Click here to switch to the map view.

The map label for this gene is xynZ [H]

Identifier: 197105944

GI number: 197105944

Start: 2846586

End: 2847674

Strand: Direct

Name: xynZ [H]

Synonym: PHZ_c2483

Alternate gene names: 197105944

Gene position: 2846586-2847674 (Clockwise)

Preceding gene: 197105938

Following gene: 197105948

Centisome position: 71.23

GC content: 74.1

Gene sequence:

>1089_bases
ATGAGGCTGCTGGATAGACGCGGACTGCTGGCCGGCCTGGCCGCCGGCCCGCTGCTCCTGGCCGCGCCCAGGCCGGGCGC
CCAGGCCCTGCCGAACGGGCCCTCGCTGGCCGCCGCCGCGGCCCGCGGCGGGCGCTACTTCGGCGCCGCGGCCCGCATCG
ACCAGATCCGCGCCGAGCGCGCCCTGCGCCGGACCGTGCTCCGCGACTGCGCCTGGATCACGCCCGAGTTCCACATGAAC
TGGGACTACGTCGCCCCGCGCTCCGGCGCCTGGAACTTCCGCGACGCCGACGGCCTCGTGGCCTTCGCCGGCGAGGCCGG
GCTGAAGGTCCGCGGCCACAGCCTGATCTGGGACCAGAGCACCCCCGCCTGGGCCGCGGCCGAGATGGTGGAGCGCCGGG
ACTGGGAGACCGTCGCCCGCCACTTCCAGCGGGTGATGGGACGCTGGGGCGAACGGGTGCAGGCCTGGGACGTGGTCAAC
GAGCCGATCGCCCGCGACGGCCGGGGCCTGCTGCCCAGCATGTTCCTAGAGGCCTATGGCCCGGACTACGTCCGCCGCGC
CTTCGACGAGGCCCGGGCGCTTCAGCCGCAGGCGCGCCTGGCCGTCAACGACTACGGCTTCGACTACGACAATCCCGTCG
AGGAGGCCCGGCGAGGCAGCTTCCTGCGCCTGCTGGAAGACCTGAAGGCAAAGGGCGCGCCGGTGGACGAGGTCGGGATC
CAGGCGCACCTCGATCTCGGCAAGGGGCCGCTCAGGCGGCGCATCGTGGCCCCGTTCCTGCGCGAGATCGGCCAGATGGG
CTACCGGATCGTCATCTCCGAGCTGGACGTGCGCGAGCGGGACTTCACCCTTCCCCTGGTCGAGCGCGACCGGCGCGTGG
CCGACGAGGTCCGCGCCTACCTCGAGATCGCCCTGGCCGAGCCGGCGGTGGAGGGCGTGGTCACCTGGGGCCTCTCCGAC
CGGCACTCCTGGCTGCAGGACGACGAGGCCGCGGCGCTGGGCGGGGTCAACCGCGGCCTGCCCTACGACCACGGCCTGCG
CCCCAAGCCCATGTACTGGGCCCTGCGCGACACCCTGGCTGCGGCCTGA

Upstream 100 bases:

>100_bases
GGGAGCGGGCCCTTCCCGCACTCGTCAACCAAGCGGCTGCACCGAACCTTAAGCGAATCCTGGCATCCACGACCTCGCCG
CTCTCGCGAGGAGGACGCGG

Downstream 100 bases:

>100_bases
CCGGCGCACCCGTCACACGACCAGCCGGCTCTCGGTGAGCTCGGCGAGGCTCTGGGCCGCGCGATCCTGCGGCCGGGGCG
CCCGGGCCACCCAGTCGATC

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MRLLDRRGLLAGLAAGPLLLAAPRPGAQALPNGPSLAAAAARGGRYFGAAARIDQIRAERALRRTVLRDCAWITPEFHMN
WDYVAPRSGAWNFRDADGLVAFAGEAGLKVRGHSLIWDQSTPAWAAAEMVERRDWETVARHFQRVMGRWGERVQAWDVVN
EPIARDGRGLLPSMFLEAYGPDYVRRAFDEARALQPQARLAVNDYGFDYDNPVEEARRGSFLRLLEDLKAKGAPVDEVGI
QAHLDLGKGPLRRRIVAPFLREIGQMGYRIVISELDVRERDFTLPLVERDRRVADEVRAYLEIALAEPAVEGVVTWGLSD
RHSWLQDDEAAALGGVNRGLPYDHGLRPKPMYWALRDTLAAA

Sequences:

>Translated_362_residues
MRLLDRRGLLAGLAAGPLLLAAPRPGAQALPNGPSLAAAAARGGRYFGAAARIDQIRAERALRRTVLRDCAWITPEFHMN
WDYVAPRSGAWNFRDADGLVAFAGEAGLKVRGHSLIWDQSTPAWAAAEMVERRDWETVARHFQRVMGRWGERVQAWDVVN
EPIARDGRGLLPSMFLEAYGPDYVRRAFDEARALQPQARLAVNDYGFDYDNPVEEARRGSFLRLLEDLKAKGAPVDEVGI
QAHLDLGKGPLRRRIVAPFLREIGQMGYRIVISELDVRERDFTLPLVERDRRVADEVRAYLEIALAEPAVEGVVTWGLSD
RHSWLQDDEAAALGGVNRGLPYDHGLRPKPMYWALRDTLAAA
>Mature_362_residues
MRLLDRRGLLAGLAAGPLLLAAPRPGAQALPNGPSLAAAAARGGRYFGAAARIDQIRAERALRRTVLRDCAWITPEFHMN
WDYVAPRSGAWNFRDADGLVAFAGEAGLKVRGHSLIWDQSTPAWAAAEMVERRDWETVARHFQRVMGRWGERVQAWDVVN
EPIARDGRGLLPSMFLEAYGPDYVRRAFDEARALQPQARLAVNDYGFDYDNPVEEARRGSFLRLLEDLKAKGAPVDEVGI
QAHLDLGKGPLRRRIVAPFLREIGQMGYRIVISELDVRERDFTLPLVERDRRVADEVRAYLEIALAEPAVEGVVTWGLSD
RHSWLQDDEAAALGGVNRGLPYDHGLRPKPMYWALRDTLAAA

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 40432; Mature: 40432

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLDRRGLLAGLAAGPLLLAAPRPGAQALPNGPSLAAAAARGGRYFGAAARIDQIRAER
CCCCHHCCHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHH
ALRRTVLRDCAWITPEFHMNWDYVAPRSGAWNFRDADGLVAFAGEAGLKVRGHSLIWDQS
HHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCEEECCEEEECCC
TPAWAAAEMVERRDWETVARHFQRVMGRWGERVQAWDVVNEPIARDGRGLLPSMFLEAYG
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHCC
PDYVRRAFDEARALQPQARLAVNDYGFDYDNPVEEARRGSFLRLLEDLKAKGAPVDEVGI
HHHHHHHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHCC
QAHLDLGKGPLRRRIVAPFLREIGQMGYRIVISELDVRERDFTLPLVERDRRVADEVRAY
EEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
LEIALAEPAVEGVVTWGLSDRHSWLQDDEAAALGGVNRGLPYDHGLRPKPMYWALRDTLA
HHHHHHCHHHHHEEECCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
AA
CC
>Mature Secondary Structure
MRLLDRRGLLAGLAAGPLLLAAPRPGAQALPNGPSLAAAAARGGRYFGAAARIDQIRAER
CCCCHHCCHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHH
ALRRTVLRDCAWITPEFHMNWDYVAPRSGAWNFRDADGLVAFAGEAGLKVRGHSLIWDQS
HHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCEEECCEEEECCC
TPAWAAAEMVERRDWETVARHFQRVMGRWGERVQAWDVVNEPIARDGRGLLPSMFLEAYG
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHCC
PDYVRRAFDEARALQPQARLAVNDYGFDYDNPVEEARRGSFLRLLEDLKAKGAPVDEVGI
HHHHHHHHHHHHHCCCHHHEEEECCCCCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHCC
QAHLDLGKGPLRRRIVAPFLREIGQMGYRIVISELDVRERDFTLPLVERDRRVADEVRAY
EEEECCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
LEIALAEPAVEGVVTWGLSDRHSWLQDDEAAALGGVNRGLPYDHGLRPKPMYWALRDTLA
HHHHHHCHHHHHEEECCCCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]