Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197117597

Identifier: 197117597

GI number: 197117597

Start: 1402597

End: 1403805

Strand: Reverse

Name: 197117597

Synonym: Gbem_1209

Alternate gene names: NA

Gene position: 1403805-1402597 (Counterclockwise)

Preceding gene: 197117602

Following gene: 197117596

Centisome position: 30.42

GC content: 59.97

Gene sequence:

>1209_bases
GTGAGCTTTAATCCTTTCAAGGAACGCGGCATCGCCGCAGACAAGCAGCTGAGGAACTGGCAGGAGCTGAACGTCAAGCC
CTACGACAAGAACGAGGTGCATCCCTACACCAAGGCCCGCATTATCCTCATGAACGGCGTGGAGGTCGAGGGGGCCATCT
TCTCGCACCAGTTCGCCCGCAACTGCAACGCCCCGGAACTAAAGAAGCAGTTAGCCCTCACCCGCAGGGTCGAACAGCAG
CAGCAAAAAACCATCAACTGGCTTTCCCCGGGAGACGAGTCGCCGCTTGAAACCACCATCGGCTATGAGCAGGTGGCGGT
CGATCTTACCGCCTTTCTCGCCGCAAACGTCCCCGATCAGTACGTGAAGCAGGTCTTCGATTTCGGGCTTCTGGAGGACT
TCGACCACCTGTACCGCTATGCCAACCTCCTGGAGATGACGCAGGGGGTGAAAGCGGAGAAGCTGGTCGGGAAGCTGACC
GAGATCACACCGGGGCGCCCCACCGTCAAGGAGCACCGCCACCCCTTCGACGACGTCAGGAAGCCGATGAACCGGATGGC
CGCCGACCCGCTCACCAAGCTCTACACTCTCACCCTTTTGGCCGGCGAGCAGCAGACCATGAACTTTTACATGAACATCG
GCAACACGCTGCAGGACCAGGTCGGGCGGGGGTTATACCAGGAGATCGCCATGATCGAGGAGCAGCACGTCACCCAGTAC
GAGTCGCTGCTCGACCCGCAGACCCCGTGGATCGAGAACGCGCTCCTGCACGAGTACAACGAGTGCTGGCTCTACTGGTC
CTTTCTGCAGGAAGAAACCGACCGCCACGTGAAACCGATCTGGGAACTGCACCTGGGCATGGAGCTCACTCACCTCCAGA
ACCTGGGCAAGATCGCCGGCAAGATGGGGGTAAACTTAGATCAGGTGCTGCCGCAGACCTTCCCCGCGCCGTTGCAGTTC
AAGTCCCAGGTGAACTACGTCAGGGAGATCCTGGCCACCCAGATCGACTACAACGCTTTCGAAACCGAGATCGGCCCGCC
GGACCAACTCCCGGAAAACCGGCGCTACGTCGAGTGCCAGGACCTGCTCAACGTAAAGGGTGCCCCGAGCGAAGAGGTGA
TCAAGATGAACCAGCGCAAGAATGGGCAGGATTACCGCCTGGAGCTGGCGGGGCAGCACCCCGTCAAGGAGCTGCGTCAG
AAGAAATAG

Upstream 100 bases:

>100_bases
AGTATAAAAAGGGGAACCTGTCCTGTCAAGCGAATCGATACGTTTGACGGCCCTAGCCCTCTTTGTATAATTGGCAAATT
CTAACCAAAGGAGGTTCAAC

Downstream 100 bases:

>100_bases
CGGATACCGCCCCTACCCTACCCTTTCGGAACGCATGAGCTACTCCCGTCGATAGGAAGCTCCCGCCGGGTGTGCATCGA
AGAAGAAATCCGACCGCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MSFNPFKERGIAADKQLRNWQELNVKPYDKNEVHPYTKARIILMNGVEVEGAIFSHQFARNCNAPELKKQLALTRRVEQQ
QQKTINWLSPGDESPLETTIGYEQVAVDLTAFLAANVPDQYVKQVFDFGLLEDFDHLYRYANLLEMTQGVKAEKLVGKLT
EITPGRPTVKEHRHPFDDVRKPMNRMAADPLTKLYTLTLLAGEQQTMNFYMNIGNTLQDQVGRGLYQEIAMIEEQHVTQY
ESLLDPQTPWIENALLHEYNECWLYWSFLQEETDRHVKPIWELHLGMELTHLQNLGKIAGKMGVNLDQVLPQTFPAPLQF
KSQVNYVREILATQIDYNAFETEIGPPDQLPENRRYVECQDLLNVKGAPSEEVIKMNQRKNGQDYRLELAGQHPVKELRQ
KK

Sequences:

>Translated_402_residues
MSFNPFKERGIAADKQLRNWQELNVKPYDKNEVHPYTKARIILMNGVEVEGAIFSHQFARNCNAPELKKQLALTRRVEQQ
QQKTINWLSPGDESPLETTIGYEQVAVDLTAFLAANVPDQYVKQVFDFGLLEDFDHLYRYANLLEMTQGVKAEKLVGKLT
EITPGRPTVKEHRHPFDDVRKPMNRMAADPLTKLYTLTLLAGEQQTMNFYMNIGNTLQDQVGRGLYQEIAMIEEQHVTQY
ESLLDPQTPWIENALLHEYNECWLYWSFLQEETDRHVKPIWELHLGMELTHLQNLGKIAGKMGVNLDQVLPQTFPAPLQF
KSQVNYVREILATQIDYNAFETEIGPPDQLPENRRYVECQDLLNVKGAPSEEVIKMNQRKNGQDYRLELAGQHPVKELRQ
KK
>Mature_401_residues
SFNPFKERGIAADKQLRNWQELNVKPYDKNEVHPYTKARIILMNGVEVEGAIFSHQFARNCNAPELKKQLALTRRVEQQQ
QKTINWLSPGDESPLETTIGYEQVAVDLTAFLAANVPDQYVKQVFDFGLLEDFDHLYRYANLLEMTQGVKAEKLVGKLTE
ITPGRPTVKEHRHPFDDVRKPMNRMAADPLTKLYTLTLLAGEQQTMNFYMNIGNTLQDQVGRGLYQEIAMIEEQHVTQYE
SLLDPQTPWIENALLHEYNECWLYWSFLQEETDRHVKPIWELHLGMELTHLQNLGKIAGKMGVNLDQVLPQTFPAPLQFK
SQVNYVREILATQIDYNAFETEIGPPDQLPENRRYVECQDLLNVKGAPSEEVIKMNQRKNGQDYRLELAGQHPVKELRQK
K

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46595; Mature: 46463

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFNPFKERGIAADKQLRNWQELNVKPYDKNEVHPYTKARIILMNGVEVEGAIFSHQFAR
CCCCCHHHHCCCHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEEEECCEECHHHHHHHHHH
NCNAPELKKQLALTRRVEQQQQKTINWLSPGDESPLETTIGYEQVAVDLTAFLAANVPDQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCHH
YVKQVFDFGLLEDFDHLYRYANLLEMTQGVKAEKLVGKLTEITPGRPTVKEHRHPFDDVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
KPMNRMAADPLTKLYTLTLLAGEQQTMNFYMNIGNTLQDQVGRGLYQEIAMIEEQHVTQY
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ESLLDPQTPWIENALLHEYNECWLYWSFLQEETDRHVKPIWELHLGMELTHLQNLGKIAG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KMGVNLDQVLPQTFPAPLQFKSQVNYVREILATQIDYNAFETEIGPPDQLPENRRYVECQ
HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEEHH
DLLNVKGAPSEEVIKMNQRKNGQDYRLELAGQHPVKELRQKK
HHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCC
>Mature Secondary Structure 
SFNPFKERGIAADKQLRNWQELNVKPYDKNEVHPYTKARIILMNGVEVEGAIFSHQFAR
CCCCHHHHCCCHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEEEECCEECHHHHHHHHHH
NCNAPELKKQLALTRRVEQQQQKTINWLSPGDESPLETTIGYEQVAVDLTAFLAANVPDQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCHH
YVKQVFDFGLLEDFDHLYRYANLLEMTQGVKAEKLVGKLTEITPGRPTVKEHRHPFDDVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
KPMNRMAADPLTKLYTLTLLAGEQQTMNFYMNIGNTLQDQVGRGLYQEIAMIEEQHVTQY
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ESLLDPQTPWIENALLHEYNECWLYWSFLQEETDRHVKPIWELHLGMELTHLQNLGKIAG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KMGVNLDQVLPQTFPAPLQFKSQVNYVREILATQIDYNAFETEIGPPDQLPENRRYVECQ
HHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCEEEHH
DLLNVKGAPSEEVIKMNQRKNGQDYRLELAGQHPVKELRQKK
HHHCCCCCCHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA