Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197117371

Identifier: 197117371

GI number: 197117371

Start: 1138598

End: 1139896

Strand: Direct

Name: 197117371

Synonym: Gbem_0981

Alternate gene names: NA

Gene position: 1138598-1139896 (Clockwise)

Preceding gene: 197117370

Following gene: 197117373

Centisome position: 24.67

GC content: 60.89

Gene sequence:

>1299_bases
ATGTCAGGCCTTATTGTCGACAGGGTGATGCCGGGAAGCATCGCCGATGAACTTGAGATCGAGCCGGGAGATCGGCTCAT
ATCGGTGAACGGGCACCCGCTGCGCGACGTCATTGATTACAACTACTATTCGGCGGACGACCTGCTCGATCTCGAACTCG
AAAAGGGGGACGGCGAGCTTTGGGAACTGGAGGTGGAGCGGGAGGAAGGTGAACCGCTGGGCCTCTCCTTCGAGGCTCCT
CTTCCGGCGCGCTGTGGCAACAACTGCGTCTTCTGCTTCGTACACCAGCTCCCCAAGGGGCTGCGCGGCCCGCTCTACGT
CAAGGACGAGGATTACCGGCTCTCCTTTCTCTACGGAAATTACGTGACGCTGGCCAACATCGGCCGTGCCGAGCTGGACC
GGATCAAGGAGCAGCGCCTGTCGCCGCTCTACATCTCGGTTCACGCCACCGAGCCTAAATTAAGGGAGGAGTTGCTGGGC
AAAAGCGGCATCCTCCCCATACTCGACGTCATGAAGGAACTGGCCGAGGCGCGGATAACCATGCATACCCAGGTGGTGCT
CTGCCCAGGATGGAACGATGGGGAGGCATTTGCCCGTACCGTCGAGGATCTGGCGTCGATGTATCCGGCGGTAGCCTCGC
TGGCGGTGGTTCCGGTGGGGCTCACCGAGCACCGGAAGCATCTTCCGCCGCTTGCCCCGTTGACCAGAGAGTTCGCAGCC
TCCTTCATCGAGGAATGGAGCGGCAAGGCGCGGCTTCTTGAAGAGAGGCTCGGAGAGCCATTTCTGTTTCTCGCCGACGA
GTTTTATATCAAGGGGGAGATTCCCTTCCCATCCTTGGAGAGCTACGGCGATCTGCCACAGTTGGAAAACGGCGTAGGAA
TGATCCCTCTCTTTCTGTCGGAGGCAGAGCAGGTGCTGGAGGACGCCGAACCGGTGCCGGGCGCGCGTGTCACGGTGGTC
AGCGGCGAGTCGCCCTACAACTACCTGGCGGGATTTCTGGCGCAGCTCTCGACAGCGACCGGCGCCTCCGTCGTTGCGGT
GGCGGTGAAAAACAGGCTGTTCGGCCCGTCGGTCACTGTGACCGGACTCGTCTGCGGCAGGGACATCATTTCCGCGCTTA
AGGGCGTAGAACTGGGAGATCTGGTGCTGGTCCCCGACGTCATGCTTAAGGAGGGGGAGGGGGTATTTCTCGACGACCTG
ACGGTGGACGACCTGGAGCGGGAGTTGGGGAAGACGGTTCAGGTGGTGGAATCGACCCCCTATGGCATCTATGACGCTTT
AGCTGACATGCGGGAGTAG

Upstream 100 bases:

>100_bases
TCTGGAAGAGTGCCCGACGCCACAGCGCTGTCGCAATCGGATTCTTACGCAGCCGGTATAGCAGGGCGCTTGCCAAAGGG
ACGCGAAGAGGAGGAAGTGG

Downstream 100 bases:

>100_bases
CGAAGAAGGTTTGCGGCAGGATTGAAGCGGGAAGCCGGCGGGGGGATTGAACCCTCCGCCGGCTTTTTTTGTTAACGGCT
CATGGCGTCGATGGCGTCGA

Product: iron-sulfur cluster-binding oxidoreductase

Products: NA

Alternate protein names: FeS-Containing Oxidoreductase; FeS-Containing Cyanobacterial-Specific Oxidoreductase; PDZ Domain Protein; FeS-Containing Organism-Specific Oxidoreductase; FeS-Containing-Specific Oxidoreductase; Response Regulator Receiver Protein; PDZ Domain-Containing Protein

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MSGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGELWELEVEREEGEPLGLSFEAP
LPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGNYVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLG
KSGILPILDVMKELAEARITMHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA
SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLSEAEQVLEDAEPVPGARVTVV
SGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTVTGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDL
TVDDLERELGKTVQVVESTPYGIYDALADMRE

Sequences:

>Translated_432_residues
MSGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGELWELEVEREEGEPLGLSFEAP
LPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGNYVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLG
KSGILPILDVMKELAEARITMHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA
SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLSEAEQVLEDAEPVPGARVTVV
SGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTVTGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDL
TVDDLERELGKTVQVVESTPYGIYDALADMRE
>Mature_431_residues
SGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGELWELEVEREEGEPLGLSFEAPL
PARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGNYVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLGK
SGILPILDVMKELAEARITMHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAAS
FIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLSEAEQVLEDAEPVPGARVTVVS
GESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTVTGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDLT
VDDLERELGKTVQVVESTPYGIYDALADMRE

Specific function: Unknown

COG id: COG1625

COG function: function code C; Fe-S oxidoreductase, related to NifB/MoaA family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47465; Mature: 47334

Theoretical pI: Translated: 4.16; Mature: 4.16

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGEL
CCCEEECCCCCCCCCCCEEECCCCEEEEECCCCHHHHHCCCCCCCCCEEEEEEECCCCCE
WELEVEREEGEPLGLSFEAPLPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGN
EEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEEHHCCCCCCCCEEEECCCEEEEEEECC
YVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLGKSGILPILDVMKELAEARIT
EEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHEE
MHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHCCCCCCHHHHHHHH
SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLS
HHHHHHCCHHHHHHHHCCCCEEEEECEEEEECCCCCCCCHHCCCCCCCCCCCCEEHHHHH
EAEQVLEDAEPVPGARVTVVSGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTV
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCEE
TGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDLTVDDLERELGKTVQVVESTP
EEEHHHHHHHHHHCCCCCCCEEEECHHHHCCCCCEEEECCCHHHHHHHHCCCEEEECCCC
YGIYDALADMRE
CHHHHHHHHHCC
>Mature Secondary Structure 
SGLIVDRVMPGSIADELEIEPGDRLISVNGHPLRDVIDYNYYSADDLLDLELEKGDGEL
CCEEECCCCCCCCCCCEEECCCCEEEEECCCCHHHHHCCCCCCCCCEEEEEEECCCCCE
WELEVEREEGEPLGLSFEAPLPARCGNNCVFCFVHQLPKGLRGPLYVKDEDYRLSFLYGN
EEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEEHHCCCCCCCCEEEECCCEEEEEEECC
YVTLANIGRAELDRIKEQRLSPLYISVHATEPKLREELLGKSGILPILDVMKELAEARIT
EEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCCCHHHHHHHHHHHHHHEE
MHTQVVLCPGWNDGEAFARTVEDLASMYPAVASLAVVPVGLTEHRKHLPPLAPLTREFAA
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHCCCCCCHHHHHHHH
SFIEEWSGKARLLEERLGEPFLFLADEFYIKGEIPFPSLESYGDLPQLENGVGMIPLFLS
HHHHHHCCHHHHHHHHCCCCEEEEECEEEEECCCCCCCCHHCCCCCCCCCCCCEEHHHHH
EAEQVLEDAEPVPGARVTVVSGESPYNYLAGFLAQLSTATGASVVAVAVKNRLFGPSVTV
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCEE
TGLVCGRDIISALKGVELGDLVLVPDVMLKEGEGVFLDDLTVDDLERELGKTVQVVESTP
EEEHHHHHHHHHHCCCCCCCEEEECHHHHCCCCCEEEECCCHHHHHHHHCCCEEEECCCC
YGIYDALADMRE
CHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA