| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is 197106358
Identifier: 197106358
GI number: 197106358
Start: 3310077
End: 3311114
Strand: Direct
Name: 197106358
Synonym: PHZ_c2897
Alternate gene names: NA
Gene position: 3310077-3311114 (Clockwise)
Preceding gene: 197106356
Following gene: 197106359
Centisome position: 82.83
GC content: 76.4
Gene sequence:
>1038_bases ATGCCCCGCCTGACGATCCTCTTGGCCGTCCTCGCCGCCGCTCTCAGCCTCGCCGGCGCCGCGGCGGCCCGGCCCTTGGT CGCCATCCTCGCCGACGCCCGCGGCACGGTGGCTACCGACCTGATGGCGCCCTATGCGATCCTCGCCGAGAGCGGCGCCG TCGACGTCCAGGTGGTCTCGGCCACGCGGGGGCCGGTGCGCCTCACGCCCGGCTACGCCTGGGTCCGGCCGCAGGCGAGC CTGGCCGACCTCGCGCGGCGGCCGCCCGACGTGATCATCGTCCCCGCTCTCGAGGTGGAGGACGATCCCGCCCGGGCCGC CTGGCTGCGGGACCAGCTCGCCCGCGGCGCCCGCATCATGTCCATCTGCAACGGCGCCCGGACGCTCGCCGCCGCCGGCC TGCTGGACGGGCGGCAGGCCACCGTCCACTGGTACAGCCGCAACGAGATGCGCAAGCGCCATCCGAAGGTCCGCTGGCGC GAGGACCGCCGCTGGGTCACCGACGGCCCGATCACCACCACCGCCGGGATCAGCGCGGGCGAGCCGGCCACCCTCCAGCT CCTGCGCGAACTGGCCGGCGAGGACGTCATGCGGGCCACGGCCGCGCGCCTGTCCCTGCCCCTGCCCGACTCGCGCCACG ACGGCGCCGCCTACCGGCTGACGCTCGGCGCCATGCGCCACGCCGCCTTCAACCGGCTGGCGTTCTGGACGCACGAGGAC GTGGCGGTGCCGCTGTCCCCCGGCTTCGACGAGATCGCCTTCGGCACAGCCATCGACGCCTGGTCCCGCACCTGGCGCTC GACGGCCTGGGCGAGCGGCGCCCCCGCCACCGTCTCGCGCCACGGCCTGGTGGTCTACCGGGCGCAGACCCCGCCGGGCC GCTTCGACCGCCGCGCGCCCCTCCCCCGCCCGGACGTGATGCTCAACACCTTCGCCCAGGTCCGCCGCGCCTACGGCGGG GCCACCGCCCGCTTCGTCGCCCTGCAGTTCGAGCACCCCGGTTTCCAACATCTCGGGGCCGCCGCCGGCCGCCGCTGA
Upstream 100 bases:
>100_bases CGAGGAATGGGTGAACGCCTGGCAGAAACCGTTGGAACCTTGTCATTCCAGACAGCACCCGCCCCGGCGCATCCTCTCCC CGAAAGGAAAGGAGCCTGCC
Downstream 100 bases:
>100_bases GCGGAGGACCCTGGAAGTGCTCGGGCCGGCCCGGCTAGGGTGCGGGCGACCTGAGGGAGGACGAGGCATGCTCAACCACG TGATGGTGGGATCGAACGAC
Product: transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator AraC Family; ThiJ/PfpI Domain-Containing Protein; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Transcriptional Activator FtrA; ADPA Family Transcriptional Regulator; ThiJ/PfpI Family Protein; AraC Family Regulatory Helix-Turn-Helix Protein; ThiJ/PfpI Domain Protein; DJ-1/PfpI Family; AraC Family Regulatory Protein; Transcriptional Regulator AraC Family Protein; A-Factor-Responsive Transcriptional Activator; Transcriptional Regulator Arac Family; Transcriptional Regulator SyrB; ThiJ/PfpI; Regulatory Protein; Transcription Regulator Protein; Transcriptional Regulator Protein AraC Family; Arac Family Transcriptional Regulator; Transcription Regulator; AraC Family Regulatory Helix-Turn-Helix; ThiJ/PfpI Family Transcriptional Regulator
Number of amino acids: Translated: 345; Mature: 344
Protein sequence:
>345_residues MPRLTILLAVLAAALSLAGAAAARPLVAILADARGTVATDLMAPYAILAESGAVDVQVVSATRGPVRLTPGYAWVRPQAS LADLARRPPDVIIVPALEVEDDPARAAWLRDQLARGARIMSICNGARTLAAAGLLDGRQATVHWYSRNEMRKRHPKVRWR EDRRWVTDGPITTTAGISAGEPATLQLLRELAGEDVMRATAARLSLPLPDSRHDGAAYRLTLGAMRHAAFNRLAFWTHED VAVPLSPGFDEIAFGTAIDAWSRTWRSTAWASGAPATVSRHGLVVYRAQTPPGRFDRRAPLPRPDVMLNTFAQVRRAYGG ATARFVALQFEHPGFQHLGAAAGRR
Sequences:
>Translated_345_residues MPRLTILLAVLAAALSLAGAAAARPLVAILADARGTVATDLMAPYAILAESGAVDVQVVSATRGPVRLTPGYAWVRPQAS LADLARRPPDVIIVPALEVEDDPARAAWLRDQLARGARIMSICNGARTLAAAGLLDGRQATVHWYSRNEMRKRHPKVRWR EDRRWVTDGPITTTAGISAGEPATLQLLRELAGEDVMRATAARLSLPLPDSRHDGAAYRLTLGAMRHAAFNRLAFWTHED VAVPLSPGFDEIAFGTAIDAWSRTWRSTAWASGAPATVSRHGLVVYRAQTPPGRFDRRAPLPRPDVMLNTFAQVRRAYGG ATARFVALQFEHPGFQHLGAAAGRR >Mature_344_residues PRLTILLAVLAAALSLAGAAAARPLVAILADARGTVATDLMAPYAILAESGAVDVQVVSATRGPVRLTPGYAWVRPQASL ADLARRPPDVIIVPALEVEDDPARAAWLRDQLARGARIMSICNGARTLAAAGLLDGRQATVHWYSRNEMRKRHPKVRWRE DRRWVTDGPITTTAGISAGEPATLQLLRELAGEDVMRATAARLSLPLPDSRHDGAAYRLTLGAMRHAAFNRLAFWTHEDV AVPLSPGFDEIAFGTAIDAWSRTWRSTAWASGAPATVSRHGLVVYRAQTPPGRFDRRAPLPRPDVMLNTFAQVRRAYGGA TARFVALQFEHPGFQHLGAAAGRR
Specific function: Unknown
COG id: COG0693
COG function: function code R; Putative intracellular protease/amidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37327; Mature: 37196
Theoretical pI: Translated: 11.48; Mature: 11.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRLTILLAVLAAALSLAGAAAARPLVAILADARGTVATDLMAPYAILAESGAVDVQVVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE ATRGPVRLTPGYAWVRPQASLADLARRPPDVIIVPALEVEDDPARAAWLRDQLARGARIM CCCCCEEECCCEEEECCCCHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHH SICNGARTLAAAGLLDGRQATVHWYSRNEMRKRHPKVRWREDRRWVTDGPITTTAGISAG HHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCCCCCEECCCCEECCCCEEEECCCCCC EPATLQLLRELAGEDVMRATAARLSLPLPDSRHDGAAYRLTLGAMRHAAFNRLAFWTHED CHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHEEEECCC VAVPLSPGFDEIAFGTAIDAWSRTWRSTAWASGAPATVSRHGLVVYRAQTPPGRFDRRAP EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCC LPRPDVMLNTFAQVRRAYGGATARFVALQFEHPGFQHLGAAAGRR CCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCC >Mature Secondary Structure PRLTILLAVLAAALSLAGAAAARPLVAILADARGTVATDLMAPYAILAESGAVDVQVVS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE ATRGPVRLTPGYAWVRPQASLADLARRPPDVIIVPALEVEDDPARAAWLRDQLARGARIM CCCCCEEECCCEEEECCCCHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCHHHH SICNGARTLAAAGLLDGRQATVHWYSRNEMRKRHPKVRWREDRRWVTDGPITTTAGISAG HHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHCCCCCEECCCCEECCCCEEEECCCCCC EPATLQLLRELAGEDVMRATAARLSLPLPDSRHDGAAYRLTLGAMRHAAFNRLAFWTHED CHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHEEEECCC VAVPLSPGFDEIAFGTAIDAWSRTWRSTAWASGAPATVSRHGLVVYRAQTPPGRFDRRAP EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCC LPRPDVMLNTFAQVRRAYGGATARFVALQFEHPGFQHLGAAAGRR CCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA