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The map label for this gene is arnC [H]

Identifier: 197117499

GI number: 197117499

Start: 1282305

End: 1282988

Strand: Reverse

Name: arnC [H]

Synonym: Gbem_1110

Alternate gene names: 197117499

Gene position: 1282988-1282305 (Counterclockwise)

Preceding gene: 197117519

Following gene: 197117495

Centisome position: 27.8

GC content: 54.39

Gene sequence:

>684_bases
ATGAAACTGTCGGTCGTCATTCCGATTTACAACGAAAAGGAAACCATCAGAGCCATTCATGCCGCCGTACAGGCTGTGCC
TATAGACAAGGAGATCATCCTTGTAGACGACTATTCAACCGACGGCACCCGCGAAATCCTGAACGAACTCGCCAGCCCCT
CCACCCGGGTGCTGCTGCACGAGCGGAATATGGGGAAGGGAGCGGCGCTCAGGACCGGATTCGGGAATGTGCTCGGAGAC
ATCGTGATAATCCAGGATGCGGACCTGGAATACGACCCCCAGGAATACGCCAAGCTGACACGGCCGATACTGGAGGGGAA
AGCCGACGTCGTGTACGGTTCCAGGTTCGTCACTGGCGAGTACCGCAGAGTCCTGTTCTTCTGGCACATGCTGGGCAACA
AGTTCCTCACCCTTCTCTCCAACATGATGACCAATATGAACCTCACCGACATGGAAACCTGCTACAAGGTGTTCCGGCGA
GAGGTCTTGGAAAACATCACTATCGAGGAAAATCGTTTCGGCTTTGAGCCGGAAATCACCGCGAAGATCGCCAAGATGAA
CGTGCGCATCTACGAAGTCGGCATCTCCTACTCCGGCAGAACCTACAAGGAAGGGAAGAAAATCGGTTGGAAGGACGGGG
TTGCCGCTCTCAAATGCATCCTGAAGTACAACCTGCTGCGCTAA

Upstream 100 bases:

>100_bases
CAGTATGATGCATCCCGCGCCGGCCGCGCCACCTATTAGACACTTCCAAACCCGCATCCACGAGGCGCAACCGGACATAA
ACCAGCAAGGAGCCTTTCGC

Downstream 100 bases:

>100_bases
CGGCTCGCGTTAGCCTGCTCCGACCGCTGCGCCATTCCCGAAAAAGCAGCGCGAACATAGCCGCCCAAGCCGCAAAAAAA
AGAGCGCTCCCCCCAACCTC

Product: family glycosyltransferase

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MKLSVVIPIYNEKETIRAIHAAVQAVPIDKEIILVDDYSTDGTREILNELASPSTRVLLHERNMGKGAALRTGFGNVLGD
IVIIQDADLEYDPQEYAKLTRPILEGKADVVYGSRFVTGEYRRVLFFWHMLGNKFLTLLSNMMTNMNLTDMETCYKVFRR
EVLENITIEENRFGFEPEITAKIAKMNVRIYEVGISYSGRTYKEGKKIGWKDGVAALKCILKYNLLR

Sequences:

>Translated_227_residues
MKLSVVIPIYNEKETIRAIHAAVQAVPIDKEIILVDDYSTDGTREILNELASPSTRVLLHERNMGKGAALRTGFGNVLGD
IVIIQDADLEYDPQEYAKLTRPILEGKADVVYGSRFVTGEYRRVLFFWHMLGNKFLTLLSNMMTNMNLTDMETCYKVFRR
EVLENITIEENRFGFEPEITAKIAKMNVRIYEVGISYSGRTYKEGKKIGWKDGVAALKCILKYNLLR
>Mature_227_residues
MKLSVVIPIYNEKETIRAIHAAVQAVPIDKEIILVDDYSTDGTREILNELASPSTRVLLHERNMGKGAALRTGFGNVLGD
IVIIQDADLEYDPQEYAKLTRPILEGKADVVYGSRFVTGEYRRVLFFWHMLGNKFLTLLSNMMTNMNLTDMETCYKVFRR
EVLENITIEENRFGFEPEITAKIAKMNVRIYEVGISYSGRTYKEGKKIGWKDGVAALKCILKYNLLR

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Homo sapiens, GI4503363, Length=235, Percent_Identity=32.3404255319149, Blast_Score=98, Evalue=7e-21,
Organism=Escherichia coli, GI1788588, Length=214, Percent_Identity=29.9065420560748, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788692, Length=235, Percent_Identity=30.2127659574468, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787259, Length=106, Percent_Identity=34.9056603773585, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71999402, Length=213, Percent_Identity=27.2300469483568, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24585265, Length=218, Percent_Identity=26.605504587156, Blast_Score=80, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 25938; Mature: 25938

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSVVIPIYNEKETIRAIHAAVQAVPIDKEIILVDDYSTDGTREILNELASPSTRVLLH
CCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEE
ERNMGKGAALRTGFGNVLGDIVIIQDADLEYDPQEYAKLTRPILEGKADVVYGSRFVTGE
ECCCCCCCEECCCHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCEEECHH
YRRVLFFWHMLGNKFLTLLSNMMTNMNLTDMETCYKVFRREVLENITIEENRFGFEPEIT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AKIAKMNVRIYEVGISYSGRTYKEGKKIGWKDGVAALKCILKYNLLR
HHHHHEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLSVVIPIYNEKETIRAIHAAVQAVPIDKEIILVDDYSTDGTREILNELASPSTRVLLH
CCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEEE
ERNMGKGAALRTGFGNVLGDIVIIQDADLEYDPQEYAKLTRPILEGKADVVYGSRFVTGE
ECCCCCCCEECCCHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCEEECHH
YRRVLFFWHMLGNKFLTLLSNMMTNMNLTDMETCYKVFRREVLENITIEENRFGFEPEIT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
AKIAKMNVRIYEVGISYSGRTYKEGKKIGWKDGVAALKCILKYNLLR
HHHHHEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA