Click here to switch to the map view.

The map label for this gene is selR [H]

Identifier: 197116663

GI number: 197116663

Start: 311747

End: 312289

Strand: Direct

Name: selR [H]

Synonym: Gbem_0263

Alternate gene names: 197116663

Gene position: 311747-312289 (Clockwise)

Preceding gene: 197116658

Following gene: 197116664

Centisome position: 6.75

GC content: 55.06

Gene sequence:

>543_bases
ATGAGGAAAGCAACATTTTTTGCAGGATTGCTGACAGTTTTAGTGGCGTCAGTTCTGGTTGTTCTTGAATCTGGTAAAGA
TTCGGCAATAGTTAACGCTGCTTCGCGGATCAAGGTCTTTTCAGCCGAGAAGGGGACCTATGTCATGAGCGACGAAATAG
TGAAAAGCAAAGATGAGTGGAAGAAAATACTGACTCCGGAACAGTACCATGTACTGAGGGAGAAGGGGACCGAGCGCGCT
TTCTCAGGTAAATACGCGACCAGCCATGAGCATGGCATCTACCGTTGCGCGGGATGCGGCCTCGACCTCTTCCGGTCCGA
GGACAAGTTCGAATCCGGTACCGGATGGCCCAGCTTTACCGCGCCGATAGCCAAGGAGAACGTCAAGACCGAGGTGGACC
GCAGCCTGTTCAGCACGCGCACCGAGATCCTTTGCCGCCGTTGCGGCGGACACCTGGGGCACGTCTTCAACGATGGGCCT
AAACCGACCGGGCTTCGCTACTGCATGAACTCGGCGGCGCTGCAGTTTGTGGCCACGAAGTAG

Upstream 100 bases:

>100_bases
GCTCCATCTCAGTGCAACTGTCATGAATAATTAACCCCATTGTGATATCCTAAGGGCTATGAGAAAAGGGGCAACGAAGA
GCCTATAGGAGAAAAAAGCC

Downstream 100 bases:

>100_bases
CTGCGGCTCCCCAGCCCACCTGCCGCGCCGGAAGGAATCCGATGCCGGGGGGGGGCAGGAGCTACGGCGGGGTCTGGCAG
AGGAGAAGAGTGATGAAACG

Product: peptide methionine sulfoxide reductase (R-isomer-specific)

Products: NA

Alternate protein names: Peptide-methionine (R)-S-oxide reductase [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRKATFFAGLLTVLVASVLVVLESGKDSAIVNAASRIKVFSAEKGTYVMSDEIVKSKDEWKKILTPEQYHVLREKGTERA
FSGKYATSHEHGIYRCAGCGLDLFRSEDKFESGTGWPSFTAPIAKENVKTEVDRSLFSTRTEILCRRCGGHLGHVFNDGP
KPTGLRYCMNSAALQFVATK

Sequences:

>Translated_180_residues
MRKATFFAGLLTVLVASVLVVLESGKDSAIVNAASRIKVFSAEKGTYVMSDEIVKSKDEWKKILTPEQYHVLREKGTERA
FSGKYATSHEHGIYRCAGCGLDLFRSEDKFESGTGWPSFTAPIAKENVKTEVDRSLFSTRTEILCRRCGGHLGHVFNDGP
KPTGLRYCMNSAALQFVATK
>Mature_180_residues
MRKATFFAGLLTVLVASVLVVLESGKDSAIVNAASRIKVFSAEKGTYVMSDEIVKSKDEWKKILTPEQYHVLREKGTERA
FSGKYATSHEHGIYRCAGCGLDLFRSEDKFESGTGWPSFTAPIAKENVKTEVDRSLFSTRTEILCRRCGGHLGHVFNDGP
KPTGLRYCMNSAALQFVATK

Specific function: Unknown

COG id: COG0229

COG function: function code O; Conserved domain frequently associated with peptide methionine sulfoxide reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the msrB Met sulfoxide reductase family [H]

Homologues:

Organism=Homo sapiens, GI301336164, Length=126, Percent_Identity=53.968253968254, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI301336162, Length=126, Percent_Identity=53.968253968254, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI73089054, Length=126, Percent_Identity=53.968253968254, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI37620216, Length=126, Percent_Identity=53.968253968254, Blast_Score=145, Evalue=2e-35,
Organism=Homo sapiens, GI117606353, Length=136, Percent_Identity=49.2647058823529, Blast_Score=137, Evalue=4e-33,
Organism=Homo sapiens, GI7706511, Length=99, Percent_Identity=39.3939393939394, Blast_Score=71, Evalue=5e-13,
Organism=Escherichia coli, GI1788077, Length=122, Percent_Identity=45.9016393442623, Blast_Score=120, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17553450, Length=120, Percent_Identity=48.3333333333333, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI115532676, Length=120, Percent_Identity=48.3333333333333, Blast_Score=117, Evalue=4e-27,
Organism=Saccharomyces cerevisiae, GI6319816, Length=135, Percent_Identity=44.4444444444444, Blast_Score=111, Evalue=8e-26,
Organism=Drosophila melanogaster, GI24645799, Length=129, Percent_Identity=49.6124031007752, Blast_Score=138, Evalue=2e-33,
Organism=Drosophila melanogaster, GI45553335, Length=129, Percent_Identity=49.6124031007752, Blast_Score=138, Evalue=2e-33,
Organism=Drosophila melanogaster, GI21356369, Length=129, Percent_Identity=49.6124031007752, Blast_Score=138, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24645801, Length=140, Percent_Identity=45.7142857142857, Blast_Score=133, Evalue=5e-32,
Organism=Drosophila melanogaster, GI24645804, Length=140, Percent_Identity=45.7142857142857, Blast_Score=133, Evalue=6e-32,
Organism=Drosophila melanogaster, GI221378664, Length=131, Percent_Identity=46.5648854961832, Blast_Score=132, Evalue=1e-31,
Organism=Drosophila melanogaster, GI221378662, Length=138, Percent_Identity=44.2028985507246, Blast_Score=131, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002579
- InterPro:   IPR011057 [H]

Pfam domain/function: PF01641 SelR [H]

EC number: =1.8.4.12 [H]

Molecular weight: Translated: 19903; Mature: 19903

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKATFFAGLLTVLVASVLVVLESGKDSAIVNAASRIKVFSAEKGTYVMSDEIVKSKDEW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCCEEECHHHHHCHHHH
KKILTPEQYHVLREKGTERAFSGKYATSHEHGIYRCAGCGLDLFRSEDKFESGTGWPSFT
HHHCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCC
APIAKENVKTEVDRSLFSTRTEILCRRCGGHLGHVFNDGPKPTGLRYCMNSAALQFVATK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHEEEECC
>Mature Secondary Structure
MRKATFFAGLLTVLVASVLVVLESGKDSAIVNAASRIKVFSAEKGTYVMSDEIVKSKDEW
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEEEECCCCCEEECHHHHHCHHHH
KKILTPEQYHVLREKGTERAFSGKYATSHEHGIYRCAGCGLDLFRSEDKFESGTGWPSFT
HHHCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCC
APIAKENVKTEVDRSLFSTRTEILCRRCGGHLGHVFNDGPKPTGLRYCMNSAALQFVATK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]