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The map label for this gene is yfdE [H]

Identifier: 197105995

GI number: 197105995

Start: 2908832

End: 2910004

Strand: Reverse

Name: yfdE [H]

Synonym: PHZ_c2534

Alternate gene names: 197105995

Gene position: 2910004-2908832 (Counterclockwise)

Preceding gene: 197105996

Following gene: 197105992

Centisome position: 72.82

GC content: 71.36

Gene sequence:

>1173_bases
GTGGGCATGCCGCTGGAAGGCGTCCGGGTCCTGGACCTGACGCGGGTGATCGCCGGGCCGCTCTGCACCCAGATGCTGGC
GGAGTTGGGCGCCGACGTCGTGAAGGTCGAGAACCCCGAAGGCGGCGACGAGATGCGGGTGATCGGCCGCAACAAGCTGC
TGCGGGACGGCGTCCCGGTGGAGGGGCAGACCACCGACTTCATCTCGGCCAATCGCGGCAAGCGGTCGGTGACGCTCGAC
CTGCGAACCGCTGAAGGGCAGGACCTAGTCCGCCGGCTGGCCGCCCGCTGCGACGTGTTCGTCGAGAACTACAAGGTGGG
CGACCTGGCCCGCTACGGGCTCGACTACGAGAGCCTGCGCCAGCTCAACCCCGGCCTCGTCTACTGTTCGATCACCGGCT
ACGGCCAGACCGGCCCGATGGCGCGACAGCCGGGGTACGACAGCGTGTTCCAGGCGATGACCGGGATGATGTCGCTGTGC
GGCGAGCCGGACGGCGAGCCGCAGCGCAACGCCGCGCCGCTGGTCGACCACGCCACCGGCCAAGCCGCGCTCGCCGCCAT
CCTGGCGGCCCTGTGGCATCGGCGCGTCAACGGGGGACCTGGACAGCACATCGACATCGCCCTGTTCGACGTCGGCGTCT
CGGCGCTGACGGTGCGGACCCAGGAGTACTTGGTGACGGGCGCATCCCCGTCCCGCGCGGGCAACCGGGTCAAGGGCGCC
GCGCCCGCCCGGCTGGTGGAGACCCGCGACGGCCGGATGACGCTGTCCGCCTTTCGGGAGGCCGATTTCCGCAAGCTCTG
CGACGTCCTGGGCCGCCCCGACCTCAGCCGTGATCCGCGGTTCGAGACGAACGCCCTGCGCGCCGCGAACGAGGCCGAGC
TCGACGCCGAACTGAACCGGCTGTTCGCCGCCGAATCCACGGCCGCATGGGTCGCCCGCCTGCAGGCGGCCAACATCGTC
TGCGCCCCGCTCTATTCAGTCGGGGAGGCGCTGGAGTGCGACCATGCCAAGGCGCGCGGCGTCGTCTGCGACATGATCCG
GCCCGACGGCCAGGGCATACGCCACGTCGCCACGCCGATGCGGTTCTCCGAGACCCCCATCGGGCCGGCCAAGGCGCCGC
CCGACCTCGGCGAGCATACCGACGAGGTCCTCCGGGAATGGCTGGGCGCCTGA

Upstream 100 bases:

>100_bases
TGACGCGCCTCATGAGCGGCGCGGATGCGAAGGAGGGCATGCGCGCCTTCCTGGAACGGCGTGCGCCGGTCTGGAGGGGA
GAGTGAGGGAGGAGCGTTCC

Downstream 100 bases:

>100_bases
AGGCGCGCGCCGGCTCAGCCCTTCGGGGGGAGCGGGGCGATGAACAGGGTCTGGTGCGCGCGGCCGAAGGGTCCCGTCCG
GTCGCTGACGACCGAGTTGA

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MGMPLEGVRVLDLTRVIAGPLCTQMLAELGADVVKVENPEGGDEMRVIGRNKLLRDGVPVEGQTTDFISANRGKRSVTLD
LRTAEGQDLVRRLAARCDVFVENYKVGDLARYGLDYESLRQLNPGLVYCSITGYGQTGPMARQPGYDSVFQAMTGMMSLC
GEPDGEPQRNAAPLVDHATGQAALAAILAALWHRRVNGGPGQHIDIALFDVGVSALTVRTQEYLVTGASPSRAGNRVKGA
APARLVETRDGRMTLSAFREADFRKLCDVLGRPDLSRDPRFETNALRAANEAELDAELNRLFAAESTAAWVARLQAANIV
CAPLYSVGEALECDHAKARGVVCDMIRPDGQGIRHVATPMRFSETPIGPAKAPPDLGEHTDEVLREWLGA

Sequences:

>Translated_390_residues
MGMPLEGVRVLDLTRVIAGPLCTQMLAELGADVVKVENPEGGDEMRVIGRNKLLRDGVPVEGQTTDFISANRGKRSVTLD
LRTAEGQDLVRRLAARCDVFVENYKVGDLARYGLDYESLRQLNPGLVYCSITGYGQTGPMARQPGYDSVFQAMTGMMSLC
GEPDGEPQRNAAPLVDHATGQAALAAILAALWHRRVNGGPGQHIDIALFDVGVSALTVRTQEYLVTGASPSRAGNRVKGA
APARLVETRDGRMTLSAFREADFRKLCDVLGRPDLSRDPRFETNALRAANEAELDAELNRLFAAESTAAWVARLQAANIV
CAPLYSVGEALECDHAKARGVVCDMIRPDGQGIRHVATPMRFSETPIGPAKAPPDLGEHTDEVLREWLGA
>Mature_389_residues
GMPLEGVRVLDLTRVIAGPLCTQMLAELGADVVKVENPEGGDEMRVIGRNKLLRDGVPVEGQTTDFISANRGKRSVTLDL
RTAEGQDLVRRLAARCDVFVENYKVGDLARYGLDYESLRQLNPGLVYCSITGYGQTGPMARQPGYDSVFQAMTGMMSLCG
EPDGEPQRNAAPLVDHATGQAALAAILAALWHRRVNGGPGQHIDIALFDVGVSALTVRTQEYLVTGASPSRAGNRVKGAA
PARLVETRDGRMTLSAFREADFRKLCDVLGRPDLSRDPRFETNALRAANEAELDAELNRLFAAESTAAWVARLQAANIVC
APLYSVGEALECDHAKARGVVCDMIRPDGQGIRHVATPMRFSETPIGPAKAPPDLGEHTDEVLREWLGA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=386, Percent_Identity=35.7512953367876, Blast_Score=257, Evalue=1e-68,
Organism=Homo sapiens, GI300863124, Length=412, Percent_Identity=34.4660194174757, Blast_Score=247, Evalue=2e-65,
Organism=Homo sapiens, GI300863126, Length=386, Percent_Identity=32.1243523316062, Blast_Score=214, Evalue=1e-55,
Organism=Homo sapiens, GI13376042, Length=412, Percent_Identity=30.0970873786408, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI266456254, Length=391, Percent_Identity=28.9002557544757, Blast_Score=142, Evalue=7e-34,
Organism=Homo sapiens, GI42794625, Length=391, Percent_Identity=28.9002557544757, Blast_Score=141, Evalue=8e-34,
Organism=Homo sapiens, GI266458397, Length=268, Percent_Identity=31.3432835820896, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI266458393, Length=269, Percent_Identity=31.2267657992565, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI42822893, Length=153, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI266458395, Length=153, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI87082093, Length=387, Percent_Identity=34.1085271317829, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1788717, Length=409, Percent_Identity=31.7848410757946, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1786222, Length=391, Percent_Identity=26.0869565217391, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=332, Percent_Identity=28.0120481927711, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=311, Percent_Identity=29.903536977492, Blast_Score=110, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24648431, Length=389, Percent_Identity=40.1028277634961, Blast_Score=279, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24585488, Length=343, Percent_Identity=26.530612244898, Blast_Score=111, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42102; Mature: 41971

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMPLEGVRVLDLTRVIAGPLCTQMLAELGADVVKVENPEGGDEMRVIGRNKLLRDGVPV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEECCCHHHHCCCCC
EGQTTDFISANRGKRSVTLDLRTAEGQDLVRRLAARCDVFVENYKVGDLARYGLDYESLR
CCCCCCCEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
QLNPGLVYCSITGYGQTGPMARQPGYDSVFQAMTGMMSLCGEPDGEPQRNAAPLVDHATG
HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
QAALAAILAALWHRRVNGGPGQHIDIALFDVGVSALTVRTQEYLVTGASPSRAGNRVKGA
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHEEEEHHHHEEECCCCCCCCCCCCCC
APARLVETRDGRMTLSAFREADFRKLCDVLGRPDLSRDPRFETNALRAANEAELDAELNR
CCHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHH
LFAAESTAAWVARLQAANIVCAPLYSVGEALECDHAKARGVVCDMIRPDGQGIRHVATPM
HHHHHHHHHHHHHHHHCCEEEECHHHHCCHHCCCCHHHCCEEEEEECCCCCCCHHHHCCC
RFSETPIGPAKAPPDLGEHTDEVLREWLGA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
GMPLEGVRVLDLTRVIAGPLCTQMLAELGADVVKVENPEGGDEMRVIGRNKLLRDGVPV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEECCCHHHHCCCCC
EGQTTDFISANRGKRSVTLDLRTAEGQDLVRRLAARCDVFVENYKVGDLARYGLDYESLR
CCCCCCCEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
QLNPGLVYCSITGYGQTGPMARQPGYDSVFQAMTGMMSLCGEPDGEPQRNAAPLVDHATG
HCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCC
QAALAAILAALWHRRVNGGPGQHIDIALFDVGVSALTVRTQEYLVTGASPSRAGNRVKGA
HHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHEEEEHHHHEEECCCCCCCCCCCCCC
APARLVETRDGRMTLSAFREADFRKLCDVLGRPDLSRDPRFETNALRAANEAELDAELNR
CCHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHH
LFAAESTAAWVARLQAANIVCAPLYSVGEALECDHAKARGVVCDMIRPDGQGIRHVATPM
HHHHHHHHHHHHHHHHCCEEEECHHHHCCHHCCCCHHHCCEEEEEECCCCCCCHHHHCCC
RFSETPIGPAKAPPDLGEHTDEVLREWLGA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]