| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is rcp1 [H]
Identifier: 197117364
GI number: 197117364
Start: 1131731
End: 1132219
Strand: Direct
Name: rcp1 [H]
Synonym: Gbem_0974
Alternate gene names: 197117364
Gene position: 1131731-1132219 (Clockwise)
Preceding gene: 197117363
Following gene: 197117365
Centisome position: 24.52
GC content: 51.12
Gene sequence:
>489_bases ATGGCTGCGGAGACTAAGGAGAGGCTGGGTACGTTCAAACTAAAACGTATCCTCCTTGTTGAAGATAATGCTAACGATGC GGAGCTCACGATGGAGGCTTTGGCCGAGCACAATTTAGCGAACGAGGTGGATATTGTCCGTGACGGGGCCGAAGCGCTCG ATTACCTTCAGCAAAAGGGAAAATATGCAGACAGCGAAGCTGGGAACCTTGCTGTCATCCTGCTCGATCTCAAGCTGCCT AAGGTGGACGGGCTCGAGGTACTGAGCGTTATCAAGGCGGATGAAAAATTACGGTGCATTCCCGTGGTGGTTCTAACCTC CTCGCGTGAAGAGAAGGATGTAGTGGAAAGCTACCGACTTGGTGTCAACGCTTATGTGGTCAAACCGGTAAATTTCAACG AATTCATTACAGCTGTAAAGGAGATAGGCGCATTCTGGGCCATAGTGAACGAGCCGCCTCCGGTTCAGCACAGAGGTGGG ATCAGATGA
Upstream 100 bases:
>100_bases CAGTATCAGCAGTTGCGTGTAAGGATTGGAAGACATGGTAAAATCATAACGTCTTTCAGTAGCTGCGTGTTCAGCTGGAA GGAGTGTCTTGGAGGTACTC
Downstream 100 bases:
>100_bases CGCAGCGATTGCGCATACTGCATCTAGAGGACGATCCGATGGATGCCGAACTCGTCTTGATGGCTCTTACCGCAGAGGGG CTCGATTGTGAGGTCCAGGT
Product: response receiver
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MAAETKERLGTFKLKRILLVEDNANDAELTMEALAEHNLANEVDIVRDGAEALDYLQQKGKYADSEAGNLAVILLDLKLP KVDGLEVLSVIKADEKLRCIPVVVLTSSREEKDVVESYRLGVNAYVVKPVNFNEFITAVKEIGAFWAIVNEPPPVQHRGG IR
Sequences:
>Translated_162_residues MAAETKERLGTFKLKRILLVEDNANDAELTMEALAEHNLANEVDIVRDGAEALDYLQQKGKYADSEAGNLAVILLDLKLP KVDGLEVLSVIKADEKLRCIPVVVLTSSREEKDVVESYRLGVNAYVVKPVNFNEFITAVKEIGAFWAIVNEPPPVQHRGG IR >Mature_161_residues AAETKERLGTFKLKRILLVEDNANDAELTMEALAEHNLANEVDIVRDGAEALDYLQQKGKYADSEAGNLAVILLDLKLPK VDGLEVLSVIKADEKLRCIPVVVLTSSREEKDVVESYRLGVNAYVVKPVNFNEFITAVKEIGAFWAIVNEPPPVQHRGGI R
Specific function: Forms a two-component system with cph1 in which it acts as receiver substrate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI87082012, Length=125, Percent_Identity=33.6, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1788191, Length=114, Percent_Identity=29.8245614035088, Blast_Score=61, Evalue=3e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001789 [H]
Pfam domain/function: PF00072 Response_reg [H]
EC number: NA
Molecular weight: Translated: 17928; Mature: 17797
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAETKERLGTFKLKRILLVEDNANDAELTMEALAEHNLANEVDIVRDGAEALDYLQQKG CCCCCHHHHHHEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCC KYADSEAGNLAVILLDLKLPKVDGLEVLSVIKADEKLRCIPVVVLTSSREEKDVVESYRL CCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHC GVNAYVVKPVNFNEFITAVKEIGAFWAIVNEPPPVQHRGGIR CCEEEEEECCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCC >Mature Secondary Structure AAETKERLGTFKLKRILLVEDNANDAELTMEALAEHNLANEVDIVRDGAEALDYLQQKG CCCCHHHHHHEEEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHCC KYADSEAGNLAVILLDLKLPKVDGLEVLSVIKADEKLRCIPVVVLTSSREEKDVVESYRL CCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHC GVNAYVVKPVNFNEFITAVKEIGAFWAIVNEPPPVQHRGGIR CCEEEEEECCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 9278513 [H]