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The map label for this gene is ynhG [H]

Identifier: 197117361

GI number: 197117361

Start: 1129693

End: 1130616

Strand: Direct

Name: ynhG [H]

Synonym: Gbem_0971

Alternate gene names: 197117361

Gene position: 1129693-1130616 (Clockwise)

Preceding gene: 308535204

Following gene: 197117363

Centisome position: 24.48

GC content: 52.6

Gene sequence:

>924_bases
ATGGCCACCTCTCCATCGCGTCATGGTTTCACTCCTTCTCTCGGTTTCGCATCAATACCTTTATCTATAATCCTCTTTCT
AATAGCTGCGGCATTACCTTCCTTGGCCTCCGCTGCCACATTCCAGAAGGCGGAGGGCATCATTGGCGCCATCCAGCAGT
ACATCATTGGCAAAGACGAGTCCCTGGTAGAAGTAGCGCGACGATTTGATGTCGGCTACTACTCGATCATCAACGCCAAT
CTTGGCATCGACCCGTTCGTTCCCAAACCGGGAACTATTGTCACCATTCCGACTGAATGGATTGTGCCGCGTGTCCAGAG
TGATCCTGACATAGTTGTCAATTTAGCGGAGTACCGCCTGTATCTTTTCCCACAGGGAAAATTTGGCGCCGTTTTTACCT
TCCCGCTAGGCATTGGGGACGAAGGTGCTGAAACCCCCTTGGGCACTTACACAGTTATCCAAAAAATAACCAGTCCCTCC
TGGCATGTTCCAGACTCAATACGACATGAGGTACCAGGATTGCCGTCAATCGTGCCGCCGGGGCCCAGCAACCCACTGGG
CACACATGCGCTACGCCTCTCCCGGGCAAATATCCTCATTCACGGCACTAATAGACCGTGGGGGATTGGCCGCAGGTCAA
GCCACGGTTGCCTTCGCCTCTATCCTGAAGACATAGCAACCCTATTCGAACTGGCGCACATTGGTATGAGTGTCGTAGTG
GTGTACCAGCCGTTTAAGATCTGTGTACGTGACGGTAAGGTCCTGATCGAAGTACATCGCTGCCGGGAAAATGAACCGAC
TGTAGGCCAGGCGCTGAAGCGACTCTATGATGAGGGGCTGCTGGCAAAAACAGATTTTTCGAAGTTGGTGCGTGCCATGC
TGGAAAAAAAAGGCGTGCCGGTGGAGGTAAGTCTGGCACAGTAA

Upstream 100 bases:

>100_bases
AGCGCACAAAGGGCTGAAGCTGCCGCTGCTGCGGCCGAACAGTCTGCGCAGCGGGCCCAGAAGATCTTTGAACTGAACCA
GAAGAAGTAACTCTATTGCC

Downstream 100 bases:

>100_bases
CTCTCATCCTACCGGCACGTCCGGCTGCTTCAACTCACTTCTTCTTTCGCAAAGGGCTATCTTTCCAAAAAATTCCCAGC
ACAGTCTGTTCGTCGGCAGT

Product: peptidoglycan L,D-transpeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MATSPSRHGFTPSLGFASIPLSIILFLIAAALPSLASAATFQKAEGIIGAIQQYIIGKDESLVEVARRFDVGYYSIINAN
LGIDPFVPKPGTIVTIPTEWIVPRVQSDPDIVVNLAEYRLYLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSPS
WHVPDSIRHEVPGLPSIVPPGPSNPLGTHALRLSRANILIHGTNRPWGIGRRSSHGCLRLYPEDIATLFELAHIGMSVVV
VYQPFKICVRDGKVLIEVHRCRENEPTVGQALKRLYDEGLLAKTDFSKLVRAMLEKKGVPVEVSLAQ

Sequences:

>Translated_307_residues
MATSPSRHGFTPSLGFASIPLSIILFLIAAALPSLASAATFQKAEGIIGAIQQYIIGKDESLVEVARRFDVGYYSIINAN
LGIDPFVPKPGTIVTIPTEWIVPRVQSDPDIVVNLAEYRLYLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSPS
WHVPDSIRHEVPGLPSIVPPGPSNPLGTHALRLSRANILIHGTNRPWGIGRRSSHGCLRLYPEDIATLFELAHIGMSVVV
VYQPFKICVRDGKVLIEVHRCRENEPTVGQALKRLYDEGLLAKTDFSKLVRAMLEKKGVPVEVSLAQ
>Mature_306_residues
ATSPSRHGFTPSLGFASIPLSIILFLIAAALPSLASAATFQKAEGIIGAIQQYIIGKDESLVEVARRFDVGYYSIINANL
GIDPFVPKPGTIVTIPTEWIVPRVQSDPDIVVNLAEYRLYLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSPSW
HVPDSIRHEVPGLPSIVPPGPSNPLGTHALRLSRANILIHGTNRPWGIGRRSSHGCLRLYPEDIATLFELAHIGMSVVVV
YQPFKICVRDGKVLIEVHRCRENEPTVGQALKRLYDEGLLAKTDFSKLVRAMLEKKGVPVEVSLAQ

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=272, Percent_Identity=39.7058823529412, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1787356, Length=280, Percent_Identity=35, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI1787040, Length=238, Percent_Identity=38.655462184874, Blast_Score=141, Evalue=5e-35,
Organism=Escherichia coli, GI1788299, Length=261, Percent_Identity=34.8659003831418, Blast_Score=131, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 33466; Mature: 33335

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATSPSRHGFTPSLGFASIPLSIILFLIAAALPSLASAATFQKAEGIIGAIQQYIIGKDE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SLVEVARRFDVGYYSIINANLGIDPFVPKPGTIVTIPTEWIVPRVQSDPDIVVNLAEYRL
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEEHEEE
YLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSPSWHVPDSIRHEVPGLPSIVPP
EEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
GPSNPLGTHALRLSRANILIHGTNRPWGIGRRSSHGCLRLYPEDIATLFELAHIGMSVVV
CCCCCCCHHHEEEEECEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCEEEE
VYQPFKICVRDGKVLIEVHRCRENEPTVGQALKRLYDEGLLAKTDFSKLVRAMLEKKGVP
EECCCEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
VEVSLAQ
EEEEECC
>Mature Secondary Structure 
ATSPSRHGFTPSLGFASIPLSIILFLIAAALPSLASAATFQKAEGIIGAIQQYIIGKDE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
SLVEVARRFDVGYYSIINANLGIDPFVPKPGTIVTIPTEWIVPRVQSDPDIVVNLAEYRL
HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEECHHHCCCCCCCCCCEEEEEEHEEE
YLFPQGKFGAVFTFPLGIGDEGAETPLGTYTVIQKITSPSWHVPDSIRHEVPGLPSIVPP
EEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
GPSNPLGTHALRLSRANILIHGTNRPWGIGRRSSHGCLRLYPEDIATLFELAHIGMSVVV
CCCCCCCHHHEEEEECEEEEEECCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCEEEE
VYQPFKICVRDGKVLIEVHRCRENEPTVGQALKRLYDEGLLAKTDFSKLVRAMLEKKGVP
EECCCEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
VEVSLAQ
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]