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The map label for this gene is 197106408

Identifier: 197106408

GI number: 197106408

Start: 3368601

End: 3368975

Strand: Direct

Name: 197106408

Synonym: PHZ_c2947

Alternate gene names: NA

Gene position: 3368601-3368975 (Clockwise)

Preceding gene: 197106406

Following gene: 197106409

Centisome position: 84.29

GC content: 68.8

Gene sequence:

>375_bases
ATGGACGAAATCGACCTTCACCTCGGCCGCAAGCTTCGGCGGCGGCGCAAGATGCTCGGCCTCACCCAGCAGGAGCTGGC
GGGGGCCTGCGGCGTCCGCTTCCAGCAGATCCAGAAGTACGAGTGCGCCGCCAACCGCATGTCGGCGGCCCGGCTGTGGA
AGCTGGCCGAGATCCTCGACGCGCCCGTCAGCTACTTCTACGAGGGCCTGTCCGAGGCCCAGCGGCAGGCCCACGAGGCG
TTCCGCGAGCCGGACGACGTCTTCACGCGCAAGGAGACCCGCGAACTCATCCAGGCCTACTACGCTCTGGACGAGCGCCC
GCGCCGGCAGCTGCTGGAGCTGGCCAAGGCGATGAACGGCGACGGCGAGGGTTAA

Upstream 100 bases:

>100_bases
TCTCGGCCATCGCCCCTCCTTAGTGGCGCCCGGTTTGCCGGGAAAGACCCGCGGCGTCCCGATCCGGGACGTCCGGGGGG
CAATGCGTAGGCGTCATCGC

Downstream 100 bases:

>100_bases
GTCCGGGCGCAAGGCGCGCTAAAGCGGGCGCATGCCGCTCTCCCCCGCCCGCCTCGCCGAATTCGACGCCTTCCTGCTGG
AGCTGAACCGCGCGGCGGGC

Product: transcriptional regulator, Cro/CI family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MDEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILDAPVSYFYEGLSEAQRQAHEA
FREPDDVFTRKETRELIQAYYALDERPRRQLLELAKAMNGDGEG

Sequences:

>Translated_124_residues
MDEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILDAPVSYFYEGLSEAQRQAHEA
FREPDDVFTRKETRELIQAYYALDERPRRQLLELAKAMNGDGEG
>Mature_124_residues
MDEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILDAPVSYFYEGLSEAQRQAHEA
FREPDDVFTRKETRELIQAYYALDERPRRQLLELAKAMNGDGEG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 14418; Mature: 14418

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILD
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APVSYFYEGLSEAQRQAHEAFREPDDVFTRKETRELIQAYYALDERPRRQLLELAKAMNG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
DGEG
CCCC
>Mature Secondary Structure
MDEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILD
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
APVSYFYEGLSEAQRQAHEAFREPDDVFTRKETRELIQAYYALDERPRRQLLELAKAMNG
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
DGEG
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]