| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is cpnA [H]
Identifier: 197106277
GI number: 197106277
Start: 3228188
End: 3228955
Strand: Direct
Name: cpnA [H]
Synonym: PHZ_c2816
Alternate gene names: 197106277
Gene position: 3228188-3228955 (Clockwise)
Preceding gene: 197106266
Following gene: 197106279
Centisome position: 80.78
GC content: 70.31
Gene sequence:
>768_bases ATGGACCGCCTGAAGGACAAGGTCGCGATCGTCACCGGCGCAGCGCTCGGCATCGGCCGGGCGATCGCCATCCGCATGGC CGAGGAAGGCGCCTCGGTCGCCGTCACCGACATGCGCGAGGCCGAAGGCCAGGCGCTCGCCGACGAGCTGGCCGGCCGCG GCTTCAACGCCCGCTTCTGGCGCCTGGACGTCGCCCGCGAGGACGAGGTCCGGCGCGTGGTGGACGAGGCCGCCGCCCAC TTCGGCCGGCTGGACGTGCTGGTGAACAACGCCGGCGTGGCCGGGGCCAACAAGCCCACCCACGAGATCACCGAGGCCGA GTGGGACTTCGTTCAGGCGATCAACGTGAAGGGCGTATTCTTCTGCACCAAGCACGCGGTCGCGCACCTGCGGAAATCGG GCGGCGGCAGCATCGTCAACCTGTCGTCGATCTACGGCCTGGTGAGCGCCCCCGACGTGCCGCCCTACCACGCCTCGAAG GGGGCGGTGCGGCTGATGAGCAAGACCGACGCCCTGATCTACGCCCCCGACCGGATCCGGGTGAACTCGATCCACCCGGG CTTCATCTGGACGCCGATGGTCGAGGGCCACCTGAAGACCATGGGCGACGTGGAAGAGGGCAAGGCGGCCACCGCCGCCC TGCACCCGCTGGGCCACCTGGGCGAGCCCGACGACATCGCCTGGGGCTGCGTATACCTGGCCTCGGACGAGGCGAAGTTC GTCACCGGGACCGAGCTGGTCATCGACGGCGGCTACACCGCCCGCTGA
Upstream 100 bases:
>100_bases GAGCGCCCCCAGGTTGAGCGAACCCAAGTTGAGTAAACGCAAGGCGCGATGCGATCCCGGGCGCCATCCTGCGCGTTCAT CCAAGAGCGAGGGCCGCCCC
Downstream 100 bases:
>100_bases CTGGTCGCGCCGCCTGTTCGAGCCGCCTATTCAAGCTGCACGTCGCGGGCCGCTTCCCACGACTGCTGCTCCTCGTGCGC CCGGAGCCCCTTGCGGACGA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MDRLKDKVAIVTGAALGIGRAIAIRMAEEGASVAVTDMREAEGQALADELAGRGFNARFWRLDVAREDEVRRVVDEAAAH FGRLDVLVNNAGVAGANKPTHEITEAEWDFVQAINVKGVFFCTKHAVAHLRKSGGGSIVNLSSIYGLVSAPDVPPYHASK GAVRLMSKTDALIYAPDRIRVNSIHPGFIWTPMVEGHLKTMGDVEEGKAATAALHPLGHLGEPDDIAWGCVYLASDEAKF VTGTELVIDGGYTAR
Sequences:
>Translated_255_residues MDRLKDKVAIVTGAALGIGRAIAIRMAEEGASVAVTDMREAEGQALADELAGRGFNARFWRLDVAREDEVRRVVDEAAAH FGRLDVLVNNAGVAGANKPTHEITEAEWDFVQAINVKGVFFCTKHAVAHLRKSGGGSIVNLSSIYGLVSAPDVPPYHASK GAVRLMSKTDALIYAPDRIRVNSIHPGFIWTPMVEGHLKTMGDVEEGKAATAALHPLGHLGEPDDIAWGCVYLASDEAKF VTGTELVIDGGYTAR >Mature_255_residues MDRLKDKVAIVTGAALGIGRAIAIRMAEEGASVAVTDMREAEGQALADELAGRGFNARFWRLDVAREDEVRRVVDEAAAH FGRLDVLVNNAGVAGANKPTHEITEAEWDFVQAINVKGVFFCTKHAVAHLRKSGGGSIVNLSSIYGLVSAPDVPPYHASK GAVRLMSKTDALIYAPDRIRVNSIHPGFIWTPMVEGHLKTMGDVEEGKAATAALHPLGHLGEPDDIAWGCVYLASDEAKF VTGTELVIDGGYTAR
Specific function: Reduces cyclopentanol to cyclopentanone. The enzyme also shows considerable activity toward cyclohexanol [H]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=226, Percent_Identity=40.2654867256637, Blast_Score=145, Evalue=3e-35, Organism=Homo sapiens, GI15277342, Length=261, Percent_Identity=36.7816091954023, Blast_Score=142, Evalue=3e-34, Organism=Homo sapiens, GI32483357, Length=254, Percent_Identity=35.8267716535433, Blast_Score=137, Evalue=1e-32, Organism=Homo sapiens, GI66933014, Length=254, Percent_Identity=33.8582677165354, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=35.9683794466403, Blast_Score=113, Evalue=1e-25, Organism=Homo sapiens, GI31542939, Length=243, Percent_Identity=33.7448559670782, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=36.4130434782609, Blast_Score=103, Evalue=1e-22, Organism=Homo sapiens, GI126723750, Length=257, Percent_Identity=30.7392996108949, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI19923817, Length=258, Percent_Identity=30.2325581395349, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=255, Percent_Identity=29.4117647058824, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=31.8725099601594, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI4758504, Length=259, Percent_Identity=31.6602316602317, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=33.1578947368421, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI224922801, Length=161, Percent_Identity=37.2670807453416, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=28.968253968254, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI4504505, Length=196, Percent_Identity=32.6530612244898, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI209862901, Length=202, Percent_Identity=30.1980198019802, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI19923983, Length=202, Percent_Identity=30.1980198019802, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=40.3846153846154, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI109715829, Length=252, Percent_Identity=26.984126984127, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI83715985, Length=259, Percent_Identity=29.7297297297297, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI40254986, Length=152, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4503301, Length=252, Percent_Identity=25.7936507936508, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI87082100, Length=256, Percent_Identity=36.71875, Blast_Score=136, Evalue=1e-33, Organism=Escherichia coli, GI1789208, Length=255, Percent_Identity=32.9411764705882, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=33.0645161290323, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=34.6774193548387, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=29.8387096774194, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=5e-27, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.9317269076305, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=28.5714285714286, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1789378, Length=242, Percent_Identity=34.7107438016529, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=31.3253012048193, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=29.7959183673469, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=29.6703296703297, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI2367365, Length=261, Percent_Identity=29.8850574712644, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17561402, Length=261, Percent_Identity=34.8659003831418, Blast_Score=134, Evalue=3e-32, Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=35.4477611940299, Blast_Score=127, Evalue=7e-30, Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=32.5396825396825, Blast_Score=123, Evalue=7e-29, Organism=Caenorhabditis elegans, GI17555706, Length=249, Percent_Identity=34.136546184739, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=33.4661354581673, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=33.201581027668, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=32.3420074349442, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=33.0827067669173, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17562906, Length=268, Percent_Identity=32.4626865671642, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=32.089552238806, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI193204405, Length=269, Percent_Identity=31.9702602230483, Blast_Score=104, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=32.5925925925926, Blast_Score=103, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=29.368029739777, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI71994600, Length=259, Percent_Identity=30.5019305019305, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=32.9545454545455, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=33.7078651685393, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=31.9548872180451, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562990, Length=270, Percent_Identity=31.4814814814815, Blast_Score=100, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=30.188679245283, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=29.9242424242424, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17560150, Length=268, Percent_Identity=30.9701492537313, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=32.5581395348837, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=31.2252964426877, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=29.9625468164794, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17563726, Length=268, Percent_Identity=30.5970149253731, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=28.030303030303, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=30.2788844621514, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17555612, Length=215, Percent_Identity=34.4186046511628, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=28.8537549407115, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17508651, Length=255, Percent_Identity=29.8039215686275, Blast_Score=88, Evalue=3e-18, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=27.5510204081633, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=27.6923076923077, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI86565303, Length=216, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561272, Length=251, Percent_Identity=30.6772908366534, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17568967, Length=196, Percent_Identity=32.1428571428571, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=25.9067357512953, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71997099, Length=206, Percent_Identity=29.6116504854369, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI32563809, Length=201, Percent_Identity=27.8606965174129, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI71982365, Length=143, Percent_Identity=29.3706293706294, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17507613, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17567345, Length=196, Percent_Identity=26.0204081632653, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI115534660, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=25, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=30.8080808080808, Blast_Score=76, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=255, Percent_Identity=30.9803921568627, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323882, Length=251, Percent_Identity=27.4900398406374, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=37.7952755905512, Blast_Score=134, Evalue=4e-32, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=33.7254901960784, Blast_Score=134, Evalue=4e-32, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=36.8217054263566, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI21357041, Length=259, Percent_Identity=35.5212355212355, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=35.2, Blast_Score=121, Evalue=4e-28, Organism=Drosophila melanogaster, GI24643142, Length=251, Percent_Identity=33.8645418326693, Blast_Score=106, Evalue=1e-23, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=33.4661354581673, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=34.9019607843137, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=31.2741312741313, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI281364494, Length=232, Percent_Identity=31.4655172413793, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI281364892, Length=188, Percent_Identity=30.8510638297872, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24640492, Length=164, Percent_Identity=29.8780487804878, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641232, Length=212, Percent_Identity=31.1320754716981, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=233, Percent_Identity=28.755364806867, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21357673, Length=149, Percent_Identity=31.5436241610738, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=28.4313725490196, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24581726, Length=201, Percent_Identity=26.3681592039801, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571387, Length=238, Percent_Identity=28.9915966386555, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24648944, Length=235, Percent_Identity=28.936170212766, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24665243, Length=195, Percent_Identity=26.1538461538462, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI221331218, Length=195, Percent_Identity=26.1538461538462, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI21358495, Length=216, Percent_Identity=25, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=31.8181818181818, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=208, Percent_Identity=32.2115384615385, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356301, Length=168, Percent_Identity=29.7619047619048, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.163 [H]
Molecular weight: Translated: 27270; Mature: 27270
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRLKDKVAIVTGAALGIGRAIAIRMAEEGASVAVTDMREAEGQALADELAGRGFNARFW CCCHHCEEEEEEEHHHHCCEEEEEEEECCCCEEEEECCHHHCCHHHHHHHHCCCCCCEEE RLDVAREDEVRRVVDEAAAHFGRLDVLVNNAGVAGANKPTHEITEAEWDFVQAINVKGVF EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEECCCEEE FCTKHAVAHLRKSGGGSIVNLSSIYGLVSAPDVPPYHASKGAVRLMSKTDALIYAPDRIR EEHHHHHHHHHHCCCCCEEEHHHHHHEEECCCCCCCCCCCCEEEEEECCCEEEECCCEEE VNSIHPGFIWTPMVEGHLKTMGDVEEGKAATAALHPLGHLGEPDDIAWGCVYLASDEAKF EEEECCCEEECCCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEE VTGTELVIDGGYTAR EECCEEEEECCCCCC >Mature Secondary Structure MDRLKDKVAIVTGAALGIGRAIAIRMAEEGASVAVTDMREAEGQALADELAGRGFNARFW CCCHHCEEEEEEEHHHHCCEEEEEEEECCCCEEEEECCHHHCCHHHHHHHHCCCCCCEEE RLDVAREDEVRRVVDEAAAHFGRLDVLVNNAGVAGANKPTHEITEAEWDFVQAINVKGVF EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHCCCCCCEEEEECCCEEE FCTKHAVAHLRKSGGGSIVNLSSIYGLVSAPDVPPYHASKGAVRLMSKTDALIYAPDRIR EEHHHHHHHHHHCCCCCEEEHHHHHHEEECCCCCCCCCCCCEEEEEECCCEEEECCCEEE VNSIHPGFIWTPMVEGHLKTMGDVEEGKAATAALHPLGHLGEPDDIAWGCVYLASDEAKF EEEECCCEEECCCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCEE VTGTELVIDGGYTAR EECCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12406764 [H]