTGATGGCCCTGGAGCGGGGGAAGCTGC AGAACCTCATCTTCGACAACCAGGCCTACCTGAGCCACCGCGCCCTGGCCGCGATACTGGGGGCGATACTGAGGCTTCCC CCGGTGAAACGGCTCACGGCCAGCCGGCAGCTCAAGTCGCGCTACCTGGAGCGCTTGATGGCGGACGTCGAGGTCACCAG GTTTTACAGGTTCGAGTGA
Upstream 100 bases:
>100_bases CCCAGAGGGAGAGGGAGTAAAAACCGCCGGTTGTTGGCGGGTCTGCGGCTGCTACACTCTTGCATTGGCAATTTTTAATT TTTTTTACAAAGGGGACGCC
Downstream 100 bases:
>100_bases AGATGGGGACTGGCTCCGCCAGGTGCCTGTCCCCCTTTCATGTCCCCCTTCAGCCCACCCTAGATGAGCCCTAGAAGCAC CAGCCCCTCCTTGAAAAGGA
Product: iron-sulfur cluster-binding oxidoreductase
Products: NA
Alternate protein names: Ferredoxin; 4Fe-4S Ferredoxin
Number of amino acids: Translated: 432; Mature: 431
Protein sequence:
>432_residues MAEQTQENGYHRLMQRVNKFPQGAPPSELLLKIYALLCSEEEARLLSRLPLRPFSAAKAARVWHMDKEAARGRLEQMASR SLLLDIERDGKMVYVLPPPMAGFFEFSLMRLRPDLDQKQLAGLFFRYINVEDDFIRDLFAGGETPLGRVLVNEEAIPEEK VCQVLDYERASEVIRSATHIAVGLCYCRHKMLQVGKGCQAPLDICMTLNLAAQSLIRHGAARSVDAVEGLDLLQKARDLN LVQCADNVQRQVNFICHCCGCCCEGMIATRRLAIPNAMYTTNFIQATDPARCDGCGRCVAICPVDAISLVREPEGSGMPA KARLNSELCLGCGVCARNCHNKAVRLEAREKRMLTPVNTAHRLVLMALERGKLQNLIFDNQAYLSHRALAAILGAILRLP PVKRLTASRQLKSRYLERLMADVEVTRFYRFE
Sequences:
>Translated_432_residues MAEQTQENGYHRLMQRVNKFPQGAPPSELLLKIYALLCSEEEARLLSRLPLRPFSAAKAARVWHMDKEAARGRLEQMASR SLLLDIERDGKMVYVLPPPMAGFFEFSLMRLRPDLDQKQLAGLFFRYINVEDDFIRDLFAGGETPLGRVLVNEEAIPEEK VCQVLDYERASEVIRSATHIAVGLCYCRHKMLQVGKGCQAPLDICMTLNLAAQSLIRHGAARSVDAVEGLDLLQKARDLN LVQCADNVQRQVNFICHCCGCCCEGMIATRRLAIPNAMYTTNFIQATDPARCDGCGRCVAICPVDAISLVREPEGSGMPA KARLNSELCLGCGVCARNCHNKAVRLEAREKRMLTPVNTAHRLVLMALERGKLQNLIFDNQAYLSHRALAAILGAILRLP PVKRLTASRQLKSRYLERLMADVEVTRFYRFE >Mature_431_residues AEQTQENGYHRLMQRVNKFPQGAPPSELLLKIYALLCSEEEARLLSRLPLRPFSAAKAARVWHMDKEAARGRLEQMASRS LLLDIERDGKMVYVLPPPMAGFFEFSLMRLRPDLDQKQLAGLFFRYINVEDDFIRDLFAGGETPLGRVLVNEEAIPEEKV CQVLDYERASEVIRSATHIAVGLCYCRHKMLQVGKGCQAPLDICMTLNLAAQSLIRHGAARSVDAVEGLDLLQKARDLNL VQCADNVQRQVNFICHCCGCCCEGMIATRRLAIPNAMYTTNFIQATDPARCDGCGRCVAICPVDAISLVREPEGSGMPAK ARLNSELCLGCGVCARNCHNKAVRLEAREKRMLTPVNTAHRLVLMALERGKLQNLIFDNQAYLSHRALAAILGAILRLPP VKRLTASRQLKSRYLERLMADVEVTRFYRFE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48463; Mature: 48332
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 8.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEQTQENGYHRLMQRVNKFPQGAPPSELLLKIYALLCSEEEARLLSRLPLRPFSAAKAA CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH RVWHMDKEAARGRLEQMASRSLLLDIERDGKMVYVLPPPMAGFFEFSLMRLRPDLDQKQL HHHCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHH AGLFFRYINVEDDFIRDLFAGGETPLGRVLVNEEAIPEEKVCQVLDYERASEVIRSATHI HHHHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVGLCYCRHKMLQVGKGCQAPLDICMTLNLAAQSLIRHGAARSVDAVEGLDLLQKARDLN HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC LVQCADNVQRQVNFICHCCGCCCEGMIATRRLAIPNAMYTTNFIQATDPARCDGCGRCVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEECCCCCCCCCCCCEEE ICPVDAISLVREPEGSGMPAKARLNSELCLGCGVCARNCHNKAVRLEAREKRMLTPVNTA ECCHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCHHEEEEHHHHHCCCCCHHH HRLVLMALERGKLQNLIFDNQAYLSHRALAAILGAILRLPPVKRLTASRQLKSRYLERLM HHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH ADVEVTRFYRFE HHHHHHHHEECC >Mature Secondary Structure AEQTQENGYHRLMQRVNKFPQGAPPSELLLKIYALLCSEEEARLLSRLPLRPFSAAKAA CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH RVWHMDKEAARGRLEQMASRSLLLDIERDGKMVYVLPPPMAGFFEFSLMRLRPDLDQKQL HHHCCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCHHHHHHHHHHHCCCCCHHHH AGLFFRYINVEDDFIRDLFAGGETPLGRVLVNEEAIPEEKVCQVLDYERASEVIRSATHI HHHHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH AVGLCYCRHKMLQVGKGCQAPLDICMTLNLAAQSLIRHGAARSVDAVEGLDLLQKARDLN HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC LVQCADNVQRQVNFICHCCGCCCEGMIATRRLAIPNAMYTTNFIQATDPARCDGCGRCVA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCEECCCCCCCCCCCCEEE ICPVDAISLVREPEGSGMPAKARLNSELCLGCGVCARNCHNKAVRLEAREKRMLTPVNTA ECCHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCHHEEEEHHHHHCCCCCHHH HRLVLMALERGKLQNLIFDNQAYLSHRALAAILGAILRLPPVKRLTASRQLKSRYLERLM HHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH ADVEVTRFYRFE HHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA