Click here to switch to the map view.

The map label for this gene is ygeA [H]

Identifier: 197117610

GI number: 197117610

Start: 1416378

End: 1417079

Strand: Direct

Name: ygeA [H]

Synonym: Gbem_1222

Alternate gene names: 197117610

Gene position: 1416378-1417079 (Clockwise)

Preceding gene: 197117609

Following gene: 197117611

Centisome position: 30.69

GC content: 59.54

Gene sequence:

>702_bases
ATGAAAACCATTGGCATGATTGGCGGCCTGGGCCCGGAAGCTACGCTTGATTACTACAAGCGCATCATCGAAGCCTCAAG
GGGAGCCGGAACCCTCGATACCCCGGAGATCATCATCTACAGCGTAAGCCTCCAGGAGGTGCTGGACCTGGCGGCCCGGC
GCGAGTGGAGTAACCTCATCTACCTCCTGACGGCGAAGGTTAAGGCTCTGCAGAAAGCCGGGGCCGATTTCGCCTTCATC
TCCGCCAACACCCCGCACGTCGTCTTCGACGAAGTCCAGGCGAAATCCCCCATCCCGCTTATCAGCATCGTCACCGCGAC
CCTGGAAAAGGCGAAGGAGCTGGGGGTGAAGCGGGTAGGCCTCTTGGGAACGAAGTTCACCATGGAGGAGAACTTTTTCG
CGGCGCCGTTCTCGGCCGCCGGCATCTCCGTGGTGATCCCGCAGCCAGCCGACCAGCAGTACATCCAGGAGAAGCTGATG
ACCGAGATCGAACTGGGGGTCTTCAAGGACGAGACCCGAGACGGCCTCCTGGCGGTGATCGGGCGCATGAAGGAGCAGGA
GCATATAGATGCCGTCATCCTCGGCTGCACGGAGTTGCCGCTGATACTGCTGAAGGACGAATTCGGGATACCTTTTTTGA
ACACGACGGCGATTCACGTGGAAAGCGTGGTGGAGTACGCGAGGAAGGAGCAGAGATGGTAG

Upstream 100 bases:

>100_bases
GCGAGCAGAAGGCGCTCGCCATGGCGGTGCAAAACCAGAAGTCCCACCGCCGCCTGACCAAGCTGGCGGGGAGGATCGGA
CAGAAAGGAGACGGGATAAC

Downstream 100 bases:

>100_bases
TAGCAGGTAATTTCAGGAAGGGAATCGTGGTTATCTTGACGATGCTGCTTCCCTCTGGGGCCGCCGCGCTGGAGCGGATT
GCCCCGGCAGGTAGCGGCAA

Product: aspartate/glutamate racemase superfamily protein

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKTIGMIGGLGPEATLDYYKRIIEASRGAGTLDTPEIIIYSVSLQEVLDLAARREWSNLIYLLTAKVKALQKAGADFAFI
SANTPHVVFDEVQAKSPIPLISIVTATLEKAKELGVKRVGLLGTKFTMEENFFAAPFSAAGISVVIPQPADQQYIQEKLM
TEIELGVFKDETRDGLLAVIGRMKEQEHIDAVILGCTELPLILLKDEFGIPFLNTTAIHVESVVEYARKEQRW

Sequences:

>Translated_233_residues
MKTIGMIGGLGPEATLDYYKRIIEASRGAGTLDTPEIIIYSVSLQEVLDLAARREWSNLIYLLTAKVKALQKAGADFAFI
SANTPHVVFDEVQAKSPIPLISIVTATLEKAKELGVKRVGLLGTKFTMEENFFAAPFSAAGISVVIPQPADQQYIQEKLM
TEIELGVFKDETRDGLLAVIGRMKEQEHIDAVILGCTELPLILLKDEFGIPFLNTTAIHVESVVEYARKEQRW
>Mature_233_residues
MKTIGMIGGLGPEATLDYYKRIIEASRGAGTLDTPEIIIYSVSLQEVLDLAARREWSNLIYLLTAKVKALQKAGADFAFI
SANTPHVVFDEVQAKSPIPLISIVTATLEKAKELGVKRVGLLGTKFTMEENFFAAPFSAAGISVVIPQPADQQYIQEKLM
TEIELGVFKDETRDGLLAVIGRMKEQEHIDAVILGCTELPLILLKDEFGIPFLNTTAIHVESVVEYARKEQRW

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=228, Percent_Identity=32.8947368421053, Blast_Score=137, Evalue=8e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 25722; Mature: 25722

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIGMIGGLGPEATLDYYKRIIEASRGAGTLDTPEIIIYSVSLQEVLDLAARREWSNLI
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHEE
YLLTAKVKALQKAGADFAFISANTPHVVFDEVQAKSPIPLISIVTATLEKAKELGVKRVG
HHHHHHHHHHHHCCCCEEEEECCCCEEEEECHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
LLGTKFTMEENFFAAPFSAAGISVVIPQPADQQYIQEKLMTEIELGVFKDETRDGLLAVI
HCCCEEEECCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GRMKEQEHIDAVILGCTELPLILLKDEFGIPFLNTTAIHVESVVEYARKEQRW
HHHHHHHHHCEEEECCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTIGMIGGLGPEATLDYYKRIIEASRGAGTLDTPEIIIYSVSLQEVLDLAARREWSNLI
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHEE
YLLTAKVKALQKAGADFAFISANTPHVVFDEVQAKSPIPLISIVTATLEKAKELGVKRVG
HHHHHHHHHHHHCCCCEEEEECCCCEEEEECHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
LLGTKFTMEENFFAAPFSAAGISVVIPQPADQQYIQEKLMTEIELGVFKDETRDGLLAVI
HCCCEEEECCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
GRMKEQEHIDAVILGCTELPLILLKDEFGIPFLNTTAIHVESVVEYARKEQRW
HHHHHHHHHCEEEECCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]