Click here to switch to the map view.

The map label for this gene is ymdB [H]

Identifier: 197117359

GI number: 197117359

Start: 1121099

End: 1121887

Strand: Direct

Name: ymdB [H]

Synonym: Gbem_0969

Alternate gene names: 197117359

Gene position: 1121099-1121887 (Clockwise)

Preceding gene: 197117358

Following gene: 197117360

Centisome position: 24.29

GC content: 59.95

Gene sequence:

>789_bases
ATGCCCGTTAAGCTTCTCTTTATCGGTGACGTCATCGGGAAGCCGGGGCGCGAGGCCCTCTCCCGTGAGTTGCACCGGAT
CGTAGACCGCCACATGGTCGACCTGGTCATTGCCAACGGCGAGAACGCGGCAGGCGGGTTCGGGCTGACCGAGGAAACCG
CTCAGGACATGTTCAAGTGCGGCGTCCAGATGATCACCTCCGGAAACCACATCTGGGACAAGAAGGACGCGCTCGAGTAC
ATCAAGAGGGAAGAGCGGATCGTGCGCCCCGCGAACTATCCGGAGGGGACCCCCGGCCGTGGTACTACCATAGTCAAGAC
CCCGGGCGGAGTGAAGGTCGGCATCCTGAATCTGGAAGGTCGCGTTTTCATGAACAACCTCGACTGTCCCTTCCGCTGTG
CCGATCGCGAGATAGCGAAGCTGAAGGAAGAGACGCCGGTCATCCTGGTGGATTTTCACGCCGAGGCGACCAGCGAGAAG
GTTTCCCTTGGCTGGTACCTCGACGGTCGCGTCTCAGCCGTCATCGGCACCCACACCCATGTGCAGACCGCGGACGAGCG
CATCCTTACCGCCGGAACCGCCTACATGACCGACGCCGGCATGACTGGTGCGTTCGATTCGGTAATCGGCGTGAAAAAGG
AAGAGGCCATCCTGAAATTCGTGAGCCAGCGTCCGTCGAAATTCGAGGTGGCGAAAAAGGATATACGCATCAACGCGGTC
GCCATCGAAGTAGACGAGATGACCGGCTTGGCCTTGGGTATCGAGAGAATCAACATCGCCTGCGGGTAG

Upstream 100 bases:

>100_bases
CTGGTCTTGGCCAAGGACATCGCCAAGAAAATCGAGACCGAGATGACCTACCCGGGACAGATCAAGGTGAACGTGATCAG
GGAAACCAGGGCCACCGAAT

Downstream 100 bases:

>100_bases
ATGCATCAATCCCTCTCTTGAATACGCGGCTGACGCGTCCCGTCGCCCGGCGGGAGAGGGACAGGGTGAGGGCATTTTTG
AAATAAATCTGGAGGGAAAG

Product: 2',3'-cyclic nucleotide 2'-phosphodiesterase YmdB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MPVKLLFIGDVIGKPGREALSRELHRIVDRHMVDLVIANGENAAGGFGLTEETAQDMFKCGVQMITSGNHIWDKKDALEY
IKREERIVRPANYPEGTPGRGTTIVKTPGGVKVGILNLEGRVFMNNLDCPFRCADREIAKLKEETPVILVDFHAEATSEK
VSLGWYLDGRVSAVIGTHTHVQTADERILTAGTAYMTDAGMTGAFDSVIGVKKEEAILKFVSQRPSKFEVAKKDIRINAV
AIEVDEMTGLALGIERINIACG

Sequences:

>Translated_262_residues
MPVKLLFIGDVIGKPGREALSRELHRIVDRHMVDLVIANGENAAGGFGLTEETAQDMFKCGVQMITSGNHIWDKKDALEY
IKREERIVRPANYPEGTPGRGTTIVKTPGGVKVGILNLEGRVFMNNLDCPFRCADREIAKLKEETPVILVDFHAEATSEK
VSLGWYLDGRVSAVIGTHTHVQTADERILTAGTAYMTDAGMTGAFDSVIGVKKEEAILKFVSQRPSKFEVAKKDIRINAV
AIEVDEMTGLALGIERINIACG
>Mature_261_residues
PVKLLFIGDVIGKPGREALSRELHRIVDRHMVDLVIANGENAAGGFGLTEETAQDMFKCGVQMITSGNHIWDKKDALEYI
KREERIVRPANYPEGTPGRGTTIVKTPGGVKVGILNLEGRVFMNNLDCPFRCADREIAKLKEETPVILVDFHAEATSEKV
SLGWYLDGRVSAVIGTHTHVQTADERILTAGTAYMTDAGMTGAFDSVIGVKKEEAILKFVSQRPSKFEVAKKDIRINAVA
IEVDEMTGLALGIERINIACG

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28651; Mature: 28520

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVKLLFIGDVIGKPGREALSRELHRIVDRHMVDLVIANGENAAGGFGLTEETAQDMFKC
CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHH
GVQMITSGNHIWDKKDALEYIKREERIVRPANYPEGTPGRGTTIVKTPGGVKVGILNLEG
HHHEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
RVFMNNLDCPFRCADREIAKLKEETPVILVDFHAEATSEKVSLGWYLDGRVSAVIGTHTH
EEEEECCCCCCEECCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCE
VQTADERILTAGTAYMTDAGMTGAFDSVIGVKKEEAILKFVSQRPSKFEVAKKDIRINAV
EECCCCEEEECCCCEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCCEEHHHCCEEEEEE
AIEVDEMTGLALGIERINIACG
EEEECHHCCEEEEEEEEEEECC
>Mature Secondary Structure 
PVKLLFIGDVIGKPGREALSRELHRIVDRHMVDLVIANGENAAGGFGLTEETAQDMFKC
CEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHH
GVQMITSGNHIWDKKDALEYIKREERIVRPANYPEGTPGRGTTIVKTPGGVKVGILNLEG
HHHEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCEEEEECCCCEEEEEEEECC
RVFMNNLDCPFRCADREIAKLKEETPVILVDFHAEATSEKVSLGWYLDGRVSAVIGTHTH
EEEEECCCCCCEECCHHHHHHHCCCCEEEEEECCCCCCCEEEEEEEECCEEEEEEECCCE
VQTADERILTAGTAYMTDAGMTGAFDSVIGVKKEEAILKFVSQRPSKFEVAKKDIRINAV
EECCCCEEEECCCCEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCCEEHHHCCEEEEEE
AIEVDEMTGLALGIERINIACG
EEEECHHCCEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]