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The map label for this gene is ompW [C]

Identifier: 197106279

GI number: 197106279

Start: 3229904

End: 3230551

Strand: Direct

Name: ompW [C]

Synonym: PHZ_c2818

Alternate gene names: 197106279

Gene position: 3229904-3230551 (Clockwise)

Preceding gene: 197106277

Following gene: 197106280

Centisome position: 80.82

GC content: 67.44

Gene sequence:

>648_bases
ATGTACACCAAGACGATCGCGCTCGCCGTGGGCGCGGGTCTGCTGCTGGCCGGCGCGGCCCAGGCGCAGGACTTCCAGCC
CAAGACCGCGGGCACGCTCATGCTGAACACCCGCGCCACCGTGGTGGCCCCCGACGCGGGCGACCCGATCACCACCCTGG
CGGGCGCGGCCACCGGCCTGAAGGCCGAGGTGAGCGACGACGTCATGCCGACCATCGGCCTGACCTACTTCTTCACCGAC
AACGTCGCCGTCGAGGTGATCGCCGGCACGACCAAGCACACCATCCGCGCCAAGGGCGGGGCCACGGACGTGAAGGTGCA
GGAGACCTGGGTGCTGCCGCCGGTCGTGTCGCTGCAGTACCACTTCATGCCCGACCAGAAGGTCAGCCCCTACGTCGGCG
CGGGCCTGAACTACATGCTGTTCTACAGCGAGAAGGACTACAACGGCTTCGGCCTGAAGGTGGACGACGGCTTCGGCTAC
GCGCTGCAGGCCGGCGTCGACGTGGCCCTGCAGGGCAAGCTGAGCGCCAACCTGGACGTCAAGAAGGTGTTCTTCGAGAC
CGACGCCACCGACCGCTTCAACGGCGTGAAGTCCAAGGTGAACCTGGACCCGTGGGTCGTCTCGGCGGGCCTCGGCTACA
AGTTCTAA

Upstream 100 bases:

>100_bases
TCCGTGCTCATTGCGGCAGATCAAGGTCGCGCTTTGCTGCGCCTGCGAAACAGGCCGCCGTCGCGGACGCCAAGAGCCGC
CAACTCCTAAGGGGATAGAC

Downstream 100 bases:

>100_bases
GCCCCGATTCCAAGCCACGGGCTTCGAACGGCTTTTTCGGGGGCGGACGGCGACGTCCGCCCCTCTTGCGTTGACCGCCG
TCAACGCGCCCCGGCGCGGG

Product: outer membrane protein OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MYTKTIALAVGAGLLLAGAAQAQDFQPKTAGTLMLNTRATVVAPDAGDPITTLAGAATGLKAEVSDDVMPTIGLTYFFTD
NVAVEVIAGTTKHTIRAKGGATDVKVQETWVLPPVVSLQYHFMPDQKVSPYVGAGLNYMLFYSEKDYNGFGLKVDDGFGY
ALQAGVDVALQGKLSANLDVKKVFFETDATDRFNGVKSKVNLDPWVVSAGLGYKF

Sequences:

>Translated_215_residues
MYTKTIALAVGAGLLLAGAAQAQDFQPKTAGTLMLNTRATVVAPDAGDPITTLAGAATGLKAEVSDDVMPTIGLTYFFTD
NVAVEVIAGTTKHTIRAKGGATDVKVQETWVLPPVVSLQYHFMPDQKVSPYVGAGLNYMLFYSEKDYNGFGLKVDDGFGY
ALQAGVDVALQGKLSANLDVKKVFFETDATDRFNGVKSKVNLDPWVVSAGLGYKF
>Mature_215_residues
MYTKTIALAVGAGLLLAGAAQAQDFQPKTAGTLMLNTRATVVAPDAGDPITTLAGAATGLKAEVSDDVMPTIGLTYFFTD
NVAVEVIAGTTKHTIRAKGGATDVKVQETWVLPPVVSLQYHFMPDQKVSPYVGAGLNYMLFYSEKDYNGFGLKVDDGFGY
ALQAGVDVALQGKLSANLDVKKVFFETDATDRFNGVKSKVNLDPWVVSAGLGYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=214, Percent_Identity=30.3738317757009, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 22826; Mature: 22826

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYTKTIALAVGAGLLLAGAAQAQDFQPKTAGTLMLNTRATVVAPDAGDPITTLAGAATGL
CCCEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCEEEEECCCCCCHHHHHCCCCCC
KAEVSDDVMPTIGLTYFFTDNVAVEVIAGTTKHTIRAKGGATDVKVQETWVLPPVVSLQY
EEECCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCEEEEEE
HFMPDQKVSPYVGAGLNYMLFYSEKDYNGFGLKVDDGFGYALQAGVDVALQGKLSANLDV
EECCCCCCCCHHCCCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCEEEECCCCCCCEE
KKVFFETDATDRFNGVKSKVNLDPWVVSAGLGYKF
EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MYTKTIALAVGAGLLLAGAAQAQDFQPKTAGTLMLNTRATVVAPDAGDPITTLAGAATGL
CCCEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEECCEEEEECCCCCCHHHHHCCCCCC
KAEVSDDVMPTIGLTYFFTDNVAVEVIAGTTKHTIRAKGGATDVKVQETWVLPPVVSLQY
EEECCCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCEEEEEE
HFMPDQKVSPYVGAGLNYMLFYSEKDYNGFGLKVDDGFGYALQAGVDVALQGKLSANLDV
EECCCCCCCCHHCCCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCEEEECCCCCCCEE
KKVFFETDATDRFNGVKSKVNLDPWVVSAGLGYKF
EEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]