Click here to switch to the map view.

The map label for this gene is ubiD-1 [C]

Identifier: 197116631

GI number: 197116631

Start: 274997

End: 276343

Strand: Direct

Name: ubiD-1 [C]

Synonym: Gbem_0231

Alternate gene names: 197116631

Gene position: 274997-276343 (Clockwise)

Preceding gene: 197116630

Following gene: 197116632

Centisome position: 5.96

GC content: 65.85

Gene sequence:

>1347_bases
ATGGCATTTAAGGACTTGCGAGGTTTCATCGCCGGACTGGAAGCTGCCGGGGAACTCCAGAGGGTGGCTGCGGAGGTCGA
TCCCGACCTGGAAATCGCCTGTATCACCGACCGCCAGAGCAAGCTCCCCGGCGGCGGTAAGGCGCTTCTCTTCGAGAACG
TGAAAGGGAGTCCCTTTCCGGTTGCCACCAATCTCTTCGGTTCGCCGGCTCGCATGGCACTCGCACTGGGCGTTCCAAAG
CTGGACCGGCTCTCGGAGGCGATGGACGAACTGCTCCTTTGCCCGGGGCGGGCACCCCTCCCGCTGCTGTCCGATCGAGC
CCCCTGCCGGGAGGTCGTGGAGCGGGCCCCGAATCTGCTGCGCTACCCCTTCCTGAAGAGCTGGCCCGGCGACGGCGGGC
GCTTCATCACGCTCCCGCTGGTGTTCACCAGGGACCCGGAGACCGGCGCTGACAACTGCGGCATGTACCGGGTCCGGATC
TTCGGTGAGCGAAGTGCCGGGGTGCGATGGAAAAACGGCAGCGGCGGCTGGCAGCATCACCGGAAGTACCTCGCATCCGG
AGAGCGGATGCCGGTCGCGATCGCCATAGGCGCCGACCCGGCGCTGACGCTCGCCGCATCGCTCCCGCTCCCCGCCGGCC
TGGACGAGGTTTCCTTTGCCGGGTACCTGCGCGGCGAGCCGGTGCCGATGCTCCGCTGCCTCGATTCGGACCTCTTGGTT
CCTGCGGATGCCGAACTGGTAATCGAGGGGTTTGTCGAGCCGGGGGTGACCCGCAACGAAGGAGCTTTCGGCAACCACAC
CGGGAGCTACGACCCGGGCGAAGAGGTGCCGCTGCTGACGCTCACCTGCATCGCGCGCAGGCGCGACCCCATCTGCCAGG
CGACGGTGGTGGGCCCTCCTCCCATGGAGGACTGTTGGATGGCCAAGGCTGCCGAAAGGCTGCTGCTGCCGCTTATCCGC
AGGCAGTGCCCGGAGATCGTCGACCTGCTGCTGCCGCTGGAGGGAATCTTCCACGGCTGCGCCTTGATTGCAATAGAGAA
GAGCCTTCCCGGGCAGGGGCGGCGCGTGCTGGAGACGCTGCGCTCGGAGGGATGGTTGAAGCGGGGAAAACTTTTGGTGG
TGGTCGACGCCGCCGAAATGCCCCTCACGCTGTCGGAAGGTTTCTGGCGCGCGCTGAATGCGGTCAATTTTCCGCGCGAT
CTGGCGGTCACCCCCGACGGGTGCCTCGGGGTCGACGCGACGAGAAAGTTCCCGGAAGAGGGGGGCGGGCAGTACAAGGA
GTTGAAACAGGATGCATCGGTTAGTGCCCAGGTGCAGAAGAGATGGCGGGAGTACGGCTTTTTCTAG

Upstream 100 bases:

>100_bases
CCGCCGGTTCGGGCATGATCGCGAGAGATCGAGAAAAACGTTGTCATACCCCTGTGGAAGTGATAGAAACTTGCAGTTCA
GCTTATTTCCTGGAGTTGCC

Downstream 100 bases:

>100_bases
AGCGCGGGCGGAAAGGCAGGTATGAGTACCCAAGCAGGAGTCGAGATGACATTGTACGCCAGGACCAGAGTCTTCCTGGA
GATGATAAAGTTCAGCCACA

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 447

Protein sequence:

>448_residues
MAFKDLRGFIAGLEAAGELQRVAAEVDPDLEIACITDRQSKLPGGGKALLFENVKGSPFPVATNLFGSPARMALALGVPK
LDRLSEAMDELLLCPGRAPLPLLSDRAPCREVVERAPNLLRYPFLKSWPGDGGRFITLPLVFTRDPETGADNCGMYRVRI
FGERSAGVRWKNGSGGWQHHRKYLASGERMPVAIAIGADPALTLAASLPLPAGLDEVSFAGYLRGEPVPMLRCLDSDLLV
PADAELVIEGFVEPGVTRNEGAFGNHTGSYDPGEEVPLLTLTCIARRRDPICQATVVGPPPMEDCWMAKAAERLLLPLIR
RQCPEIVDLLLPLEGIFHGCALIAIEKSLPGQGRRVLETLRSEGWLKRGKLLVVVDAAEMPLTLSEGFWRALNAVNFPRD
LAVTPDGCLGVDATRKFPEEGGGQYKELKQDASVSAQVQKRWREYGFF

Sequences:

>Translated_448_residues
MAFKDLRGFIAGLEAAGELQRVAAEVDPDLEIACITDRQSKLPGGGKALLFENVKGSPFPVATNLFGSPARMALALGVPK
LDRLSEAMDELLLCPGRAPLPLLSDRAPCREVVERAPNLLRYPFLKSWPGDGGRFITLPLVFTRDPETGADNCGMYRVRI
FGERSAGVRWKNGSGGWQHHRKYLASGERMPVAIAIGADPALTLAASLPLPAGLDEVSFAGYLRGEPVPMLRCLDSDLLV
PADAELVIEGFVEPGVTRNEGAFGNHTGSYDPGEEVPLLTLTCIARRRDPICQATVVGPPPMEDCWMAKAAERLLLPLIR
RQCPEIVDLLLPLEGIFHGCALIAIEKSLPGQGRRVLETLRSEGWLKRGKLLVVVDAAEMPLTLSEGFWRALNAVNFPRD
LAVTPDGCLGVDATRKFPEEGGGQYKELKQDASVSAQVQKRWREYGFF
>Mature_447_residues
AFKDLRGFIAGLEAAGELQRVAAEVDPDLEIACITDRQSKLPGGGKALLFENVKGSPFPVATNLFGSPARMALALGVPKL
DRLSEAMDELLLCPGRAPLPLLSDRAPCREVVERAPNLLRYPFLKSWPGDGGRFITLPLVFTRDPETGADNCGMYRVRIF
GERSAGVRWKNGSGGWQHHRKYLASGERMPVAIAIGADPALTLAASLPLPAGLDEVSFAGYLRGEPVPMLRCLDSDLLVP
ADAELVIEGFVEPGVTRNEGAFGNHTGSYDPGEEVPLLTLTCIARRRDPICQATVVGPPPMEDCWMAKAAERLLLPLIRR
QCPEIVDLLLPLEGIFHGCALIAIEKSLPGQGRRVLETLRSEGWLKRGKLLVVVDAAEMPLTLSEGFWRALNAVNFPRDL
AVTPDGCLGVDATRKFPEEGGGQYKELKQDASVSAQVQKRWREYGFF

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=492, Percent_Identity=34.1463414634146, Blast_Score=268, Evalue=6e-73,
Organism=Saccharomyces cerevisiae, GI6320748, Length=315, Percent_Identity=28.8888888888889, Blast_Score=113, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR022390
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 48773; Mature: 48642

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKDLRGFIAGLEAAGELQRVAAEVDPDLEIACITDRQSKLPGGGKALLFENVKGSPFP
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCC
VATNLFGSPARMALALGVPKLDRLSEAMDELLLCPGRAPLPLLSDRAPCREVVERAPNLL
EECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHH
RYPFLKSWPGDGGRFITLPLVFTRDPETGADNCGMYRVRIFGERSAGVRWKNGSGGWQHH
CCCCHHCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCHHHH
RKYLASGERMPVAIAIGADPALTLAASLPLPAGLDEVSFAGYLRGEPVPMLRCLDSDLLV
HHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCC
PADAELVIEGFVEPGVTRNEGAFGNHTGSYDPGEEVPLLTLTCIARRRDPICQATVVGPP
CCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCC
PMEDCWMAKAAERLLLPLIRRQCPEIVDLLLPLEGIFHGCALIAIEKSLPGQGRRVLETL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHH
RSEGWLKRGKLLVVVDAAEMPLTLSEGFWRALNAVNFPRDLAVTPDGCLGVDATRKFPEE
HHCCCHHCCCEEEEEECCCCCEEHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHCCCCC
GGGQYKELKQDASVSAQVQKRWREYGFF
CCCHHHHHHHCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AFKDLRGFIAGLEAAGELQRVAAEVDPDLEIACITDRQSKLPGGGKALLFENVKGSPFP
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCC
VATNLFGSPARMALALGVPKLDRLSEAMDELLLCPGRAPLPLLSDRAPCREVVERAPNLL
EECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHH
RYPFLKSWPGDGGRFITLPLVFTRDPETGADNCGMYRVRIFGERSAGVRWKNGSGGWQHH
CCCCHHCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEECCCCCHHHH
RKYLASGERMPVAIAIGADPALTLAASLPLPAGLDEVSFAGYLRGEPVPMLRCLDSDLLV
HHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCHHHHHCCCCCCC
PADAELVIEGFVEPGVTRNEGAFGNHTGSYDPGEEVPLLTLTCIARRRDPICQATVVGPP
CCCHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCC
PMEDCWMAKAAERLLLPLIRRQCPEIVDLLLPLEGIFHGCALIAIEKSLPGQGRRVLETL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCHHHHHHH
RSEGWLKRGKLLVVVDAAEMPLTLSEGFWRALNAVNFPRDLAVTPDGCLGVDATRKFPEE
HHCCCHHCCCEEEEEECCCCCEEHHHHHHHHHHHCCCCCCEECCCCCCCCCCHHHCCCCC
GGGQYKELKQDASVSAQVQKRWREYGFF
CCCHHHHHHHCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]