| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116685
Identifier: 197116685
GI number: 197116685
Start: 344690
End: 345796
Strand: Reverse
Name: 197116685
Synonym: Gbem_0285
Alternate gene names: NA
Gene position: 345796-344690 (Counterclockwise)
Preceding gene: 197116690
Following gene: 197116673
Centisome position: 7.49
GC content: 63.32
Gene sequence:
>1107_bases ATGAGCAGCAAGGTGTTTTTCGCCGATATGCGGGCAGGGGCGCGCGAGAATTTGTTCGCGAAGATCGGTCGTCTCATGAA GGAAGCGGGAGTCGAGGACGCCGTGGCGCCGGGGGACCTGGTCGCCGTCAAGGTCCATTTCGGCGAAAGGGGGAACCACA CCTTCGTGCGCCCCATCTTCGTGCGCCGCGTGGTGGACGAGATCAAGGGTTGCCAGGGGAAGCCGTTTCTCACCGACTCC TCCACGCTCTATCCCGGCGAGCGCAAGGAGGCGGTTTCGGCCTTGACTTGTGCCATCGAGAACGGCTTCGCCTACGCCGT AGTGGGCGCGCCGCTCATCATGCTGGACGGCATCAAGGGGCATAACGCGAAAGACGTCCAGGTGGACGGCGAGATACTGA AGACGGTGAATATCGGCGCCGAGATCCTCGAAGCGGATTCGCTTGTCGCCGTCTCCCACTTCAAGTGCCACGAGCTGACC GGCTTCGGGGGAACGCTGAAGAACCTCGGCATGGGCTGTTCCAGCCGCACCGGCAAGATGCAGCAGCACTCGACCGTGGC GCCCAAGGTGGGGGAGCGGTTTTGCAACGGCTGCGAGGCCTGCCTGAAGTCGTGCGCCCACGCCGCCATCGCCATCATCG AGGGAAAGGCCCAGATCGATCCGGCGGCCTGCGTCGGCTGCAGCCGCTGCATTACCGCCTGCCAGAGAAAAGCGATCAAC ATCCAGTGGAACGAAAGCGCCTCGCTCGTGATGCGCAAGATGGCGGAGTACGCCAAAGGGGCGCTGCACGGCAAGAAGGG TAAGACCCTGTTCCTCAACTTCATCACCCAGGTCTCCCCCGCCTGCGATTGCTACGGCCACGCCGACGCCCCCATCGTCA ACGACATCGGGATCTGCGCCTCCGCAGACCCGGTAGCGCTGGACCAGGCCTGTGCCGACCTGGTCAACAATGCGCGGGGC AACCAGGACACCGCACTTGCCAGCGGGCACGAGCCCGGCGGCGACAAGTTCCGCGGCGTCCACCCCGAGATAGATTGGGA AGTGCAATTGGAGCACGCCGAGAAGATCGGCATGGGAAGCAGGAAGTACGAGTTGGTGAAGATCTAA
Upstream 100 bases:
>100_bases GACTGTTGAATTGGCGCCTAATATGTGATACCAATCGCAATCATTAAAACTTCGGGCAGCCGGCTGAGAATTTGCCGGGG ACTTAAGGAGGGGTTGAACG
Downstream 100 bases:
>100_bases AAGACCAGAGATAAAACAGATTAAGATTAAGATTGAGATCAAGACTAAAGGCCTTTGTCTGCCGCTTTCTCTTAATCTTA ATCTGTTTCACTCTTAATCT
Product: iron-sulfur cluster-binding oxidoreductase
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MSSKVFFADMRAGARENLFAKIGRLMKEAGVEDAVAPGDLVAVKVHFGERGNHTFVRPIFVRRVVDEIKGCQGKPFLTDS STLYPGERKEAVSALTCAIENGFAYAVVGAPLIMLDGIKGHNAKDVQVDGEILKTVNIGAEILEADSLVAVSHFKCHELT GFGGTLKNLGMGCSSRTGKMQQHSTVAPKVGERFCNGCEACLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQRKAIN IQWNESASLVMRKMAEYAKGALHGKKGKTLFLNFITQVSPACDCYGHADAPIVNDIGICASADPVALDQACADLVNNARG NQDTALASGHEPGGDKFRGVHPEIDWEVQLEHAEKIGMGSRKYELVKI
Sequences:
>Translated_368_residues MSSKVFFADMRAGARENLFAKIGRLMKEAGVEDAVAPGDLVAVKVHFGERGNHTFVRPIFVRRVVDEIKGCQGKPFLTDS STLYPGERKEAVSALTCAIENGFAYAVVGAPLIMLDGIKGHNAKDVQVDGEILKTVNIGAEILEADSLVAVSHFKCHELT GFGGTLKNLGMGCSSRTGKMQQHSTVAPKVGERFCNGCEACLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQRKAIN IQWNESASLVMRKMAEYAKGALHGKKGKTLFLNFITQVSPACDCYGHADAPIVNDIGICASADPVALDQACADLVNNARG NQDTALASGHEPGGDKFRGVHPEIDWEVQLEHAEKIGMGSRKYELVKI >Mature_367_residues SSKVFFADMRAGARENLFAKIGRLMKEAGVEDAVAPGDLVAVKVHFGERGNHTFVRPIFVRRVVDEIKGCQGKPFLTDSS TLYPGERKEAVSALTCAIENGFAYAVVGAPLIMLDGIKGHNAKDVQVDGEILKTVNIGAEILEADSLVAVSHFKCHELTG FGGTLKNLGMGCSSRTGKMQQHSTVAPKVGERFCNGCEACLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQRKAINI QWNESASLVMRKMAEYAKGALHGKKGKTLFLNFITQVSPACDCYGHADAPIVNDIGICASADPVALDQACADLVNNARGN QDTALASGHEPGGDKFRGVHPEIDWEVQLEHAEKIGMGSRKYELVKI
Specific function: Unknown
COG id: COG2768
COG function: function code R; Uncharacterized Fe-S center protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39289; Mature: 39157
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 4.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKVFFADMRAGARENLFAKIGRLMKEAGVEDAVAPGDLVAVKVHFGERGNHTFVRPIF CCCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH VRRVVDEIKGCQGKPFLTDSSTLYPGERKEAVSALTCAIENGFAYAVVGAPLIMLDGIKG HHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCC HNAKDVQVDGEILKTVNIGAEILEADSLVAVSHFKCHELTGFGGTLKNLGMGCSSRTGKM CCCCCEEECHHHHHHHHCCHHHHCCCCEEEEECCCHHCCCCCCCHHHHHCCCCCCCCCCC QQHSTVAPKVGERFCNGCEACLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQRKAIN HHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEE IQWNESASLVMRKMAEYAKGALHGKKGKTLFLNFITQVSPACDCYGHADAPIVNDIGICA EEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHCCCCCCCCCCCCCCCCC SADPVALDQACADLVNNARGNQDTALASGHEPGGDKFRGVHPEIDWEVQLEHAEKIGMGS CCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCC RKYELVKI CCEEEEEC >Mature Secondary Structure SSKVFFADMRAGARENLFAKIGRLMKEAGVEDAVAPGDLVAVKVHFGERGNHTFVRPIF CCCEEEHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHH VRRVVDEIKGCQGKPFLTDSSTLYPGERKEAVSALTCAIENGFAYAVVGAPLIMLDGIKG HHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEEEECCCC HNAKDVQVDGEILKTVNIGAEILEADSLVAVSHFKCHELTGFGGTLKNLGMGCSSRTGKM CCCCCEEECHHHHHHHHCCHHHHCCCCEEEEECCCHHCCCCCCCHHHHHCCCCCCCCCCC QQHSTVAPKVGERFCNGCEACLKSCAHAAIAIIEGKAQIDPAACVGCSRCITACQRKAIN HHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCEEE IQWNESASLVMRKMAEYAKGALHGKKGKTLFLNFITQVSPACDCYGHADAPIVNDIGICA EEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHCCCHHHCCCCCCCCCCCCCCCCC SADPVALDQACADLVNNARGNQDTALASGHEPGGDKFRGVHPEIDWEVQLEHAEKIGMGS CCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEECHHHHCCCCC RKYELVKI CCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA