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The map label for this gene is ccpA [H]

Identifier: 197105933

GI number: 197105933

Start: 2830065

End: 2831477

Strand: Reverse

Name: ccpA [H]

Synonym: PHZ_c2472

Alternate gene names: 197105933

Gene position: 2831477-2830065 (Counterclockwise)

Preceding gene: 197105936

Following gene: 197105931

Centisome position: 70.85

GC content: 75.09

Gene sequence:

>1413_bases
TTGCAGCCGAAGCCCGCCCGCCGTCAGAAGAGCGCGCTCACGATCCACGACGTGGCCCGGTACGCCGGCGTCTCGCCGAT
GACCGTCTCGCGCGTGATCAACGGCGAGAAGAACGTCCGGGAGTCGACCCGCGAGGCGGTGAACGCCGCGATCCGGGCCC
TGAACTACCAGCCCAACCCCGCGGCGCGCAGCTTGGCCGGCGCCGACCTCGTGCGCATCGGCCTGCTCTATTCCAACCCG
TCGGCGGCCTACCTCAGCGAGTTCCTGGTCGGCGGCCTGGACCAGGTCAGCCGCAGCAACATCCAGCTCGTCGTCGAGAA
GTGCGACGAGGAGGCGGCCGAGGCCGCCGCCGCCCGCCTGCTGAACTCGGGGGTCGACGGCATCATCCTGCCGCCGCCGC
TGTGCGACTCCCCGGCGGTGCTGAAGATGCTGGCCGCCAGCCACACGCCGGCCGTGGCCGTCGCCACCGGCCGGCCGCCC
GCGGACGTCTCGGCCGTGCGCATCGACGACTTCGAGGCGGCGCGCCAGATGACCCGGCATCTCGCCGGCCTCGAGGGTCG
GCGGCTCGGGCGAGGGCAGGGCTTCGGCGTCGGCCCTGTAGAACGGATCGGCCAGCGCCCGGTCCAGGCTCACGAACCGC
ACGCCCCGCGAGCGGTAGAGGTCCAGCAGCCGGTCCATCATCCGCGCATCGAAGGCGCCCAGGTGCAGCAGGAGGACGAG
CGGGACCTCGCGCCCCTCGGCCTGCAGCGACAGGGCCCGCGCGCGATCGAGGCTCTCGGCGGCGGCCGCCAGGAAACGGG
CTTCCAGCCCGGCGACCGCGGCGGCGTCGCCGCGGGCGGCGCAGCGCGCGTAGGGATCGTTGTAGGCCCAGTCGCCGAAA
TCGAGGGTGACGCTGGCGATCCGGTAGCCCCGGGCCTGCAGGAAAGACCGGGCGCGGGCGCGGACCTCCGGGGTCTCGCC
CTCGGCCAGGAACGGGTAGCGGAACCAGCGCCACGGGCGGCCCTCGGCCAGCGCGGCCAGCAGCGCCTCGTTGCGCACGA
CGTCGGCCTCGAAGGCGGCGGCCGAGGCCGAGGTGAGGCGCAGGTGGCTCCAGGTGTGGTTGCCGAACGGGCGGCCCGCC
TCGCGCCAGAGCCTGAGGGCGAGGCCCGAGTCGGGCTCGGCCTGCAGGAAGCCGCCGTTGACGAAGCCGGTGGCCGGCGC
CTCGGCCCTCTCCAGGGCCCGCAGGACGTCGCGGGCGACGCCGGCGCGGGTCTCCCCGGGCGGCAGGGCGCTGTGCGCGG
GCAGGTCGTCAAAGGTCAGCGCGATCTCCACCGCCCGCGCCGGCTGCGCCAGCAGCGCGGCGGCCAGGGCGAGCGCCGCC
GCCCTCATCGGTCGAACAGCGACAGCGGCACGGCCTCGGCCATCGCCCTGTAG

Upstream 100 bases:

>100_bases
TCTGACCAATGCCTGCGCGACCTTTTCGAAGGTCGGGAACGGCATGGGCTTGTGGCCGAGCCTTCCGTGGGTCAGACCTA
GGCGTTCGCTGGAGGATGGA

Downstream 100 bases:

>100_bases
CCGGCGATGGACGGGTGCAGGCCGTCCCCAACGTCCAGTTCGGGCCGCAGCCGGTCGGGCCGGGCCGGATCGCGCATCAC
CGCGTCGAAGTCGATCACCG

Product: transcriptional regulator, LacI family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MQPKPARRQKSALTIHDVARYAGVSPMTVSRVINGEKNVRESTREAVNAAIRALNYQPNPAARSLAGADLVRIGLLYSNP
SAAYLSEFLVGGLDQVSRSNIQLVVEKCDEEAAEAAAARLLNSGVDGIILPPPLCDSPAVLKMLAASHTPAVAVATGRPP
ADVSAVRIDDFEAARQMTRHLAGLEGRRLGRGQGFGVGPVERIGQRPVQAHEPHAPRAVEVQQPVHHPRIEGAQVQQEDE
RDLAPLGLQRQGPRAIEALGGGRQETGFQPGDRGGVAAGGAARVGIVVGPVAEIEGDAGDPVAPGLQERPGAGADLRGLA
LGQERVAEPAPRAALGQRGQQRLVAHDVGLEGGGRGRGEAQVAPGVVAERAARLAPEPEGEARVGLGLQEAAVDEAGGRR
LGPLQGPQDVAGDAGAGLPGRQGAVRGQVVKGQRDLHRPRRLRQQRGGQGERRRPHRSNSDSGTASAIAL

Sequences:

>Translated_470_residues
MQPKPARRQKSALTIHDVARYAGVSPMTVSRVINGEKNVRESTREAVNAAIRALNYQPNPAARSLAGADLVRIGLLYSNP
SAAYLSEFLVGGLDQVSRSNIQLVVEKCDEEAAEAAAARLLNSGVDGIILPPPLCDSPAVLKMLAASHTPAVAVATGRPP
ADVSAVRIDDFEAARQMTRHLAGLEGRRLGRGQGFGVGPVERIGQRPVQAHEPHAPRAVEVQQPVHHPRIEGAQVQQEDE
RDLAPLGLQRQGPRAIEALGGGRQETGFQPGDRGGVAAGGAARVGIVVGPVAEIEGDAGDPVAPGLQERPGAGADLRGLA
LGQERVAEPAPRAALGQRGQQRLVAHDVGLEGGGRGRGEAQVAPGVVAERAARLAPEPEGEARVGLGLQEAAVDEAGGRR
LGPLQGPQDVAGDAGAGLPGRQGAVRGQVVKGQRDLHRPRRLRQQRGGQGERRRPHRSNSDSGTASAIAL
>Mature_470_residues
MQPKPARRQKSALTIHDVARYAGVSPMTVSRVINGEKNVRESTREAVNAAIRALNYQPNPAARSLAGADLVRIGLLYSNP
SAAYLSEFLVGGLDQVSRSNIQLVVEKCDEEAAEAAAARLLNSGVDGIILPPPLCDSPAVLKMLAASHTPAVAVATGRPP
ADVSAVRIDDFEAARQMTRHLAGLEGRRLGRGQGFGVGPVERIGQRPVQAHEPHAPRAVEVQQPVHHPRIEGAQVQQEDE
RDLAPLGLQRQGPRAIEALGGGRQETGFQPGDRGGVAAGGAARVGIVVGPVAEIEGDAGDPVAPGLQERPGAGADLRGLA
LGQERVAEPAPRAALGQRGQQRLVAHDVGLEGGGRGRGEAQVAPGVVAERAARLAPEPEGEARVGLGLQEAAVDEAGGRR
LGPLQGPQDVAGDAGAGLPGRQGAVRGQVVKGQRDLHRPRRLRQQRGGQGERRRPHRSNSDSGTASAIAL

Specific function: Transcriptional regulator involved in both the repression of carbohydrate utilization genes and in the positive regulation of genes involved in excretion of excess carbon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786540, Length=199, Percent_Identity=32.6633165829146, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787948, Length=192, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787906, Length=197, Percent_Identity=33.502538071066, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI48994940, Length=185, Percent_Identity=31.3513513513514, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790194, Length=130, Percent_Identity=39.2307692307692, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006377
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 48931; Mature: 48931

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPKPARRQKSALTIHDVARYAGVSPMTVSRVINGEKNVRESTREAVNAAIRALNYQPNP
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
AARSLAGADLVRIGLLYSNPSAAYLSEFLVGGLDQVSRSNIQLVVEKCDEEAAEAAAARL
HHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LNSGVDGIILPPPLCDSPAVLKMLAASHTPAVAVATGRPPADVSAVRIDDFEAARQMTRH
HHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHH
LAGLEGRRLGRGQGFGVGPVERIGQRPVQAHEPHAPRAVEVQQPVHHPRIEGAQVQQEDE
HHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
RDLAPLGLQRQGPRAIEALGGGRQETGFQPGDRGGVAAGGAARVGIVVGPVAEIEGDAGD
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCC
PVAPGLQERPGAGADLRGLALGQERVAEPAPRAALGQRGQQRLVAHDVGLEGGGRGRGEA
CCCCCHHCCCCCCCCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QVAPGVVAERAARLAPEPEGEARVGLGLQEAAVDEAGGRRLGPLQGPQDVAGDAGAGLPG
CCCCCHHHHHHHHCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCC
RQGAVRGQVVKGQRDLHRPRRLRQQRGGQGERRRPHRSNSDSGTASAIAL
CCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECC
>Mature Secondary Structure
MQPKPARRQKSALTIHDVARYAGVSPMTVSRVINGEKNVRESTREAVNAAIRALNYQPNP
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH
AARSLAGADLVRIGLLYSNPSAAYLSEFLVGGLDQVSRSNIQLVVEKCDEEAAEAAAARL
HHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
LNSGVDGIILPPPLCDSPAVLKMLAASHTPAVAVATGRPPADVSAVRIDDFEAARQMTRH
HHCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHH
LAGLEGRRLGRGQGFGVGPVERIGQRPVQAHEPHAPRAVEVQQPVHHPRIEGAQVQQEDE
HHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHH
RDLAPLGLQRQGPRAIEALGGGRQETGFQPGDRGGVAAGGAARVGIVVGPVAEIEGDAGD
CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHCCCCCC
PVAPGLQERPGAGADLRGLALGQERVAEPAPRAALGQRGQQRLVAHDVGLEGGGRGRGEA
CCCCCHHCCCCCCCCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
QVAPGVVAERAARLAPEPEGEARVGLGLQEAAVDEAGGRRLGPLQGPQDVAGDAGAGLPG
CCCCCHHHHHHHHCCCCCCCCCEECCCHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCC
RQGAVRGQVVKGQRDLHRPRRLRQQRGGQGERRRPHRSNSDSGTASAIAL
CCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8878037 [H]