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The map label for this gene is hfq [H]

Identifier: 197117370

GI number: 197117370

Start: 1138104

End: 1138328

Strand: Direct

Name: hfq [H]

Synonym: Gbem_0980

Alternate gene names: 197117370

Gene position: 1138104-1138328 (Clockwise)

Preceding gene: 197117369

Following gene: 197117371

Centisome position: 24.66

GC content: 43.11

Gene sequence:

>225_bases
ATGCCGAAAACGCCTTTTAACATCCAGGACCAATATCTGAATCAGTCTCGTAAGGAACGCGTAAAGGTTTTGGTGCAATT
AATGTCCGGTGAGAAGCTTGAAGGGCACATCAAATCCTTCGACAATTTTTCCGTTCTTATGGAAGTTCACGGCGATATCC
TCATTTATAAACATGCTATCTGCAGCATCACCTCAGTAGATGGCGTGTTCCGTCTACATCAGTAA

Upstream 100 bases:

>100_bases
GTTCGGCAAGGAAAATGATATTTATTGGCTTGAATATCCCGGAAGTTTTGCTACTATCCTTGGACATGTGATTGAATTTC
TTGCGTAAGGGAGCGGAATC

Downstream 100 bases:

>100_bases
TTATTCAGCCAACTTCATCGCTATATCCAGTCCGCTACGGATAAAATACTTTCCAAAGCAGCCATGGGTTAGCGGGAAAC
CTCTCCATCCTCAGCCGGCT

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 74; Mature: 73

Protein sequence:

>74_residues
MPKTPFNIQDQYLNQSRKERVKVLVQLMSGEKLEGHIKSFDNFSVLMEVHGDILIYKHAICSITSVDGVFRLHQ

Sequences:

>Translated_74_residues
MPKTPFNIQDQYLNQSRKERVKVLVQLMSGEKLEGHIKSFDNFSVLMEVHGDILIYKHAICSITSVDGVFRLHQ
>Mature_73_residues
PKTPFNIQDQYLNQSRKERVKVLVQLMSGEKLEGHIKSFDNFSVLMEVHGDILIYKHAICSITSVDGVFRLHQ

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8559; Mature: 8428

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTPFNIQDQYLNQSRKERVKVLVQLMSGEKLEGHIKSFDNFSVLMEVHGDILIYKHAI
CCCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHEECCCCEEEEHHHH
CSITSVDGVFRLHQ
HHHCCCCCEEEECC
>Mature Secondary Structure 
PKTPFNIQDQYLNQSRKERVKVLVQLMSGEKLEGHIKSFDNFSVLMEVHGDILIYKHAI
CCCCCCCCHHHHCHHHHHHHHHHHHHHCCCCCCCHHCCCCCHHHHEECCCCEEEEHHHH
CSITSVDGVFRLHQ
HHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA