| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116630
Identifier: 197116630
GI number: 197116630
Start: 273186
End: 274121
Strand: Direct
Name: 197116630
Synonym: Gbem_0230
Alternate gene names: NA
Gene position: 273186-274121 (Clockwise)
Preceding gene: 308535152
Following gene: 197116631
Centisome position: 5.92
GC content: 51.28
Gene sequence:
>936_bases ATGGCAGTTCTTCGAAGGGTTGTTTCCTTCAGGAAATTTCCTGATCCAATCTTTCAGTACATAGCCGAGTTGGAAGACAT CTTCGTGGAACGACTCTGTCTTGATTCGTGTGGGATCGAAGAGTGCATCGGCAAGGACGCACACTATGGACCGGATGACT ATGACTTCGTCATGGTTCCGATGGCGAGCGATATTCGTTACTTCAGCGATAACGACCGAGTAATTCCTTGGGTTTTCGAC GTTTTCCCCAAAGACTTTGAGCAGTTCAGGCTGGATATAGCCAAGTTCAAAATTGTCTATCTGACCGACACGGCGGTCTG TCGCAGGCTGCAGTCCATGGGGTGCGGCCAGGTTCGCTTCATGCCCTTCTCCGTGTCCGATGCGCATGTCGCAGATGGAT GTCCGGTGAAGGATATTGATATCATTCACTATGGCCGCAGAGATACGGTTCTTGAAAGCTACACCGAGACGCTGTTGCGG CAAAATCCTCAGCTGCACTACGTCCGGACCGAGTACGACAGCAACAGGAACAGGCACTATTTTCATTCCAATTTTGGGGG GATGGTCGGGTCCAGTGATGTGCGTGACAACTTCTGGAAAGTACTGGAGAGATGCAAGGTAAGTTTGGTGTCAATGCCGG GATTTGACCATGGGAGGCGGGAAGGGCTTCTCACCGTACCGATACGTTACTTTGAGAGTGCGGCAAAGTTCTGTCACATG ATTAGCCGTCATCCCGACAGTGGAGATTTTCTATGGCTCGGGATCAGCGATATTGCTGAAAATGTAAGTAGCTATGAAGA GTTTGAACTTGTTACCATGCGTTGTCTGAACAACGCGCTCAGCCCGCAAAAAACCCGCAGCTATGACGAGTTCCTCGCCC ACCACGTTGCGAGCAGACGCGCAGACCAGGTCCGGGAGGATGTGGCGTCGCTTTGA
Upstream 100 bases:
>100_bases CGACAGCGGGCGCTTTTTGGGCGGGTTCACTATTGATAAATAATTAGGATTGTCATAAACTTTGGTCAAAGTTCAAGGCG CTTGAAAAACTGGAGTTATC
Downstream 100 bases:
>100_bases CCCTATTCGATATGGCAAATATCATTTTGCTTCGTTTTTCCGCAAAACAAGAAGAGGGGTAGTGGGGGGGAGACGGACTC GATGCTGAACATTTTTTCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MAVLRRVVSFRKFPDPIFQYIAELEDIFVERLCLDSCGIEECIGKDAHYGPDDYDFVMVPMASDIRYFSDNDRVIPWVFD VFPKDFEQFRLDIAKFKIVYLTDTAVCRRLQSMGCGQVRFMPFSVSDAHVADGCPVKDIDIIHYGRRDTVLESYTETLLR QNPQLHYVRTEYDSNRNRHYFHSNFGGMVGSSDVRDNFWKVLERCKVSLVSMPGFDHGRREGLLTVPIRYFESAAKFCHM ISRHPDSGDFLWLGISDIAENVSSYEEFELVTMRCLNNALSPQKTRSYDEFLAHHVASRRADQVREDVASL
Sequences:
>Translated_311_residues MAVLRRVVSFRKFPDPIFQYIAELEDIFVERLCLDSCGIEECIGKDAHYGPDDYDFVMVPMASDIRYFSDNDRVIPWVFD VFPKDFEQFRLDIAKFKIVYLTDTAVCRRLQSMGCGQVRFMPFSVSDAHVADGCPVKDIDIIHYGRRDTVLESYTETLLR QNPQLHYVRTEYDSNRNRHYFHSNFGGMVGSSDVRDNFWKVLERCKVSLVSMPGFDHGRREGLLTVPIRYFESAAKFCHM ISRHPDSGDFLWLGISDIAENVSSYEEFELVTMRCLNNALSPQKTRSYDEFLAHHVASRRADQVREDVASL >Mature_310_residues AVLRRVVSFRKFPDPIFQYIAELEDIFVERLCLDSCGIEECIGKDAHYGPDDYDFVMVPMASDIRYFSDNDRVIPWVFDV FPKDFEQFRLDIAKFKIVYLTDTAVCRRLQSMGCGQVRFMPFSVSDAHVADGCPVKDIDIIHYGRRDTVLESYTETLLRQ NPQLHYVRTEYDSNRNRHYFHSNFGGMVGSSDVRDNFWKVLERCKVSLVSMPGFDHGRREGLLTVPIRYFESAAKFCHMI SRHPDSGDFLWLGISDIAENVSSYEEFELVTMRCLNNALSPQKTRSYDEFLAHHVASRRADQVREDVASL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36097; Mature: 35966
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLRRVVSFRKFPDPIFQYIAELEDIFVERLCLDSCGIEECIGKDAHYGPDDYDFVMVP CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEE MASDIRYFSDNDRVIPWVFDVFPKDFEQFRLDIAKFKIVYLTDTAVCRRLQSMGCGQVRF CCCCCEEECCCCCEEHHHHHCCHHHHHHHHHHHHHEEEEEEECHHHHHHHHHCCCCCEEE MPFSVSDAHVADGCPVKDIDIIHYGRRDTVLESYTETLLRQNPQLHYVRTEYDSNRNRHY EEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE FHSNFGGMVGSSDVRDNFWKVLERCKVSLVSMPGFDHGRREGLLTVPIRYFESAAKFCHM EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH ISRHPDSGDFLWLGISDIAENVSSYEEFELVTMRCLNNALSPQKTRSYDEFLAHHVASRR HHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHH ADQVREDVASL HHHHHHHHHCC >Mature Secondary Structure AVLRRVVSFRKFPDPIFQYIAELEDIFVERLCLDSCGIEECIGKDAHYGPDDYDFVMVP HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEEEEE MASDIRYFSDNDRVIPWVFDVFPKDFEQFRLDIAKFKIVYLTDTAVCRRLQSMGCGQVRF CCCCCEEECCCCCEEHHHHHCCHHHHHHHHHHHHHEEEEEEECHHHHHHHHHCCCCCEEE MPFSVSDAHVADGCPVKDIDIIHYGRRDTVLESYTETLLRQNPQLHYVRTEYDSNRNRHY EEECCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEE FHSNFGGMVGSSDVRDNFWKVLERCKVSLVSMPGFDHGRREGLLTVPIRYFESAAKFCHM EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH ISRHPDSGDFLWLGISDIAENVSSYEEFELVTMRCLNNALSPQKTRSYDEFLAHHVASRR HHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHH ADQVREDVASL HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA