| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is fiu [H]
Identifier: 197105899
GI number: 197105899
Start: 2785652
End: 2787898
Strand: Reverse
Name: fiu [H]
Synonym: PHZ_c2438
Alternate gene names: 197105899
Gene position: 2787898-2785652 (Counterclockwise)
Preceding gene: 197105900
Following gene: 197105898
Centisome position: 69.76
GC content: 63.55
Gene sequence:
>2247_bases ATGCACCACACCAGGGCCATTCTGGCCATCGGCACCGCGCTCGGATCGAGCCTCATCTGCTTCAGCGCCGCACAGGCGCA GTCGGCGGCGCCAGCTGCGCAGTCGACGACCGCCGAAGGCGAACTCGCGGAGATCGTCGTCATCGCCCGAGGGCGGGCCG AGTCGCTGCAGACCGTTCCGATCGCCGTTTCGAGCTTCGATGCGAAGACGATCGAAGACGCCGGCATCGAGCGCCCGGCT GACTTCATCAGCTTCACGCCGAATGTCTCGGTGGCTGAGACCCAGCAGCCCGGCACGGCCTTCATCACCATTCGCGGCAT CTCTCAGGTGCGCAACGGCGAATCCCCTGTGGCTGTCGTCGTGGACGGCGTGCTCCAGACGGTGAGCAACCAGTTCAACA CTGAGCTTTTCGACCTGCAGCAGATCGAAGTCCTGAAGGGGCCGCAGGGCGCGCTCTACGGGCGCAACTCGATCGGCGGC GCCATCGTCGTAACGACCCGAGCGCCCTCCGATGAGTTCTTCGGTCGCGTGACCGTCGGCGCCGGCAACGGTGATCAGCA CAAGGCTCAGATCGGCGTGAGCGGCCCCATCATCGAGGGGAGGCTGTTCGGCAGCATCGCCGGCTCGTTCAGGAGCCGCG AGGGCTTTCTTGAGAACGTCTACCTGAACAAGAAGGTGGACTTCCTGCGGGACACCGCCGTGCGCGGGCGCCTGATCTTC GACGCGACCGATGCGCTCAAGATCGACTACCGGGCCTCCTACAACCGCACCCACTCAGGCGCCCTCTACTTCAAGCGCAA CAACGTGCTGGCGTCGGGCTTCTACCAGTTCTATCCGACGGTCCGTTCAACGGCCTCGAACCCTGGGTCGCCGGACGACT ACGGACCGCCCCTGAACTCCAACATCGATGGCGACGCGCTCCGCAAGATCTATTCGACGTCGCTGAAGGTCGATCTGGAG ACCAGCCTCGGAACCCTGACGTCCACCTCGTCCTACGACGAGGTGAGCGAGCTGACGCTGGCGGACGCCAGCCCCTATAC GAGCGCCGCGGCTGGCACACAGACCAGCAACTTCATGTGGTTCGCCAGGAGCACTGAACTGCGGCTGACGTCGCCCAGCG ATCAGCGCCTGCGCTATATCGTCGGCGGCTACTACCTGGATCTCGCGCGTAAATCACGGCGAGCCAACGGCGTCGATACG GGCCCAGGCATCGTTTTGCCGGGCTACAATCCGGCGAATTCGGTCAACCCATCGACCAACAACACGGCCGACAACAATGA CCAGACCTCCTATGCCCTGTTCGGCCAGCTGAATTTCGACATCACCGAACAGCTCGAGCTCGCCGGCGCCATCCGTTACG ATCACGACAAGCGGGACACGCTCAACGTCAGCCATCCGAAGGACGCGGGGTCGCTGCCCACGTACACGCCCGTCGGAACG CCTGGCGCCTACCGCGAGGCTTCGTTCGACGCCTGGCAGCCGAAGGTCACCCTCCGGTACAAGATCGACAGCGGCACGTC GGTCTACGCAAGCTACTCAAAGGGCTTCCGCAGCGGCGGATTCAACCAGGATGGCGTACGCGCCATCGCCCTGCGCCTGA ACCCGAACTCCGCCGTGACGGATGACTACAAGAAGGAGATCTCCACCTCCTGGGAGGCCGGCTTCAAGGCGCGCTTCCTG GACCGGCGACTGACGCTGAATGGTGCGGTGTTCCACACCAGGTTCAACAACGCGCAGTATTTCGTGTTCATCCCCGAGGC TAGCGCCCAGATCATCACGAACATCGACAAGGCGACGATGAAGGGGGCTGAGCTCGACGTCAGCTTCCGGCCGATGACGG GTTGGGAGATCTACGGCAACGTCGGCTACACCGACGCTGAAATCGACAAGTACGTTCAGCTGCCGGCTTCCGAGGGCAAG ACCATGCCCTACGTGCCAAAGCTCGGATACAGCCTCGGCACCCAGTACACCTACGCGCTCACGGGTGACCTCGACCTCAT CGGCCGCGTCGATCTGCACCACAAGGGCAGGCAGTACTGGGAGACCCTGAATACCGCCGGCGCGCGATCGGCCTTCAACC TCGTCGACGCTCGCGTGTCCATCGCGGATGCCGATCGCAGATGGAAGCTGAGCGCCTGGACGAAGAACGCCTTCGACAAG AAGTACCTCTCCGAGTTCGTCGGCGGTGGCTTCGCCTATCCGGGTGAGCCGCGCTCCTACGGGATCGAGCTCGACTACGA GTTTTAG
Upstream 100 bases:
>100_bases GCCAAGGAGCGGCCTGGTTACGACGTGCCGTCTCTCAAAGAGCGGCGCTAACCGGACGCCCCGTCGCGTTCAAAAAAAAC ACTCAACAGGGGGCTTCATC
Downstream 100 bases:
>100_bases GCAGGCGTTGCGGAGGGGTCAGCTGCGGCGCATCGCGTTGCGGCTGACCGCTCCGGCATTGAGAGTACGGGACGCGTGGC GACAGAGGTCCCATGGCGTC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Ferric iron uptake protein; TonB-dependent receptor fiu [H]
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVPIAVSSFDAKTIEDAGIERPA DFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVVVDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGG AIVVTTRAPSDEFFGRVTVGAGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNSNIDGDALRKIYSTSLKVDLE TSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMWFARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDT GPGIVLPGYNPANSVNPSTNNTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVTDDYKKEISTSWEAGFKARFL DRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATMKGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGK TMPYVPKLGYSLGTQYTYALTGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK KYLSEFVGGGFAYPGEPRSYGIELDYEF
Sequences:
>Translated_748_residues MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVPIAVSSFDAKTIEDAGIERPA DFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVVVDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGG AIVVTTRAPSDEFFGRVTVGAGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNSNIDGDALRKIYSTSLKVDLE TSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMWFARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDT GPGIVLPGYNPANSVNPSTNNTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVTDDYKKEISTSWEAGFKARFL DRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATMKGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGK TMPYVPKLGYSLGTQYTYALTGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK KYLSEFVGGGFAYPGEPRSYGIELDYEF >Mature_748_residues MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVPIAVSSFDAKTIEDAGIERPA DFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVVVDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGG AIVVTTRAPSDEFFGRVTVGAGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNSNIDGDALRKIYSTSLKVDLE TSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMWFARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDT GPGIVLPGYNPANSVNPSTNNTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVTDDYKKEISTSWEAGFKARFL DRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATMKGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGK TMPYVPKLGYSLGTQYTYALTGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK KYLSEFVGGGFAYPGEPRSYGIELDYEF
Specific function: Involved in the active transport across the outer membrane of iron complexed with catecholate siderophores such as dihydroxybenzoylserine and dihydroxybenzoate. It derives its energy for transport by interacting with the trans-periplasmic membrane protein
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787024, Length=384, Percent_Identity=24.7395833333333, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1788478, Length=211, Percent_Identity=26.5402843601896, Blast_Score=67, Evalue=5e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 81543; Mature: 81543
Theoretical pI: Translated: 6.28; Mature: 6.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVP CCCCEEEEEEHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE IAVSSFDAKTIEDAGIERPADFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVV EEEECCCCCHHHHCCCCCCHHHEEECCCCCEEECCCCCEEEEEEEEHHHHCCCCCCEEEE VDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGGAIVVTTRAPSDEFFGRVTVG HHHHHHHHHHHHCCCHHCCEEEHEEECCCCCEECCCCCCCEEEEEECCCCHHHCEEEEEE AGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF CCCCCCCEEEECCCCCEECCEEHHHHHHHHHCCCCCHHEEEECCCHHHHHHHHHCCEEEE DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNS ECCCEEEEEEECCCCCCCCCEEEEEECCEEECCHHHHCCHHHHCCCCCCCCCCCCCCCCC NIDGDALRKIYSTSLKVDLETSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMW CCCHHHHHHHHHCCEEEEECCCCCCEECCCCCHHHHHEEEECCCCCCCCCCCCCCCCEEE FARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDTGPGIVLPGYNPANSVNPSTN EEECCEEEEECCCCCCEEEEECCEEEEHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCC NTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT CCCCCCCCCEEEEEEEECCCHHHHHHHHEEEEECCCCCCEECCCCCCCCCCCCCCCCCCC PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVT CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEHHCCCCCCCCCCCCEEEEEEEECCCCCCC DDYKKEISTSWEAGFKARFLDRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATM CHHHHHHCCCCCCCCEEEEECCEEEECCEEEEEEECCCEEEEEECCCCCHHHHCCHHHHC KGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGKTMPYVPKLGYSLGTQYTYAL CCCEEEEEECCCCCEEEECCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEE TGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK ECCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCEEEEEHHHCCHHHH KYLSEFVGGGFAYPGEPRSYGIELDYEF HHHHHHHCCCCCCCCCCCCEEEEEEECC >Mature Secondary Structure MHHTRAILAIGTALGSSLICFSAAQAQSAAPAAQSTTAEGELAEIVVIARGRAESLQTVP CCCCEEEEEEHHHHCCCEEEEEHHHHCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEE IAVSSFDAKTIEDAGIERPADFISFTPNVSVAETQQPGTAFITIRGISQVRNGESPVAVV EEEECCCCCHHHHCCCCCCHHHEEECCCCCEEECCCCCEEEEEEEEHHHHCCCCCCEEEE VDGVLQTVSNQFNTELFDLQQIEVLKGPQGALYGRNSIGGAIVVTTRAPSDEFFGRVTVG HHHHHHHHHHHHCCCHHCCEEEHEEECCCCCEECCCCCCCEEEEEECCCCHHHCEEEEEE AGNGDQHKAQIGVSGPIIEGRLFGSIAGSFRSREGFLENVYLNKKVDFLRDTAVRGRLIF CCCCCCCEEEECCCCCEECCEEHHHHHHHHHCCCCCHHEEEECCCHHHHHHHHHCCEEEE DATDALKIDYRASYNRTHSGALYFKRNNVLASGFYQFYPTVRSTASNPGSPDDYGPPLNS ECCCEEEEEEECCCCCCCCCEEEEEECCEEECCHHHHCCHHHHCCCCCCCCCCCCCCCCC NIDGDALRKIYSTSLKVDLETSLGTLTSTSSYDEVSELTLADASPYTSAAAGTQTSNFMW CCCHHHHHHHHHCCEEEEECCCCCCEECCCCCHHHHHEEEECCCCCCCCCCCCCCCCEEE FARSTELRLTSPSDQRLRYIVGGYYLDLARKSRRANGVDTGPGIVLPGYNPANSVNPSTN EEECCEEEEECCCCCCEEEEECCEEEEHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCC NTADNNDQTSYALFGQLNFDITEQLELAGAIRYDHDKRDTLNVSHPKDAGSLPTYTPVGT CCCCCCCCCEEEEEEEECCCHHHHHHHHEEEEECCCCCCEECCCCCCCCCCCCCCCCCCC PGAYREASFDAWQPKVTLRYKIDSGTSVYASYSKGFRSGGFNQDGVRAIALRLNPNSAVT CCCCCCCCCCCCCCCEEEEEEECCCCEEEEEHHCCCCCCCCCCCCEEEEEEEECCCCCCC DDYKKEISTSWEAGFKARFLDRRLTLNGAVFHTRFNNAQYFVFIPEASAQIITNIDKATM CHHHHHHCCCCCCCCEEEEECCEEEECCEEEEEEECCCEEEEEECCCCCHHHHCCHHHHC KGAELDVSFRPMTGWEIYGNVGYTDAEIDKYVQLPASEGKTMPYVPKLGYSLGTQYTYAL CCCEEEEEECCCCCEEEECCCCCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEE TGDLDLIGRVDLHHKGRQYWETLNTAGARSAFNLVDARVSIADADRRWKLSAWTKNAFDK ECCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCEEEEEHHHCCHHHH KYLSEFVGGGFAYPGEPRSYGIELDYEF HHHHHHHCCCCCCCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]