BacMap

Definition	Phenylobacterium zucineum HLK1, complete genome.
Accession	NC_011144
Length	3,996,255

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The map label for this gene is fabG3 [H]

Identifier: 197105929

GI number: 197105929

Start: 2825360

End: 2826112

Strand: Reverse

Name: fabG3 [H]

Synonym: PHZ_c2468

Alternate gene names: 197105929

Gene position: 2826112-2825360 (Counterclockwise)

Preceding gene: 197105930

Following gene: 197105928

Centisome position: 70.72

GC content: 69.06

Gene sequence:

>753_bases
GTGGGCGTGACCTCGGCGATCTACCCCAGCCTGAAGGGCAAGCGCGTCGTCGTCACCGGCGGCGGCTCGGGCATCGGCGC
GGGCCTCGTGGAGGCCTTCGTCCGCCAGGGCGCCGAGGTGCACTTCCTGGACGTGCTCGAGACGGAATCGCGGGTGCTGG
AGACGAGCCTGGCCGGGGCCGAGGTCCCGCCGGTGTTCCATCGCTGCGACCTCACGGACGCCGGCGCGATCGAAGGCTGC
TTCGCGAAGATCGGCCCGGTGCAGGTGCTGGTGAACAACGCCGGCAATGACGACCGTCACACGCTGGACGAGGTGACGCC
GGCCTATTTCGACGACCGGATCGCGGTGAACCTGCGGCACATGGTGTTCTGCGCCAAGGCCGTGGTCCCGGCGATGAAGG
CCGCGGGCGAAGGCGCAATCATCAACTTCGGCTCCATTTCCTGGCACCTCGGGCTGCCGGACCTCGTGCTCTACGAGACC
GCCAAGGCGGGAATCGAGGGCATGACCCGGGCGCTGGCGCGCGAACTGGGCCCCTTCGGCATCCGCGTCACCTGCGTGGC
GCCCGGCAACGTCAAGACGCTCCGGCAGATGAAGTGGTACACGCCCGAGGGCGAGGCCGAGATCGTCGCCCAGCAATGCC
TGAAGTCGCGGATCGAGCCCGCGGACGTGGCGGCGCTGGTGCTCTTCCTGGCTTCGGACGACGCGCGCATGTGCACCGGC
CACGAATACTGGATCGACGCAGGCTGGCGATGA

Upstream 100 bases:

>100_bases
ACCACGTGCCCTTCGGCGGCATAAAGAAGTCGAGCTACGGCGCCCGCGAGCAGGGCTTCGCGGCGGTCGAGTTCTACACC
CAGACGAAGACGGCCTACTC

Downstream 100 bases:

>100_bases
AGGTCCTCTCCGAACCCGACTGCGTGCTGCGCGCCGACGCCGAGCTGGGCGAGGGGCCCGTCTGGCGGGCCGACGACGAC
GCGGTCTGGTTCGTGGACAT

Product: oxidoreductase, short-chain dehydrogenase/reductase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MGVTSAIYPSLKGKRVVVTGGGSGIGAGLVEAFVRQGAEVHFLDVLETESRVLETSLAGAEVPPVFHRCDLTDAGAIEGC
FAKIGPVQVLVNNAGNDDRHTLDEVTPAYFDDRIAVNLRHMVFCAKAVVPAMKAAGEGAIINFGSISWHLGLPDLVLYET
AKAGIEGMTRALARELGPFGIRVTCVAPGNVKTLRQMKWYTPEGEAEIVAQQCLKSRIEPADVAALVLFLASDDARMCTG
HEYWIDAGWR

Sequences:

>Translated_250_residues
MGVTSAIYPSLKGKRVVVTGGGSGIGAGLVEAFVRQGAEVHFLDVLETESRVLETSLAGAEVPPVFHRCDLTDAGAIEGC
FAKIGPVQVLVNNAGNDDRHTLDEVTPAYFDDRIAVNLRHMVFCAKAVVPAMKAAGEGAIINFGSISWHLGLPDLVLYET
AKAGIEGMTRALARELGPFGIRVTCVAPGNVKTLRQMKWYTPEGEAEIVAQQCLKSRIEPADVAALVLFLASDDARMCTG
HEYWIDAGWR
>Mature_249_residues
GVTSAIYPSLKGKRVVVTGGGSGIGAGLVEAFVRQGAEVHFLDVLETESRVLETSLAGAEVPPVFHRCDLTDAGAIEGCF
AKIGPVQVLVNNAGNDDRHTLDEVTPAYFDDRIAVNLRHMVFCAKAVVPAMKAAGEGAIINFGSISWHLGLPDLVLYETA
KAGIEGMTRALARELGPFGIRVTCVAPGNVKTLRQMKWYTPEGEAEIVAQQCLKSRIEPADVAALVLFLASDDARMCTGH
EYWIDAGWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705925, Length=241, Percent_Identity=34.0248962655602, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=32.7510917030568, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI66933014, Length=246, Percent_Identity=31.3008130081301, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=29.5081967213115, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI15277342, Length=263, Percent_Identity=30.0380228136882, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=31.5573770491803, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=27.3809523809524, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI126723750, Length=169, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4758504, Length=241, Percent_Identity=31.5352697095436, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI4503817, Length=232, Percent_Identity=26.2931034482759, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI20149619, Length=228, Percent_Identity=29.3859649122807, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031737, Length=238, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=29.045643153527, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI210032110, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=29.0155440414508, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.9411764705882, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=32.3770491803279, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.3253012048193, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=26.2295081967213, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=29.0322580645161, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=28.2786885245902, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789378, Length=237, Percent_Identity=26.5822784810127, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=28.5140562248996, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI2367175, Length=241, Percent_Identity=27.3858921161826, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788459, Length=178, Percent_Identity=29.7752808988764, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786812, Length=251, Percent_Identity=25.4980079681275, Blast_Score=68, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=31.1475409836066, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=29.5719844357977, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI25147288, Length=244, Percent_Identity=30.327868852459, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=30.5882352941176, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17531453, Length=248, Percent_Identity=29.4354838709677, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=28.9795918367347, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=244, Percent_Identity=28.6885245901639, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17536025, Length=266, Percent_Identity=26.6917293233083, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=246, Percent_Identity=31.7073170731707, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560220, Length=244, Percent_Identity=28.2786885245902, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17536651, Length=264, Percent_Identity=27.6515151515151, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=249, Percent_Identity=30.5220883534137, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=265, Percent_Identity=27.1698113207547, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=174, Percent_Identity=26.4367816091954, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=247, Percent_Identity=31.1740890688259, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=189, Percent_Identity=26.984126984127, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=197, Percent_Identity=26.9035532994924, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=258, Percent_Identity=24.8062015503876, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=191, Percent_Identity=27.2251308900524, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=24.4, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=28.8389513108614, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=251, Percent_Identity=27.0916334661355, Blast_Score=66, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=237, Percent_Identity=26.5822784810127, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=32.9268292682927, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=29.2, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=27.7551020408163, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=28.6852589641434, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24639444, Length=253, Percent_Identity=28.8537549407115, Blast_Score=85, Evalue=5e-17,
Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=28.2868525896414, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=27.8225806451613, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=32.7485380116959, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21358495, Length=267, Percent_Identity=25.0936329588015, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24641232, Length=233, Percent_Identity=25.7510729613734, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.53 [H]

Molecular weight: Translated: 26767; Mature: 26636

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTSAIYPSLKGKRVVVTGGGSGIGAGLVEAFVRQGAEVHFLDVLETESRVLETSLAGA
CCCCCHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCC
EVPPVFHRCDLTDAGAIEGCFAKIGPVQVLVNNAGNDDRHTLDEVTPAYFDDRIAVNLRH
CCCCHHEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHCCHHHCCCCCEEHHHH
MVFCAKAVVPAMKAAGEGAIINFGSISWHLGLPDLVLYETAKAGIEGMTRALARELGPFG
HHHHHHHHHHHHHHCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
IRVTCVAPGNVKTLRQMKWYTPEGEAEIVAQQCLKSRIEPADVAALVLFLASDDARMCTG
EEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECC
HEYWIDAGWR
CEEEEECCCC
>Mature Secondary Structure 
GVTSAIYPSLKGKRVVVTGGGSGIGAGLVEAFVRQGAEVHFLDVLETESRVLETSLAGA
CCCCHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCC
EVPPVFHRCDLTDAGAIEGCFAKIGPVQVLVNNAGNDDRHTLDEVTPAYFDDRIAVNLRH
CCCCHHEECCCCCCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHCCHHHCCCCCEEHHHH
MVFCAKAVVPAMKAAGEGAIINFGSISWHLGLPDLVLYETAKAGIEGMTRALARELGPFG
HHHHHHHHHHHHHHCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
IRVTCVAPGNVKTLRQMKWYTPEGEAEIVAQQCLKSRIEPADVAALVLFLASDDARMCTG
EEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEECC
HEYWIDAGWR
CEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]