| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117462
Identifier: 197117462
GI number: 197117462
Start: 1245122
End: 1246171
Strand: Direct
Name: 197117462
Synonym: Gbem_1073
Alternate gene names: NA
Gene position: 1245122-1246171 (Clockwise)
Preceding gene: 197117461
Following gene: 197117463
Centisome position: 26.98
GC content: 55.62
Gene sequence:
>1050_bases ATGCGAAAGGATAAAAAGACCATCTGGATAGACATGGATAATTCGCCGCATGTACCTTTCTTCAGGCCGATCATCGGCGA ACTCGAGGCACGGGGGTACGAGGTGATGTTGACGGCTCGGGATTGCTTCCAGGTCTGTAAATTGGCCGACTTATACAAGA TGGATTACCGAAAAGTCGGAGTCCACTACGGCAAGAACAAGATCATGAAGGGGATTGGGCTGCTGCTGAGGTCGGCGCAG CTTGCTTCATACGTTTTAAAAAGGAGTCCGGACCTTGCACTTTCCCACGGGTCGCGCTCGCAGATGATCCTTTCCTCGGT GCTGCACATTCCCACCGTGATGATGACAGACTATGAATATGCCAAGAGTATTCCCTTTTTTCGCCCTGACTGGCTGATCA TTCCGGAGATGATCCCGGACAGCAGTGTGTGCGACCGCCCCGGCAAAATCCTGCGCTACTCCGGGTTGAAGGAGGATGTC TACGTGCCGGGGTTCCAGCCCGAGCAGGGAGTCCTGGACCAACTGCGCCTTGACCCGACCAAAGTCATCGTTATTGTTCG CCCTCCTGCCACAGAGGCGCATTATTTCAAGGAGGAAAGCCTGCGACTGTTCGAGGAGGCAATGTCCTGGCTCGGGACAG TGGAACAGGTGAGCGTCATCCTACTGCCGCGCAACAGCGGGCAGGCGGACTTCGTTACAAGTAAATGGCCGCAACTGCTG CAGAGCGGGAAGGTGAAAATCCCCGATCAGGTGATCCCCGGGCTCAACCTGATCTGGTACTCGGATCTGGTGATAAGCGG CGGGGGTACCATGAACCGTGAGGCAGCGGCGTTGGGGGTGCCGGTCTACAGTATCTTCCGAGGAGAAATAGGTTCCATCG ACAGGCACCTATCCGATACCGGGCGCTTGACCATGATCGGGAGCGCTGAGGAACTGCGGACCAAGGTGGAACTCAAGAAA AGAAAGCGCTCGCAGGCTTACCAACCGCCGAACCGCCCTGCGTTGAAACAGATTGTCGACATCCTGCACGTCATCCTGAA CCAGGTTTAA
Upstream 100 bases:
>100_bases ACTACATTCCGGACTTCATCTACAAAAAGCTTTAACTACTCCGCTGGGCGGCAGGAGCTTCCTGGATGCCCCCATGAGAA TTACACAGTAAGAGGTCGCA
Downstream 100 bases:
>100_bases AAGACGGCGCGCCGCCAGGAGACCACTGCTTGGACAGTAAGTCCGTGCGCCGAGAAAAGGCGACATAAGCTGCACCAATC TTCTTCGCTGTCGCTGACCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MRKDKKTIWIDMDNSPHVPFFRPIIGELEARGYEVMLTARDCFQVCKLADLYKMDYRKVGVHYGKNKIMKGIGLLLRSAQ LASYVLKRSPDLALSHGSRSQMILSSVLHIPTVMMTDYEYAKSIPFFRPDWLIIPEMIPDSSVCDRPGKILRYSGLKEDV YVPGFQPEQGVLDQLRLDPTKVIVIVRPPATEAHYFKEESLRLFEEAMSWLGTVEQVSVILLPRNSGQADFVTSKWPQLL QSGKVKIPDQVIPGLNLIWYSDLVISGGGTMNREAAALGVPVYSIFRGEIGSIDRHLSDTGRLTMIGSAEELRTKVELKK RKRSQAYQPPNRPALKQIVDILHVILNQV
Sequences:
>Translated_349_residues MRKDKKTIWIDMDNSPHVPFFRPIIGELEARGYEVMLTARDCFQVCKLADLYKMDYRKVGVHYGKNKIMKGIGLLLRSAQ LASYVLKRSPDLALSHGSRSQMILSSVLHIPTVMMTDYEYAKSIPFFRPDWLIIPEMIPDSSVCDRPGKILRYSGLKEDV YVPGFQPEQGVLDQLRLDPTKVIVIVRPPATEAHYFKEESLRLFEEAMSWLGTVEQVSVILLPRNSGQADFVTSKWPQLL QSGKVKIPDQVIPGLNLIWYSDLVISGGGTMNREAAALGVPVYSIFRGEIGSIDRHLSDTGRLTMIGSAEELRTKVELKK RKRSQAYQPPNRPALKQIVDILHVILNQV >Mature_349_residues MRKDKKTIWIDMDNSPHVPFFRPIIGELEARGYEVMLTARDCFQVCKLADLYKMDYRKVGVHYGKNKIMKGIGLLLRSAQ LASYVLKRSPDLALSHGSRSQMILSSVLHIPTVMMTDYEYAKSIPFFRPDWLIIPEMIPDSSVCDRPGKILRYSGLKEDV YVPGFQPEQGVLDQLRLDPTKVIVIVRPPATEAHYFKEESLRLFEEAMSWLGTVEQVSVILLPRNSGQADFVTSKWPQLL QSGKVKIPDQVIPGLNLIWYSDLVISGGGTMNREAAALGVPVYSIFRGEIGSIDRHLSDTGRLTMIGSAEELRTKVELKK RKRSQAYQPPNRPALKQIVDILHVILNQV
Specific function: Unknown
COG id: COG1817
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007152 [H]
Pfam domain/function: PF04007 DUF354 [H]
EC number: NA
Molecular weight: Translated: 39523; Mature: 39523
Theoretical pI: Translated: 9.58; Mature: 9.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKDKKTIWIDMDNSPHVPFFRPIIGELEARGYEVMLTARDCFQVCKLADLYKMDYRKVG CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH VHYGKNKIMKGIGLLLRSAQLASYVLKRSPDLALSHGSRSQMILSSVLHIPTVMMTDYEY HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCEEECHHH AKSIPFFRPDWLIIPEMIPDSSVCDRPGKILRYSGLKEDVYVPGFQPEQGVLDQLRLDPT HHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCE KVIVIVRPPATEAHYFKEESLRLFEEAMSWLGTVEQVSVILLPRNSGQADFVTSKWPQLL EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCCHHHHHHHHH QSGKVKIPDQVIPGLNLIWYSDLVISGGGTMNREAAALGVPVYSIFRGEIGSIDRHLSDT HCCCCCCCHHHCCCCEEEEEEEEEEECCCCCCCCHHHHCCHHHHHHHCCHHHHHHHHCCC GRLTMIGSAEELRTKVELKKRKRSQAYQPPNRPALKQIVDILHVILNQV CCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRKDKKTIWIDMDNSPHVPFFRPIIGELEARGYEVMLTARDCFQVCKLADLYKMDYRKVG CCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHH VHYGKNKIMKGIGLLLRSAQLASYVLKRSPDLALSHGSRSQMILSSVLHIPTVMMTDYEY HHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHCCCEEECHHH AKSIPFFRPDWLIIPEMIPDSSVCDRPGKILRYSGLKEDVYVPGFQPEQGVLDQLRLDPT HHCCCCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCE KVIVIVRPPATEAHYFKEESLRLFEEAMSWLGTVEQVSVILLPRNSGQADFVTSKWPQLL EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEEEEEECCCCCCCCHHHHHHHHH QSGKVKIPDQVIPGLNLIWYSDLVISGGGTMNREAAALGVPVYSIFRGEIGSIDRHLSDT HCCCCCCCHHHCCCCEEEEEEEEEEECCCCCCCCHHHHCCHHHHHHHCCHHHHHHHHCCC GRLTMIGSAEELRTKVELKKRKRSQAYQPPNRPALKQIVDILHVILNQV CCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]