| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is bcsA [H]
Identifier: 197117418
GI number: 197117418
Start: 1197528
End: 1198577
Strand: Direct
Name: bcsA [H]
Synonym: Gbem_1028
Alternate gene names: 197117418
Gene position: 1197528-1198577 (Clockwise)
Preceding gene: 197117417
Following gene: 197117420
Centisome position: 25.95
GC content: 64.0
Gene sequence:
>1050_bases ATGAACAGCAATGTCTTCGTGGGCTCCATCGCCACCGTCGTCCCGCCGTTTTCGGTGGACCAGCAGGCGGCGGCGGCGCT GATCAAGTCGCATTTCAAGGAAAGCCTGACCGCGCGCGGCCTTGGGCTGATTCGCGCCACCTTCAACCATCCCAGCATCA AGAAAAGGCATTTCGCCGTCGACACCCCGGCGCAGATCTTCACCGAGACTCCCGATGAGCGGGTAGAGCGTTTCACGGAG CAGGCGGTCCGGCTGGCAGAGCAGGCGGTGCTGCGGGCGCTTGATAAGGTGGGGGTGGGGGTGAGGGAGGTGAACGGGCT GGTGCTGAACACCTGCACCGGCTACATCTGCCCCGGCCTTTCCAGCTATGTCGCCGAGCGCCTGGGGCTTCGCTGCGACG CGAGGCTGTACGATCTGGTCGGAAGCGGCTGCGGCGGAGCGGTCCCCAACCTGCAGGTGGCCGAGTCCATCTTGAGGACG ACCGGGGGCATCGTGGTGAGCGTCTCGGTCGAGATCTGCAGCGCCGCCTTCCAGATGGGGAACGACTTAAGCCTCATACT CTCCAATGCGCTCTTCGGCGACGGCGCCGCGGCAGCTGTTCTCTGGGAGAAACCGGCCGGTTTCGAGTTGGTCGCCTCCG CCGGACGCTACGTGCCGGAAGAGCGCGAAGCAATCCGCTTCGTGCACCGGCAGGGACAGCTCCACAACCAGCTCTCCACC GACCTCCCGGAGCTGGTAAGAAAGGCCGCGGCTGAGGTGGTAGGCGATCTTCTGGGAAGACATTCCCTCTCCATCGGCGA CATCGGCGGCTGGGCGCTCCATACCGGCGGTGAAAAGATCGTGAACGCGGTGCGGGACGAGATCGGGATCGACGAATCGA AACTATGGGCGACCCGGAAGGTGCTGGAACAGTACGGCAACATGTCCTCGCCCACCGTCTGGTTCGTGGTGGATGAACTG CTGCAGAGCGGATTGCGCAAGGGGGAGTGGTGCGTGATGCTCGCCTACGGCGCCGGTCTTTCCGCGCATGCCTATTTGCT GAGAGGCTAA
Upstream 100 bases:
>100_bases CGGGTGGACCCTCTCTACCGCGACGAGATGCTGCGACTGTACCGCGACGCTTTCGACGAAATGTATTCCGGTGAATTGTG GGACTGAGGGGGGATCTGTC
Downstream 100 bases:
>100_bases AGGCAGGGGCTGGGGGCTAGGGGCTGGGGGATAGGCAGAACCTTCAAAAACGGTGGCGGGAGCGGAACTGGTCGCCTAGG AACCAGCCGCGTACCAGGTC
Product: polyketide synthase, type III
Products: NA
Alternate protein names: Naringenin-chalcone synthase [H]
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MNSNVFVGSIATVVPPFSVDQQAAAALIKSHFKESLTARGLGLIRATFNHPSIKKRHFAVDTPAQIFTETPDERVERFTE QAVRLAEQAVLRALDKVGVGVREVNGLVLNTCTGYICPGLSSYVAERLGLRCDARLYDLVGSGCGGAVPNLQVAESILRT TGGIVVSVSVEICSAAFQMGNDLSLILSNALFGDGAAAAVLWEKPAGFELVASAGRYVPEEREAIRFVHRQGQLHNQLST DLPELVRKAAAEVVGDLLGRHSLSIGDIGGWALHTGGEKIVNAVRDEIGIDESKLWATRKVLEQYGNMSSPTVWFVVDEL LQSGLRKGEWCVMLAYGAGLSAHAYLLRG
Sequences:
>Translated_349_residues MNSNVFVGSIATVVPPFSVDQQAAAALIKSHFKESLTARGLGLIRATFNHPSIKKRHFAVDTPAQIFTETPDERVERFTE QAVRLAEQAVLRALDKVGVGVREVNGLVLNTCTGYICPGLSSYVAERLGLRCDARLYDLVGSGCGGAVPNLQVAESILRT TGGIVVSVSVEICSAAFQMGNDLSLILSNALFGDGAAAAVLWEKPAGFELVASAGRYVPEEREAIRFVHRQGQLHNQLST DLPELVRKAAAEVVGDLLGRHSLSIGDIGGWALHTGGEKIVNAVRDEIGIDESKLWATRKVLEQYGNMSSPTVWFVVDEL LQSGLRKGEWCVMLAYGAGLSAHAYLLRG >Mature_349_residues MNSNVFVGSIATVVPPFSVDQQAAAALIKSHFKESLTARGLGLIRATFNHPSIKKRHFAVDTPAQIFTETPDERVERFTE QAVRLAEQAVLRALDKVGVGVREVNGLVLNTCTGYICPGLSSYVAERLGLRCDARLYDLVGSGCGGAVPNLQVAESILRT TGGIVVSVSVEICSAAFQMGNDLSLILSNALFGDGAAAAVLWEKPAGFELVASAGRYVPEEREAIRFVHRQGQLHNQLST DLPELVRKAAAEVVGDLLGRHSLSIGDIGGWALHTGGEKIVNAVRDEIGIDESKLWATRKVLEQYGNMSSPTVWFVVDEL LQSGLRKGEWCVMLAYGAGLSAHAYLLRG
Specific function: Catalyzes The Condensation Reaction Of Fatty Acid Synthesis By The Addition To An Acyl Acceptor Of Two Carbons From Malonyl-Acp. Catalyzes The First Condensation Reaction Which Initiates Fatty Acid Synthesis And May Therefore Play A Role In Governing The
COG id: COG3424
COG function: function code Q; Predicted naringenin-chalcone synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chalcone/stilbene synthases family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012328 - InterPro: IPR018088 - InterPro: IPR001099 - InterPro: IPR011141 - InterPro: IPR016039 - InterPro: IPR016038 [H]
Pfam domain/function: PF02797 Chal_sti_synt_C; PF00195 Chal_sti_synt_N [H]
EC number: =2.3.1.74 [H]
Molecular weight: Translated: 37483; Mature: 37483
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSNVFVGSIATVVPPFSVDQQAAAALIKSHFKESLTARGLGLIRATFNHPSIKKRHFAV CCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCCEEC DTPAQIFTETPDERVERFTEQAVRLAEQAVLRALDKVGVGVREVNGLVLNTCTGYICPGL CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHCCCH SSYVAERLGLRCDARLYDLVGSGCGGAVPNLQVAESILRTTGGIVVSVSVEICSAAFQMG HHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHCC NDLSLILSNALFGDGAAAAVLWEKPAGFELVASAGRYVPEEREAIRFVHRQGQLHNQLST CCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC DLPELVRKAAAEVVGDLLGRHSLSIGDIGGWALHTGGEKIVNAVRDEIGIDESKLWATRK CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHH VLEQYGNMSSPTVWFVVDELLQSGLRKGEWCVMLAYGAGLSAHAYLLRG HHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECC >Mature Secondary Structure MNSNVFVGSIATVVPPFSVDQQAAAALIKSHFKESLTARGLGLIRATFNHPSIKKRHFAV CCCCEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCCCCCCCEEC DTPAQIFTETPDERVERFTEQAVRLAEQAVLRALDKVGVGVREVNGLVLNTCTGYICPGL CCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEECCCCHHCCCH SSYVAERLGLRCDARLYDLVGSGCGGAVPNLQVAESILRTTGGIVVSVSVEICSAAFQMG HHHHHHHHCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHCC NDLSLILSNALFGDGAAAAVLWEKPAGFELVASAGRYVPEEREAIRFVHRQGQLHNQLST CCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHC DLPELVRKAAAEVVGDLLGRHSLSIGDIGGWALHTGGEKIVNAVRDEIGIDESKLWATRK CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCHHHHHHHHH VLEQYGNMSSPTVWFVVDELLQSGLRKGEWCVMLAYGAGLSAHAYLLRG HHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]