| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116462
Identifier: 197116462
GI number: 197116462
Start: 73976
End: 74794
Strand: Reverse
Name: 197116462
Synonym: Gbem_0062
Alternate gene names: NA
Gene position: 74794-73976 (Counterclockwise)
Preceding gene: 197116463
Following gene: 197116461
Centisome position: 1.62
GC content: 41.27
Gene sequence:
>819_bases ATGAAAAAGATGTTTGCGTTAGTGGTTTGCCTTGCTGTGATTTTTCCAAATATTGTTATGGCAGCCTCAATCGAAAAGGC GGAAATGTACAGACAGAACGGGCTCACAGCAGAAGCGAAAAGGGAACTTATTGACATCATTTATACGAAAGAGGATAGGG CTAAGCCCGAAGCCTACTATCTGCTTGGAACTATAGCTTTCGGTGAAAGGAACATCTCATCTGCTCTGGACTTATGGAAA AAACTAATTGAAAAATATCCGAAATCATCACAAGCAGCACTTGTCAAGGACAGGGTAAAACAATTAGCAGAAATCACAGG AGAAGTTACGAAGGTAACGATAGAAAATGCTGTTGCACAATCATATTTACGGCACGCTGATTTCTGGTCTGAAAGGAAAA AGGAAATATTTGTTATCGATTCAAGTTGGATCCCACAGGTTGAAGCAGCAATAAAATGGTATGACAAGGTTATTCTGGAG TTCCCGAAATCCGAAGCGGCTAAGATTGCCTACGAAGGCAAACTAAAAACAATTATCGGCTGGGAAGAAACAGGTCGTTA TGGAGAGCAACATGGTTTAAAGGGAAACTTTTACAAATATATGCCAATGATGTTGTCAACATTCGCGGCCTTTGAGTCAG ATCACCCGGATGCGTCTACTCTACAATCATTTAGATATCAGATCGCCCAAGCCTACTGGAGCAATAGAGACTGGGAGAAG ACTAGAGAATGGTTGAAGCTAATGATGGAAAAATCGGGGCCAAATGACAGTTTTTATAAAGACTTAGCTTCCCGGCGGCT AGAGAAAGTGGAATATTAG
Upstream 100 bases:
>100_bases TCCTGTATAAGGAACTGAGGTAAGGTAGGTATACAGGCAACAAATTACCTGTATAGGGAACCGGCAACTTATATAGCATC ATCAAAAAAGGAGGAAAGAC
Downstream 100 bases:
>100_bases TTCGAGTTTCGCCCCCTAGCATCTTGTTCAACCATCGGCACGACCCCTCTCCCGCCCGCCGGTCGGGGGGTAGCCTCACT CCCGTTAAAGATGAAGGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MKKMFALVVCLAVIFPNIVMAASIEKAEMYRQNGLTAEAKRELIDIIYTKEDRAKPEAYYLLGTIAFGERNISSALDLWK KLIEKYPKSSQAALVKDRVKQLAEITGEVTKVTIENAVAQSYLRHADFWSERKKEIFVIDSSWIPQVEAAIKWYDKVILE FPKSEAAKIAYEGKLKTIIGWEETGRYGEQHGLKGNFYKYMPMMLSTFAAFESDHPDASTLQSFRYQIAQAYWSNRDWEK TREWLKLMMEKSGPNDSFYKDLASRRLEKVEY
Sequences:
>Translated_272_residues MKKMFALVVCLAVIFPNIVMAASIEKAEMYRQNGLTAEAKRELIDIIYTKEDRAKPEAYYLLGTIAFGERNISSALDLWK KLIEKYPKSSQAALVKDRVKQLAEITGEVTKVTIENAVAQSYLRHADFWSERKKEIFVIDSSWIPQVEAAIKWYDKVILE FPKSEAAKIAYEGKLKTIIGWEETGRYGEQHGLKGNFYKYMPMMLSTFAAFESDHPDASTLQSFRYQIAQAYWSNRDWEK TREWLKLMMEKSGPNDSFYKDLASRRLEKVEY >Mature_272_residues MKKMFALVVCLAVIFPNIVMAASIEKAEMYRQNGLTAEAKRELIDIIYTKEDRAKPEAYYLLGTIAFGERNISSALDLWK KLIEKYPKSSQAALVKDRVKQLAEITGEVTKVTIENAVAQSYLRHADFWSERKKEIFVIDSSWIPQVEAAIKWYDKVILE FPKSEAAKIAYEGKLKTIIGWEETGRYGEQHGLKGNFYKYMPMMLSTFAAFESDHPDASTLQSFRYQIAQAYWSNRDWEK TREWLKLMMEKSGPNDSFYKDLASRRLEKVEY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31582; Mature: 31582
Theoretical pI: Translated: 9.00; Mature: 9.00
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKMFALVVCLAVIFPNIVMAASIEKAEMYRQNGLTAEAKRELIDIIYTKEDRAKPEAYY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEE LLGTIAFGERNISSALDLWKKLIEKYPKSSQAALVKDRVKQLAEITGEVTKVTIENAVAQ EEEEHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYLRHADFWSERKKEIFVIDSSWIPQVEAAIKWYDKVILEFPKSEAAKIAYEGKLKTIIG HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEECCCEEEEEC WEETGRYGEQHGLKGNFYKYMPMMLSTFAAFESDHPDASTLQSFRYQIAQAYWSNRDWEK CHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH TREWLKLMMEKSGPNDSFYKDLASRRLEKVEY HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKKMFALVVCLAVIFPNIVMAASIEKAEMYRQNGLTAEAKRELIDIIYTKEDRAKPEAYY CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEE LLGTIAFGERNISSALDLWKKLIEKYPKSSQAALVKDRVKQLAEITGEVTKVTIENAVAQ EEEEHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SYLRHADFWSERKKEIFVIDSSWIPQVEAAIKWYDKVILEFPKSEAAKIAYEGKLKTIIG HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHEEECCCEEEEEC WEETGRYGEQHGLKGNFYKYMPMMLSTFAAFESDHPDASTLQSFRYQIAQAYWSNRDWEK CHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHH TREWLKLMMEKSGPNDSFYKDLASRRLEKVEY HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA