| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is 197105890
Identifier: 197105890
GI number: 197105890
Start: 2770842
End: 2773196
Strand: Reverse
Name: 197105890
Synonym: PHZ_c2429
Alternate gene names: NA
Gene position: 2773196-2770842 (Counterclockwise)
Preceding gene: 197105891
Following gene: 197105889
Centisome position: 69.39
GC content: 68.07
Gene sequence:
>2355_bases ATGACCATCGCGCGTGTCTACGACTTGAGACCTGCCCAGGTCAGCTGGACGGACACGCTTGGCGATCCGCCGGAGGGCGC CTGGCGGCGTCTCGAGCGCAGGCTGCTTGGTGGGGGCCGGTGGAAGCCGGCGCAGGTCGAGAGTCTCGCCTCTGAATCTG CGCGCGTGCTGCGGCACCTGCCGGATCCGAGGCAGACCAGCGCATTCCAGGGGCGCGGGCTCGTGGTGGGCTACGTGCAG AGCGGCAAGACCGCCAACTACACGGCGGTCGCAGCCCGCGCCGTCGACGCTGGCTACCGCCTGGTGATCGTGCTTTCGGG CATTCACGACGCCCTTCGCAATCAGACCCAGGTGCGGCTCGAAGAAGAGCTTGTCGGCGTCGATGAACCCGGCGGGCCGC GCTGGCGTCTGCTGACCACGCGCGAGGGCGACTTCCGCGAACCCGAGGAAGATGTGCTGGCCGACGACGGCGCCTTCCTG ATCGTGGCCAAGAAGAACGTACCCGTCCTGAAGCGCCTGGATGGGTGGCTCGAGGCGGTCGCGTCGCGCCTGCAGGGCGT GCCCGTGCTGCTCATCGACGATGAAGCGGATCAGGCTTCGATCAACACGCGGGCCAATCGGGCGCCTGACCCCTCCCTGG ATTCAGAGGGGACCACGGCGGCGCCAAGCGGCGCCGGACCCAGCGCGACGAACGCCCTCATCCGCTCGATGCTTGGACGT GCCCCACAGGCCGCCTACGTGGCCTACACCGCCACGCCGTTCGCGAACATCTTCATCGATCCCGACGCAGTCGATCGAGA CGTCGGCGAAGACCTGTTTCCACGCGACTTCGCCCTGCAGCTGCCTCGCCCGGAAGGCTACACCGGGACGGAGGAGCTGT TCGGGGTCTCCGCTCAGGGACGAGACGTTTTCCGGCGGGTGCCGGACGAGGACGTCAGCGCGCTTCGGCAGGCGACCACT CGCCGGAGCGCAAGGCCCGTTACGGTGCGCGCCGAAGAGCAGCTGCTGCCGAACTCGCTGACCGACGCCATTCTGGCCTT CTGCCTCGCAGGGGCGATCCGGGAAGGACGTCCTGGGCTTCAGGGCAAGCCGCACACGATGCTGGTTCACGTGAGCGTGC GGGTTGAAGACCAGACCCAGGTGCGCGCCGCGATTGAGGCCCAGGTGGATCTCTGGCTCGAGGCGATGCGCCAGGGCCAC GACCTGACCGCGTTGTTCGTCGAAGCGCTCGAAACCCATTTCCGGGGTGTGTCGACCCCCCTGGACCCGCAGGCCACGGC GCAGGCGGCGATCTCAGTGCTGCGGAGTCTCGACGTCCTGGAGCTCAACAGCGTCACGGGGGAAAACCTCGAATACGACA CACGTCCGGCGCGGCACATCATCGCCGTGGGCGGGAACCGGCTGTCGCGCGGCCTGACCCTGGAAGGCCTGACGGTCTCG TACTTCCTCAGAACTGCGTCGATGGCTGACACCCTGCTCCAGATGGCGCGGTGGTACGGCTTCCGCACAGGCTACGAGGA TCTGATCAGGATCTGGACGACCGACGGGATCGCGCAGTGGTTCACTGAGCTGGCGCTCGTTGAAGAGAGCCTGCGGGACA GCCTCCAGGCTCTCTATCGCGCCGGCCGCAGGCCCTCCGAGATGGCCATTCGCCTGCGCTCGCACAGCGCGCTCCTGCTG ACGGCGAAGAACAAGGCCGCCATGGCCGAGACCCTGACCCTCTCGTGGTCGGGCGAGCATCCGCAGACCGTGATTCTGCC GCTGCATGACCACACCCGGCTGGAGACCAATCGACGGCTCGCCGACCGCCTCATCGGGCTCTGCGGGCCTGGACGCGAGG TCGCCGGCGGACAGCTGTTCCGGGATCTTCCTCCCGAGACCGTGGCCGACTTTCTGCGGCTCTTCCAGGCTCATCCCGAT GCAGTGGCGATGCGAGGGGAGGCGATCGCCGACTGGATCATCCAGCGCGCCGCGGAGGGCGAACTGGTGGACTGGTCCGT GCTGCTGGCGTCGGCCCAGCGCGGGACCGAGGTGCGCATCGGGGGTATCTCCACCCGCGTCGTCACCCGCAGCCGGATCA GCAGCGAGGCGATCGGCATCCTCATCGATCCGCGGCACGAAGGCGCCGACCTTCCCGGGGGACCGGACGCCTATGTTCGC GCCTCGGGCAACTATGACGCCCAGGCGATGCGGTCCGCCCGGTCTCCCACCCAGGGCCTGCTGATGGTCTACCCCCTCGA CCCTGAGCCGCTCGGGGTTGAGAACCTCGACGCCGTGATCGGCGTCGCCCTGAGCCTGCCTTACACCTCAGACGGTCAAT CCAGCGCCATCGTCAATCGCGGCGTCGCCTCATGA
Upstream 100 bases:
>100_bases TCGCGTCCGACCCGGTGGCGCGAGAGGCGCTGGTCGCCTTCCTGGAGGATCTCGACCGAGTTGACGCCCAGCAGGCGCTG ATCGACGACGCAGCGGGCGC
Downstream 100 bases:
>100_bases GCGACTGGATCGAAACCTGGCGCGCGCTTCGCGCGAGCCGGCCCGTCGGGGAAGATCAGGTCGCAACGGCGCCGCTCGTG CACGCAGGCGTGGAGACTTC
Product: hypothetical protein
Products: NA
Alternate protein names: Endonuclease Z1 Domain Protein; Endonuclease Z1 Domain; Endonuclease Z1 Domain-Containing Protein; Conserved Hypothethical Protein; Z1 Domain-Containing Protein
Number of amino acids: Translated: 784; Mature: 783
Protein sequence:
>784_residues MTIARVYDLRPAQVSWTDTLGDPPEGAWRRLERRLLGGGRWKPAQVESLASESARVLRHLPDPRQTSAFQGRGLVVGYVQ SGKTANYTAVAARAVDAGYRLVIVLSGIHDALRNQTQVRLEEELVGVDEPGGPRWRLLTTREGDFREPEEDVLADDGAFL IVAKKNVPVLKRLDGWLEAVASRLQGVPVLLIDDEADQASINTRANRAPDPSLDSEGTTAAPSGAGPSATNALIRSMLGR APQAAYVAYTATPFANIFIDPDAVDRDVGEDLFPRDFALQLPRPEGYTGTEELFGVSAQGRDVFRRVPDEDVSALRQATT RRSARPVTVRAEEQLLPNSLTDAILAFCLAGAIREGRPGLQGKPHTMLVHVSVRVEDQTQVRAAIEAQVDLWLEAMRQGH DLTALFVEALETHFRGVSTPLDPQATAQAAISVLRSLDVLELNSVTGENLEYDTRPARHIIAVGGNRLSRGLTLEGLTVS YFLRTASMADTLLQMARWYGFRTGYEDLIRIWTTDGIAQWFTELALVEESLRDSLQALYRAGRRPSEMAIRLRSHSALLL TAKNKAAMAETLTLSWSGEHPQTVILPLHDHTRLETNRRLADRLIGLCGPGREVAGGQLFRDLPPETVADFLRLFQAHPD AVAMRGEAIADWIIQRAAEGELVDWSVLLASAQRGTEVRIGGISTRVVTRSRISSEAIGILIDPRHEGADLPGGPDAYVR ASGNYDAQAMRSARSPTQGLLMVYPLDPEPLGVENLDAVIGVALSLPYTSDGQSSAIVNRGVAS
Sequences:
>Translated_784_residues MTIARVYDLRPAQVSWTDTLGDPPEGAWRRLERRLLGGGRWKPAQVESLASESARVLRHLPDPRQTSAFQGRGLVVGYVQ SGKTANYTAVAARAVDAGYRLVIVLSGIHDALRNQTQVRLEEELVGVDEPGGPRWRLLTTREGDFREPEEDVLADDGAFL IVAKKNVPVLKRLDGWLEAVASRLQGVPVLLIDDEADQASINTRANRAPDPSLDSEGTTAAPSGAGPSATNALIRSMLGR APQAAYVAYTATPFANIFIDPDAVDRDVGEDLFPRDFALQLPRPEGYTGTEELFGVSAQGRDVFRRVPDEDVSALRQATT RRSARPVTVRAEEQLLPNSLTDAILAFCLAGAIREGRPGLQGKPHTMLVHVSVRVEDQTQVRAAIEAQVDLWLEAMRQGH DLTALFVEALETHFRGVSTPLDPQATAQAAISVLRSLDVLELNSVTGENLEYDTRPARHIIAVGGNRLSRGLTLEGLTVS YFLRTASMADTLLQMARWYGFRTGYEDLIRIWTTDGIAQWFTELALVEESLRDSLQALYRAGRRPSEMAIRLRSHSALLL TAKNKAAMAETLTLSWSGEHPQTVILPLHDHTRLETNRRLADRLIGLCGPGREVAGGQLFRDLPPETVADFLRLFQAHPD AVAMRGEAIADWIIQRAAEGELVDWSVLLASAQRGTEVRIGGISTRVVTRSRISSEAIGILIDPRHEGADLPGGPDAYVR ASGNYDAQAMRSARSPTQGLLMVYPLDPEPLGVENLDAVIGVALSLPYTSDGQSSAIVNRGVAS >Mature_783_residues TIARVYDLRPAQVSWTDTLGDPPEGAWRRLERRLLGGGRWKPAQVESLASESARVLRHLPDPRQTSAFQGRGLVVGYVQS GKTANYTAVAARAVDAGYRLVIVLSGIHDALRNQTQVRLEEELVGVDEPGGPRWRLLTTREGDFREPEEDVLADDGAFLI VAKKNVPVLKRLDGWLEAVASRLQGVPVLLIDDEADQASINTRANRAPDPSLDSEGTTAAPSGAGPSATNALIRSMLGRA PQAAYVAYTATPFANIFIDPDAVDRDVGEDLFPRDFALQLPRPEGYTGTEELFGVSAQGRDVFRRVPDEDVSALRQATTR RSARPVTVRAEEQLLPNSLTDAILAFCLAGAIREGRPGLQGKPHTMLVHVSVRVEDQTQVRAAIEAQVDLWLEAMRQGHD LTALFVEALETHFRGVSTPLDPQATAQAAISVLRSLDVLELNSVTGENLEYDTRPARHIIAVGGNRLSRGLTLEGLTVSY FLRTASMADTLLQMARWYGFRTGYEDLIRIWTTDGIAQWFTELALVEESLRDSLQALYRAGRRPSEMAIRLRSHSALLLT AKNKAAMAETLTLSWSGEHPQTVILPLHDHTRLETNRRLADRLIGLCGPGREVAGGQLFRDLPPETVADFLRLFQAHPDA VAMRGEAIADWIIQRAAEGELVDWSVLLASAQRGTEVRIGGISTRVVTRSRISSEAIGILIDPRHEGADLPGGPDAYVRA SGNYDAQAMRSARSPTQGLLMVYPLDPEPLGVENLDAVIGVALSLPYTSDGQSSAIVNRGVAS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 85484; Mature: 85353
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIARVYDLRPAQVSWTDTLGDPPEGAWRRLERRLLGGGRWKPAQVESLASESARVLRHL CCCEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC PDPRQTSAFQGRGLVVGYVQSGKTANYTAVAARAVDAGYRLVIVLSGIHDALRNQTQVRL CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHCCHHHEEE EEELVGVDEPGGPRWRLLTTREGDFREPEEDVLADDGAFLIVAKKNVPVLKRLDGWLEAV HHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH ASRLQGVPVLLIDDEADQASINTRANRAPDPSLDSEGTTAAPSGAGPSATNALIRSMLGR HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC APQAAYVAYTATPFANIFIDPDAVDRDVGEDLFPRDFALQLPRPEGYTGTEELFGVSAQG CCCCEEEEEEECCCEEEEECCCHHCHHCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCC RDVFRRVPDEDVSALRQATTRRSARPVTVRAEEQLLPNSLTDAILAFCLAGAIREGRPGL HHHHHHCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCCC QGKPHTMLVHVSVRVEDQTQVRAAIEAQVDLWLEAMRQGHDLTALFVEALETHFRGVSTP CCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC LDPQATAQAAISVLRSLDVLELNSVTGENLEYDTRPARHIIAVGGNRLSRGLTLEGLTVS CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHCCCCEECCCHHH YFLRTASMADTLLQMARWYGFRTGYEDLIRIWTTDGIAQWFTELALVEESLRDSLQALYR HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AGRRPSEMAIRLRSHSALLLTAKNKAAMAETLTLSWSGEHPQTVILPLHDHTRLETNRRL CCCCCHHHEEEEECCCEEEEEECCCHHEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHH ADRLIGLCGPGREVAGGQLFRDLPPETVADFLRLFQAHPDAVAMRGEAIADWIIQRAAEG HHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCC ELVDWSVLLASAQRGTEVRIGGISTRVVTRSRISSEAIGILIDPRHEGADLPGGPDAYVR CEEEHHHHHHHCCCCCEEEECCCEEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEE ASGNYDAQAMRSARSPTQGLLMVYPLDPEPLGVENLDAVIGVALSLPYTSDGQSSAIVNR ECCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHC GVAS CCCC >Mature Secondary Structure TIARVYDLRPAQVSWTDTLGDPPEGAWRRLERRLLGGGRWKPAQVESLASESARVLRHL CCEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC PDPRQTSAFQGRGLVVGYVQSGKTANYTAVAARAVDAGYRLVIVLSGIHDALRNQTQVRL CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHCCHHHEEE EEELVGVDEPGGPRWRLLTTREGDFREPEEDVLADDGAFLIVAKKNVPVLKRLDGWLEAV HHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHH ASRLQGVPVLLIDDEADQASINTRANRAPDPSLDSEGTTAAPSGAGPSATNALIRSMLGR HHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC APQAAYVAYTATPFANIFIDPDAVDRDVGEDLFPRDFALQLPRPEGYTGTEELFGVSAQG CCCCEEEEEEECCCEEEEECCCHHCHHCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCC RDVFRRVPDEDVSALRQATTRRSARPVTVRAEEQLLPNSLTDAILAFCLAGAIREGRPGL HHHHHHCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCCCC QGKPHTMLVHVSVRVEDQTQVRAAIEAQVDLWLEAMRQGHDLTALFVEALETHFRGVSTP CCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC LDPQATAQAAISVLRSLDVLELNSVTGENLEYDTRPARHIIAVGGNRLSRGLTLEGLTVS CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEEECCCHHCCCCEECCCHHH YFLRTASMADTLLQMARWYGFRTGYEDLIRIWTTDGIAQWFTELALVEESLRDSLQALYR HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH AGRRPSEMAIRLRSHSALLLTAKNKAAMAETLTLSWSGEHPQTVILPLHDHTRLETNRRL CCCCCHHHEEEEECCCEEEEEECCCHHEEEEEEEEECCCCCCEEEEECCCCCCHHHHHHH ADRLIGLCGPGREVAGGQLFRDLPPETVADFLRLFQAHPDAVAMRGEAIADWIIQRAAEG HHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHCCCC ELVDWSVLLASAQRGTEVRIGGISTRVVTRSRISSEAIGILIDPRHEGADLPGGPDAYVR CEEEHHHHHHHCCCCCEEEECCCEEEEHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEE ASGNYDAQAMRSARSPTQGLLMVYPLDPEPLGVENLDAVIGVALSLPYTSDGQSSAIVNR ECCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHEECCCCCCCCCHHHHHC GVAS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA