| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116656
Identifier: 197116656
GI number: 197116656
Start: 303016
End: 305304
Strand: Direct
Name: 197116656
Synonym: Gbem_0256
Alternate gene names: NA
Gene position: 303016-305304 (Clockwise)
Preceding gene: 197116655
Following gene: 197116658
Centisome position: 6.57
GC content: 57.54
Gene sequence:
>2289_bases ATGCCAGATCTACAGACAGTGATAAAGCAGTTGAGCCGCACCATCGTGGAGCACAAGAACGCGGCGCACATGTCCTTCGA GGAGTTTATGCAGCTCGCCACCGAGCAGCCGGAAAGGGTGATGCGCAACATCTTCCAGCTCTTCCACGACATGGTGAAGA ACTACGTCAGCGAGGGGACCGACGAGTATCCGGAGGATCCGGAATCAATCAACTTCGTCCCCTACGATACCCGGAAGCTC TTCGTGGAAAACTCGGACCGTCCCTTCTTCGCGGACCGCCTGTTCGCCAACCGCTTCATCAACCACGTGGCCGCCATGAA GAGCGGGGCACGCCAGAACAAGATCTACATCTTCGAGGGCCCCCCAGGCTCCGGCAAGAGCACCTTCTTGAACAACATCC TGATGAAGTTCGAGGAGTATGCGAGCACGGAGCAGGGCACCTGCCACGAGGTGGTGTGGCACCTGGACCGCCGCGTGCTG GGGAGCTTTAAGGAGCACCAGGTGAGCGCTTTCGTCGAGAAGCTCTCCCACCTCCTGGACGAGTACGAGCTGGAGTCGCA CGAGCATATCGACACCCGGGCCCTTCTGCGCGGCGGCGATGTGGTCGAGGTACCCTGCCCTTCGCACGACTCCCCGCTCT TGATGATCGACAAGGCGCAGCGCAGGGCGTTTTTCGACGACCTGTTCCAGAACGATTCTTTCAAGTGGAAACTCTTCACC GAGAAAGAGTACGATTGGGTCTTCCGCGATTCCCCCTGCACCATCTGCACCTCCATCTTCCAGGCGCTTTCGGCGAGGCT GGAGGACCCGGCCGATATCTTCAGCATGATCAAGGTTCGTCCCTACCGCTTCAACCGCAGGCTGGGTGAGGGGATCACCG TCTTCAACCCCGGCGACAAGTCGATGAAGCAGAACATCCTCACCAACGACATGCTGCAGAGAAAGATCGACCTCCTTTTG GGCGACAGCAACGAGGTGAAATACATCTTCTCCAACTTCGCCAAGACCAACAACGGCATCTACGCGCTCATGGACGTGAA GTCCCACAACGCGGAGCGCCTGCTGGAGCTGCACAACATCATCAGCGAGGGGATCCACAAGGTCGAGGACATCGAGGAGA ACGTGAGGAGCCTCTTCATCGCCCTGATGAACCCGGAAGACGAGCGGAGCATCGAGGGGGTGCAGTCATTCTCCGACCGC ATCGAGTTCATCAACATCCCTTATGTCATGGACTTGAACACCGAGGTGGAGATCTACCGCAACATCTTCGGCAAGCATAT CGACGGGAGCTTCCTCCCCCGGGTGCTGCACAACTTCGCGCGTGTCATCATCTCGACCCGGATGAACGTGAAGTCCGACG CCCTCCTGGAATGGATCGGTGACCCGGAGAAGTACAGGTTCTACTGCGACGAGAACCTGCAGATACTGAAAATGGAGATT TACACCGGGCACATCCCCGACTGGCTCACCGAAGAGGACAGAAAGAGGCTCAACGCCAAGCGGAGGAAGAAGATCATCGC CGAGAGCGAGCACGAGGGGGACCACGGCTTCTCCGGGCGTGAATCGATCAAGATCTTCTCCGACTTTTACGCCGCCTACG CCAGAAAAGACAAAATGATCACCATGAGCCACCTCTCCACCTTCTTCACCAGGTGGCACAAGGAGCTCAAGGAATCGATC CCCGATGGTTTCATGGAGTCGCTGGTGCACAACTACGATTACGTTGTGCTCCAGGAGGTGAAGGAGGCGCTCTACTACTA CAACGAGTCCCAGATCGAGCGCGACATCCTGCACTACATGTTCGCCGTCAACTTCGAGCCCGGCGCGGTCGAGGTCTGCC GCTTCACCGGAGAGAAGCTGGAGATAACCGAGGACTTCCTGGCCGGCATTGAAAGGCGGCTCATTGGGCCCAAGGCGGAG GACGAGGCGAGGCTGGCGTTCCGGCAGGAGACCCAGAGGGAGTACACCGGTCGCACCCTGACCCAAGAAATCATGGTCGA AGGTAAGCCCGCACAGGATACGACGCTGTTCCAGTCGCTGCACGACCGCTACGTATTCAACCTGAAGGAGAAGGTGCTGG AGCCTTTCCTGGAGAATGCCAACTTCCGGCGCGCCATCAAGGACTTCGATACCGAAGCTTTTAAGACCTACGACAAGAGG ATCCGGGACGACGTCACCTTCCTGATCAACAACCTCAGCTCAGAGAAGTTCAAGTACACCAAGCAGTTCGCCAAAGAAAT CTGCGTCTACGTGATAGACAACGACCTCGCCCGCAAGTTCCACGTTTAG
Upstream 100 bases:
>100_bases GGAGGGTGGTGAGGAAGCGGACATCACCTGGCAGCGCGTAGTCTATACCATGAACGAAAAAACCTTGAGCCGGCAGGTAC TGTGACAGGCGGATAAGCTC
Downstream 100 bases:
>100_bases AAGCAATTGACAATTGACGATTGACAATTGACAACTAAAACCTGGACATCAAAGAAAGGGGAATGACAGCCAACCTCCGG CAGCGGTCATTCCCCTTTGT
Product: ATPase AAA
Products: NA
Alternate protein names: Sensory Box Histidine Kinase/Response Regulator Protein; AAA Family ATPase; PrkA Protein; PrkA-Type Protein Kinase
Number of amino acids: Translated: 762; Mature: 761
Protein sequence:
>762_residues MPDLQTVIKQLSRTIVEHKNAAHMSFEEFMQLATEQPERVMRNIFQLFHDMVKNYVSEGTDEYPEDPESINFVPYDTRKL FVENSDRPFFADRLFANRFINHVAAMKSGARQNKIYIFEGPPGSGKSTFLNNILMKFEEYASTEQGTCHEVVWHLDRRVL GSFKEHQVSAFVEKLSHLLDEYELESHEHIDTRALLRGGDVVEVPCPSHDSPLLMIDKAQRRAFFDDLFQNDSFKWKLFT EKEYDWVFRDSPCTICTSIFQALSARLEDPADIFSMIKVRPYRFNRRLGEGITVFNPGDKSMKQNILTNDMLQRKIDLLL GDSNEVKYIFSNFAKTNNGIYALMDVKSHNAERLLELHNIISEGIHKVEDIEENVRSLFIALMNPEDERSIEGVQSFSDR IEFINIPYVMDLNTEVEIYRNIFGKHIDGSFLPRVLHNFARVIISTRMNVKSDALLEWIGDPEKYRFYCDENLQILKMEI YTGHIPDWLTEEDRKRLNAKRRKKIIAESEHEGDHGFSGRESIKIFSDFYAAYARKDKMITMSHLSTFFTRWHKELKESI PDGFMESLVHNYDYVVLQEVKEALYYYNESQIERDILHYMFAVNFEPGAVEVCRFTGEKLEITEDFLAGIERRLIGPKAE DEARLAFRQETQREYTGRTLTQEIMVEGKPAQDTTLFQSLHDRYVFNLKEKVLEPFLENANFRRAIKDFDTEAFKTYDKR IRDDVTFLINNLSSEKFKYTKQFAKEICVYVIDNDLARKFHV
Sequences:
>Translated_762_residues MPDLQTVIKQLSRTIVEHKNAAHMSFEEFMQLATEQPERVMRNIFQLFHDMVKNYVSEGTDEYPEDPESINFVPYDTRKL FVENSDRPFFADRLFANRFINHVAAMKSGARQNKIYIFEGPPGSGKSTFLNNILMKFEEYASTEQGTCHEVVWHLDRRVL GSFKEHQVSAFVEKLSHLLDEYELESHEHIDTRALLRGGDVVEVPCPSHDSPLLMIDKAQRRAFFDDLFQNDSFKWKLFT EKEYDWVFRDSPCTICTSIFQALSARLEDPADIFSMIKVRPYRFNRRLGEGITVFNPGDKSMKQNILTNDMLQRKIDLLL GDSNEVKYIFSNFAKTNNGIYALMDVKSHNAERLLELHNIISEGIHKVEDIEENVRSLFIALMNPEDERSIEGVQSFSDR IEFINIPYVMDLNTEVEIYRNIFGKHIDGSFLPRVLHNFARVIISTRMNVKSDALLEWIGDPEKYRFYCDENLQILKMEI YTGHIPDWLTEEDRKRLNAKRRKKIIAESEHEGDHGFSGRESIKIFSDFYAAYARKDKMITMSHLSTFFTRWHKELKESI PDGFMESLVHNYDYVVLQEVKEALYYYNESQIERDILHYMFAVNFEPGAVEVCRFTGEKLEITEDFLAGIERRLIGPKAE DEARLAFRQETQREYTGRTLTQEIMVEGKPAQDTTLFQSLHDRYVFNLKEKVLEPFLENANFRRAIKDFDTEAFKTYDKR IRDDVTFLINNLSSEKFKYTKQFAKEICVYVIDNDLARKFHV >Mature_761_residues PDLQTVIKQLSRTIVEHKNAAHMSFEEFMQLATEQPERVMRNIFQLFHDMVKNYVSEGTDEYPEDPESINFVPYDTRKLF VENSDRPFFADRLFANRFINHVAAMKSGARQNKIYIFEGPPGSGKSTFLNNILMKFEEYASTEQGTCHEVVWHLDRRVLG SFKEHQVSAFVEKLSHLLDEYELESHEHIDTRALLRGGDVVEVPCPSHDSPLLMIDKAQRRAFFDDLFQNDSFKWKLFTE KEYDWVFRDSPCTICTSIFQALSARLEDPADIFSMIKVRPYRFNRRLGEGITVFNPGDKSMKQNILTNDMLQRKIDLLLG DSNEVKYIFSNFAKTNNGIYALMDVKSHNAERLLELHNIISEGIHKVEDIEENVRSLFIALMNPEDERSIEGVQSFSDRI EFINIPYVMDLNTEVEIYRNIFGKHIDGSFLPRVLHNFARVIISTRMNVKSDALLEWIGDPEKYRFYCDENLQILKMEIY TGHIPDWLTEEDRKRLNAKRRKKIIAESEHEGDHGFSGRESIKIFSDFYAAYARKDKMITMSHLSTFFTRWHKELKESIP DGFMESLVHNYDYVVLQEVKEALYYYNESQIERDILHYMFAVNFEPGAVEVCRFTGEKLEITEDFLAGIERRLIGPKAED EARLAFRQETQREYTGRTLTQEIMVEGKPAQDTTLFQSLHDRYVFNLKEKVLEPFLENANFRRAIKDFDTEAFKTYDKRI RDDVTFLINNLSSEKFKYTKQFAKEICVYVIDNDLARKFHV
Specific function: Unknown
COG id: COG2766
COG function: function code T; Putative Ser protein kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89529; Mature: 89397
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDLQTVIKQLSRTIVEHKNAAHMSFEEFMQLATEQPERVMRNIFQLFHDMVKNYVSEGT CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC DEYPEDPESINFVPYDTRKLFVENSDRPFFADRLFANRFINHVAAMKSGARQNKIYIFEG CCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC PPGSGKSTFLNNILMKFEEYASTEQGTCHEVVWHLDRRVLGSFKEHQVSAFVEKLSHLLD CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH EYELESHEHIDTRALLRGGDVVEVPCPSHDSPLLMIDKAQRRAFFDDLFQNDSFKWKLFT HHHCCCCCCCCHHHHHCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEE EKEYDWVFRDSPCTICTSIFQALSARLEDPADIFSMIKVRPYRFNRRLGEGITVFNPGDK CCCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCEEEECCCCH SMKQNILTNDMLQRKIDLLLGDSNEVKYIFSNFAKTNNGIYALMDVKSHNAERLLELHNI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH ISEGIHKVEDIEENVRSLFIALMNPEDERSIEGVQSFSDRIEFINIPYVMDLNTEVEIYR HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCEEEECCCHHHHHH NIFGKHIDGSFLPRVLHNFARVIISTRMNVKSDALLEWIGDPEKYRFYCDENLQILKMEI HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEEEE YTGHIPDWLTEEDRKRLNAKRRKKIIAESEHEGDHGFSGRESIKIFSDFYAAYARKDKMI EECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE TMSHLSTFFTRWHKELKESIPDGFMESLVHNYDYVVLQEVKEALYYYNESQIERDILHYM HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH FAVNFEPGAVEVCRFTGEKLEITEDFLAGIERRLIGPKAEDEARLAFRQETQREYTGRTL HHCCCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH TQEIMVEGKPAQDTTLFQSLHDRYVFNLKEKVLEPFLENANFRRAIKDFDTEAFKTYDKR HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHH IRDDVTFLINNLSSEKFKYTKQFAKEICVYVIDNDLARKFHV HHHHHHHHHHHCCHHHHHHHHHHHHHHEEHEECCHHHHHCCC >Mature Secondary Structure PDLQTVIKQLSRTIVEHKNAAHMSFEEFMQLATEQPERVMRNIFQLFHDMVKNYVSEGT CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC DEYPEDPESINFVPYDTRKLFVENSDRPFFADRLFANRFINHVAAMKSGARQNKIYIFEG CCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC PPGSGKSTFLNNILMKFEEYASTEQGTCHEVVWHLDRRVLGSFKEHQVSAFVEKLSHLLD CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH EYELESHEHIDTRALLRGGDVVEVPCPSHDSPLLMIDKAQRRAFFDDLFQNDSFKWKLFT HHHCCCCCCCCHHHHHCCCCEEECCCCCCCCCEEEEEHHHHHHHHHHHHCCCCEEEEEEE EKEYDWVFRDSPCTICTSIFQALSARLEDPADIFSMIKVRPYRFNRRLGEGITVFNPGDK CCCCCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHCCCEEEECCCCH SMKQNILTNDMLQRKIDLLLGDSNEVKYIFSNFAKTNNGIYALMDVKSHNAERLLELHNI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHH ISEGIHKVEDIEENVRSLFIALMNPEDERSIEGVQSFSDRIEFINIPYVMDLNTEVEIYR HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEECCEEEECCCHHHHHH NIFGKHIDGSFLPRVLHNFARVIISTRMNVKSDALLEWIGDPEKYRFYCDENLQILKMEI HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEEEE YTGHIPDWLTEEDRKRLNAKRRKKIIAESEHEGDHGFSGRESIKIFSDFYAAYARKDKMI EECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEE TMSHLSTFFTRWHKELKESIPDGFMESLVHNYDYVVLQEVKEALYYYNESQIERDILHYM HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHH FAVNFEPGAVEVCRFTGEKLEITEDFLAGIERRLIGPKAEDEARLAFRQETQREYTGRTL HHCCCCCCHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHH TQEIMVEGKPAQDTTLFQSLHDRYVFNLKEKVLEPFLENANFRRAIKDFDTEAFKTYDKR HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHH IRDDVTFLINNLSSEKFKYTKQFAKEICVYVIDNDLARKFHV HHHHHHHHHHHCCHHHHHHHHHHHHHHEEHEECCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA