| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is yqfF [H]
Identifier: 197117387
GI number: 197117387
Start: 1154014
End: 1156383
Strand: Direct
Name: yqfF [H]
Synonym: Gbem_0997
Alternate gene names: 197117387
Gene position: 1154014-1156383 (Clockwise)
Preceding gene: 197117384
Following gene: 308535206
Centisome position: 25.0
GC content: 62.57
Gene sequence:
>2370_bases ATGCCCACCGAAAGCGGCGACAAAAAACAGAAGAGCTCACTCATCCGGCTCTGTGACAGCTGGTTGGAAGCAGTTGCCCA AGGCTTCTCCTGTGACAAGTATGAAAAGCGCAGCCGCTTTATCATGCTCTTCCTCACAGCTTTATTCCTCACCCTGCTCA TCATCCCGAGTCCGCAGTTCCTCACGGTCAACTACCGCGAAGGCGACATCGCTACTTCGGATATCCGCGCCACCCAGGAT TACCTCATCGAGGATCTCCTGCTCACCGAGAAAAAGCGCGCCGAGGCCGAGGCCGTGGCCCCGTTTATCTACAGTCTCGC CCAAAACGGAAACATAGACCTGGTGCGCCGCTTCGAGGAGGCGCTGGAACTCATGCGCGACTCCGGGCAGGGGGAGGCGC GCCGCAACGCCATCGCCGGCGTCCTGGGGGTCGACATCTCGACACAGGAGTTCGGGGCGCTGTCGCGGATCAGGCAGGAG CGGGCCTTTCTCTCCGATCTGGGAAGGCAGCTCGCCCCCGTTTACCGTCATCGCATCGTCGCCGACCGCTCCAATTTCGC CGCCGATCTGCGCCACGGCATCGTGGTCCTGGACGAGACCACAAGGCAGGAAGTGGCGGGTGGGGACTACTCCTCCAGCA TCGACCTCCCAGCGGCCAGGCGCGCCTTTCGCGGCGTCTACCTGACCCAGGGCGCCTCGGCGCATGACCTCGAGATTCTC AAGGGGGTGGCGCAGCGGATGATCGCCCCCAACCTGAGCTTCGACCGCAACTTAACCGACGACAAGAAAAGCGAGGCGCG CGCCGCGGTGCGCCCGGTCCTTTTCAAGATGAAGCGCGGCGAGATGATCGTCCGGGTCGGGGAGCGGGTCACCTCCGAAC AGGCGATGAAGCTGGAGAAGATCTACAAGGCGAAGAACCGCGCCCCGGTCCTCACCGGGCTCGGCATCTTCGGGCTGGTC GTCGTGCTCTGCTACGTCCCGTTTCGCTTCGGCCGCAAGAACATCCGCAAGTTCAGCCCGAGCAACAAGGACATCCTGCT TTTGTCGCTCTTGACGGTGGGGAACTTCGCGGTGCTGAAGCTGGTCTCCGCCGTTTCCACCGCCATGGGGGGACTCTTCC CCAGCATCGACACCGCGAGCTACTTCTACGTCTTCCCCTTTGCCGCCAGCGCCATCATCGTCAGGATCATCCTCAACTCC GAGGTAGCGCTGGTTTACTGCGCCGTCACCGCCCCCCTCACCGGCATCATGCTGAACAACTCGCTGCTGGTGGTGATCTA CGCCCTCTTGGGGGGGATCGTGGGAGCCCACGGCGTGCGCCAGTGCAAGGAGCGCGGGACCATCTACAGCGCCGGTTTCA AGGTGAGCGTGGTCAACATGGCGCTAGCCGTCTGCTTCTACGTCTACAGCGACAGCCATTTCTCGCTGCAGACCGTTTAC TGCGTAGCCTTCGCCCTTCTGGGGGGCCTCATCAACGCGGTCTTCGCCTCGGGAACCATCCCGCTCATCGAGGCGCTCTT CCAGTACACGACGGACGTGAAGCTCCTCGAACTCGCCAACCTCAATTCGCCGCTTTTGCGCGAGCTGATGATCCGCGCCC CCGGGACCTACCACCATAGCGTGCTCGTGGGGAACATGGTGGAGGCGGGAGCCGAGGCGATCAACGCGAACCCGCTCCTG GCCCGCGTAGCCGCCTACTACCACGACGTCGGCAAGCTCAAGAAGCCGCAGTACTTCATCGAGAACATCCGCGACGGCGA GAACCGCCACGACAAGCTCTCACCGAGCATGAGCGCGCTGATCCTCATCTCGCACATGAAGGAAGGGGTGGAACTCGCCA AGGAGCACCGGGTAGGGCAGCCGATCATCGAGATCATCCGCCAGTCCCACGGCACCTCCCTGATCAGCTACTTCTACCTG AAGGCGAAGGGACTGGAGACCCCGGGCGCGCCGCCGGTTGAGGAGCGGGACTTCCGCTACCCCGGCCCCAAGCCGCAGAC CAGGGAAGCCGGCCTCGTGCTCCTGGCGGACTGCGTAGAGGCCGCCTCGCGCACCCTCACCGACCCGACCCCCGCCAGGA TCCAGGGGATGGTGCAGAAGATCATCAACAACATCTTCATCGACGGGCAGCTCGACGAGTGCGAACTGACGCTCAAGAAC CTGCACGAGATAGCGAAGAGTTTCAACCAGATACTTGCCGGGATCTACCACCAGCGCATAGACTACCCGGAGCCGGCCTA CAAGGAGAAGAACATTGTCAAGAAGTGCCCAGAGGATTGCGATAGCGAACCGCCAAAGGCGGATCCCGGTCGGGACGACG GCGTTGCGAAAGGTGGCGCAGAGGATCTTAGACGCCTTGGGATGTCCTGA
Upstream 100 bases:
>100_bases TTTTGGTTTAGATTGACAGTAATCCGGCATTAGATATATATTGTCCCCTTGCGTGCCAACCTGCAGCCTCTGTCCTCATG ACACGGGAACTATAGATATA
Downstream 100 bases:
>100_bases GGCCGAACTCTCCATCAGCATCGTCGGCGACCGCGCCATCAGGGTCATCAACCGCGATTACCTGGGGCGGGACAAGGCAA CCAACGTGATTTCGTTCGCC
Product: membrane-associated metal-dependent phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 789; Mature: 788
Protein sequence:
>789_residues MPTESGDKKQKSSLIRLCDSWLEAVAQGFSCDKYEKRSRFIMLFLTALFLTLLIIPSPQFLTVNYREGDIATSDIRATQD YLIEDLLLTEKKRAEAEAVAPFIYSLAQNGNIDLVRRFEEALELMRDSGQGEARRNAIAGVLGVDISTQEFGALSRIRQE RAFLSDLGRQLAPVYRHRIVADRSNFAADLRHGIVVLDETTRQEVAGGDYSSSIDLPAARRAFRGVYLTQGASAHDLEIL KGVAQRMIAPNLSFDRNLTDDKKSEARAAVRPVLFKMKRGEMIVRVGERVTSEQAMKLEKIYKAKNRAPVLTGLGIFGLV VVLCYVPFRFGRKNIRKFSPSNKDILLLSLLTVGNFAVLKLVSAVSTAMGGLFPSIDTASYFYVFPFAASAIIVRIILNS EVALVYCAVTAPLTGIMLNNSLLVVIYALLGGIVGAHGVRQCKERGTIYSAGFKVSVVNMALAVCFYVYSDSHFSLQTVY CVAFALLGGLINAVFASGTIPLIEALFQYTTDVKLLELANLNSPLLRELMIRAPGTYHHSVLVGNMVEAGAEAINANPLL ARVAAYYHDVGKLKKPQYFIENIRDGENRHDKLSPSMSALILISHMKEGVELAKEHRVGQPIIEIIRQSHGTSLISYFYL KAKGLETPGAPPVEERDFRYPGPKPQTREAGLVLLADCVEAASRTLTDPTPARIQGMVQKIINNIFIDGQLDECELTLKN LHEIAKSFNQILAGIYHQRIDYPEPAYKEKNIVKKCPEDCDSEPPKADPGRDDGVAKGGAEDLRRLGMS
Sequences:
>Translated_789_residues MPTESGDKKQKSSLIRLCDSWLEAVAQGFSCDKYEKRSRFIMLFLTALFLTLLIIPSPQFLTVNYREGDIATSDIRATQD YLIEDLLLTEKKRAEAEAVAPFIYSLAQNGNIDLVRRFEEALELMRDSGQGEARRNAIAGVLGVDISTQEFGALSRIRQE RAFLSDLGRQLAPVYRHRIVADRSNFAADLRHGIVVLDETTRQEVAGGDYSSSIDLPAARRAFRGVYLTQGASAHDLEIL KGVAQRMIAPNLSFDRNLTDDKKSEARAAVRPVLFKMKRGEMIVRVGERVTSEQAMKLEKIYKAKNRAPVLTGLGIFGLV VVLCYVPFRFGRKNIRKFSPSNKDILLLSLLTVGNFAVLKLVSAVSTAMGGLFPSIDTASYFYVFPFAASAIIVRIILNS EVALVYCAVTAPLTGIMLNNSLLVVIYALLGGIVGAHGVRQCKERGTIYSAGFKVSVVNMALAVCFYVYSDSHFSLQTVY CVAFALLGGLINAVFASGTIPLIEALFQYTTDVKLLELANLNSPLLRELMIRAPGTYHHSVLVGNMVEAGAEAINANPLL ARVAAYYHDVGKLKKPQYFIENIRDGENRHDKLSPSMSALILISHMKEGVELAKEHRVGQPIIEIIRQSHGTSLISYFYL KAKGLETPGAPPVEERDFRYPGPKPQTREAGLVLLADCVEAASRTLTDPTPARIQGMVQKIINNIFIDGQLDECELTLKN LHEIAKSFNQILAGIYHQRIDYPEPAYKEKNIVKKCPEDCDSEPPKADPGRDDGVAKGGAEDLRRLGMS >Mature_788_residues PTESGDKKQKSSLIRLCDSWLEAVAQGFSCDKYEKRSRFIMLFLTALFLTLLIIPSPQFLTVNYREGDIATSDIRATQDY LIEDLLLTEKKRAEAEAVAPFIYSLAQNGNIDLVRRFEEALELMRDSGQGEARRNAIAGVLGVDISTQEFGALSRIRQER AFLSDLGRQLAPVYRHRIVADRSNFAADLRHGIVVLDETTRQEVAGGDYSSSIDLPAARRAFRGVYLTQGASAHDLEILK GVAQRMIAPNLSFDRNLTDDKKSEARAAVRPVLFKMKRGEMIVRVGERVTSEQAMKLEKIYKAKNRAPVLTGLGIFGLVV VLCYVPFRFGRKNIRKFSPSNKDILLLSLLTVGNFAVLKLVSAVSTAMGGLFPSIDTASYFYVFPFAASAIIVRIILNSE VALVYCAVTAPLTGIMLNNSLLVVIYALLGGIVGAHGVRQCKERGTIYSAGFKVSVVNMALAVCFYVYSDSHFSLQTVYC VAFALLGGLINAVFASGTIPLIEALFQYTTDVKLLELANLNSPLLRELMIRAPGTYHHSVLVGNMVEAGAEAINANPLLA RVAAYYHDVGKLKKPQYFIENIRDGENRHDKLSPSMSALILISHMKEGVELAKEHRVGQPIIEIIRQSHGTSLISYFYLK AKGLETPGAPPVEERDFRYPGPKPQTREAGLVLLADCVEAASRTLTDPTPARIQGMVQKIINNIFIDGQLDECELTLKNL HEIAKSFNQILAGIYHQRIDYPEPAYKEKNIVKKCPEDCDSEPPKADPGRDDGVAKGGAEDLRRLGMS
Specific function: Unknown
COG id: COG1480
COG function: function code R; Predicted membrane-associated HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011624 - InterPro: IPR011621 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF07698 7TM-7TMR_HD; PF07697 7TMR-HDED [H]
EC number: NA
Molecular weight: Translated: 87117; Mature: 86986
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTESGDKKQKSSLIRLCDSWLEAVAQGFSCDKYEKRSRFIMLFLTALFLTLLIIPSPQF CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE LTVNYREGDIATSDIRATQDYLIEDLLLTEKKRAEAEAVAPFIYSLAQNGNIDLVRRFEE EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ALELMRDSGQGEARRNAIAGVLGVDISTQEFGALSRIRQERAFLSDLGRQLAPVYRHRIV HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADRSNFAADLRHGIVVLDETTRQEVAGGDYSSSIDLPAARRAFRGVYLTQGASAHDLEIL HCCHHHHHHHHCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHCCEEEECCCCCHHHHHH KGVAQRMIAPNLSFDRNLTDDKKSEARAAVRPVLFKMKRGEMIVRVGERVTSEQAMKLEK HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IYKAKNRAPVLTGLGIFGLVVVLCYVPFRFGRKNIRKFSPSNKDILLLSLLTVGNFAVLK HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEHHHHHCHHHHHH LVSAVSTAMGGLFPSIDTASYFYVFPFAASAIIVRIILNSEVALVYCAVTAPLTGIMLNN HHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEHHHCHHHHHCCC SLLVVIYALLGGIVGAHGVRQCKERGTIYSAGFKVSVVNMALAVCFYVYSDSHFSLQTVY HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHH CVAFALLGGLINAVFASGTIPLIEALFQYTTDVKLLELANLNSPLLRELMIRAPGTYHHS HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCHH VLVGNMVEAGAEAINANPLLARVAAYYHDVGKLKKPQYFIENIRDGENRHDKLSPSMSAL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHCCCHHHHH ILISHMKEGVELAKEHRVGQPIIEIIRQSHGTSLISYFYLKAKGLETPGAPPVEERDFRY HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC PGPKPQTREAGLVLLADCVEAASRTLTDPTPARIQGMVQKIINNIFIDGQLDECELTLKN CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHH LHEIAKSFNQILAGIYHQRIDYPEPAYKEKNIVKKCPEDCDSEPPKADPGRDDGVAKGGA HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCH EDLRRLGMS HHHHHCCCC >Mature Secondary Structure PTESGDKKQKSSLIRLCDSWLEAVAQGFSCDKYEKRSRFIMLFLTALFLTLLIIPSPQF CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE LTVNYREGDIATSDIRATQDYLIEDLLLTEKKRAEAEAVAPFIYSLAQNGNIDLVRRFEE EEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH ALELMRDSGQGEARRNAIAGVLGVDISTQEFGALSRIRQERAFLSDLGRQLAPVYRHRIV HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADRSNFAADLRHGIVVLDETTRQEVAGGDYSSSIDLPAARRAFRGVYLTQGASAHDLEIL HCCHHHHHHHHCCEEEEECCHHHHHCCCCCCCCCCCHHHHHHHCCEEEECCCCCHHHHHH KGVAQRMIAPNLSFDRNLTDDKKSEARAAVRPVLFKMKRGEMIVRVGERVTSEQAMKLEK HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IYKAKNRAPVLTGLGIFGLVVVLCYVPFRFGRKNIRKFSPSNKDILLLSLLTVGNFAVLK HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEHHHHHCHHHHHH LVSAVSTAMGGLFPSIDTASYFYVFPFAASAIIVRIILNSEVALVYCAVTAPLTGIMLNN HHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEEHHHCHHHHHCCC SLLVVIYALLGGIVGAHGVRQCKERGTIYSAGFKVSVVNMALAVCFYVYSDSHFSLQTVY HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHH CVAFALLGGLINAVFASGTIPLIEALFQYTTDVKLLELANLNSPLLRELMIRAPGTYHHS HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCCCCCHH VLVGNMVEAGAEAINANPLLARVAAYYHDVGKLKKPQYFIENIRDGENRHDKLSPSMSAL HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHCCCHHHHH ILISHMKEGVELAKEHRVGQPIIEIIRQSHGTSLISYFYLKAKGLETPGAPPVEERDFRY HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC PGPKPQTREAGLVLLADCVEAASRTLTDPTPARIQGMVQKIINNIFIDGQLDECELTLKN CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHH LHEIAKSFNQILAGIYHQRIDYPEPAYKEKNIVKKCPEDCDSEPPKADPGRDDGVAKGGA HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCH EDLRRLGMS HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]