| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is yuxL [H]
Identifier: 197105858
GI number: 197105858
Start: 2729386
End: 2731962
Strand: Direct
Name: yuxL [H]
Synonym: PHZ_c2397
Alternate gene names: 197105858
Gene position: 2729386-2731962 (Clockwise)
Preceding gene: 197105857
Following gene: 197105871
Centisome position: 68.3
GC content: 73.81
Gene sequence:
>2577_bases ATGCGGGTCCTGTCCGTTCGGCGGCCGCTCGCCGCCGCGGCGGCGGCCGGCTGCCTGCTGCTGTCCGCCGCCGGCCATGC GCGCCCGGTCACGATCGAGGATGCGCTGCAGTCCGGGACGATCGCCAACACCGCCATCGATCCCACGGAACGATGGGCGG TGATCGAGTACGCCCGGCCCTACGCCTCGGCGCCGCGGTTCGACTTCGATCTCCTGCAGCCGATGATGACCACCGAGCTC AGGGTGGCGGACCTTGAGCGCCCTGGCCCCGCGGCGCTCCTGTTTCCGCCCGAGCCTGGAGCCGGCTACGCCGCCGGTCC CTTCTCGCCGGACGGCCGCCGCATCGCCGTCTATCGGCTGACCGACGCCGCCTTCAGCCTGGGCGTCGTCGATCTCGCCG CCCGCACAGTCCGCTGGTTCGACGTCGCGCCGGACATAAGCTGGGAGGGTCGGGCCGTGGGCTGGGCCTCGCCGAGGCGG CTGCTGGTCATCACGCCGCCCCCGGGAAGCCTGCCGCATTACGTCCGTATGCAGCGCGCCTGGCGCAGCCTGCCGCCCCG CTGGGAGAGCGTGGCTTTGGGCGGCGCCGCCCCCGCCGTGTGGCGCGGCGGCCGCGCCCTCAAGGACCAGCCCCGAACCC AGCCTGGACGTCTGCTGCGCCTCGACGTGGAGACGGGCGCCGCCGAGGTTCTCGCGACGGGCCGCTTCGTCGATCTCGAG GTCTCCGCGTCCGGCAAATACGCCGCCGTCCTCGAGCGCGGCGAGGACGTCCGCCTCCAGGCGGACGCACCGGTCCACGG GGACATGGGGGTCGCCACCTTCCGCAAGCGGCTGCGGCTCGTGCCGGTCTCCGGCGGCGCCGCCGCCTCCCCCTGCCCAG GCTGCGACCTCCTGCAGGGCCTGCTCGTCTGGGCCCCGAACCAGGACCGTCTCCTCGCCTACGCGCGTGACGACGGTCAG GCCTGGCGGCAGGGCCGGCTGATCGATGTGGACGCCAGGACCGGGCGCCTCGCCAGACTGCCGGCCGGCTTTCGTCCGGC GGTGGTCGGGCGTCCGGAGATCGTCGCCGCCGGCTGGATGGGGGCCTCGCCCGTCGTCTACGGCCGCACCGACGGCGCGA CTCGCGATGACTGGTGGCGGCTCGCTGGCCCACGGCCGGTCAATCTCACCGGCAGCCTGCCGCAGGCGCCGATGGCCGGC GTCAGCCTCGCTGGCGAGCGTCTCACCGTCGCGACGCCCGCCGGCGGCTGGAGCCTCGACGTCGACGGCCAGGCCCGGCG CCTCGAGCCCCGCGGCGTCGCGCCACTGGCCCCCTGGAGCCGCGGCCTGCGCCGGCGCGCCGGCCACGAGCTCGGTCGAA GGGCTCTGCCGGTCCGCGTGCGGGAGGCGGCCGGCGACCGGCTCCACGACCTGGCGGCGGCGCGCGCCGTCGATCTGCCG CTGCCCGACGGCGCCGAGCTCTTCGCCTACGCCCCGCGACGGGGCGCCGCCCTGGTCCGCACGCTGAGCCCGGGCGGCCG ACAGGCGCTCCTCTGGATCACCGCGGATCGACCTCCCGTTTCGGTGCTGGCCGCCAATCCGCGGCTGTCGGACGTGGAGC CGCCGCGCGCGATTCCCGTTCATCACACGGCTCCTGATGGCCGTCCGCTCACCAGCTGGCTGCTTGCGCCGAAGGCCGCG TCAGGCGCTCCAGCGCCGCCGCTGATCGTCGTACCCTACCTCGGGCAGATCCATAGCCGCCGGCCGCAGGTCCGGATCGA GGGGACCGTCCGCGATCAGTGGGAAGCGCTGCATCTGACGGGCCAGGGCTATGCCGTGCTCCTGCCGTCGCTCCCCCTGC CCGCCGACGGCAGGGGGCCTGGCGAAGGCCTTGCCGATCGGGTCCTCGCCATCGTCGACGCCGCCGCGCGCCAGCCGGAC ACCGGATCCCTGTTCGATGACGCGCAGCTCGGGCTCCTTGGCGTCAGCTTCGGCGCCCACAACGTCCTGGCGATCATCAC CCAGACTGACCGGTTCAAGGTCGCCGTGGCCGCGCACGGCCCCAGCAGCCTGATCACCAAATGGGGCGAGTTCGGGCTCG GCCGCGTCTTTCCGGAAGCGGAGATCCCCAGCGCCTGGTCCATCGGCTGGGCGGAGACCCTGCAGGGCCTGATGGGCGCC CCGCCCTGGGAGGCGCCGGATCGCTACGTTGCGAACAGCCCGCTCATGCACGCGGGCCGCATCCGGACGCCCCTGCTGAT GGTCCAGGGCGAGTTCGATTCCATGTCCGCCGCAGAAGGCGAGCGGATGTTTTCCGCCCTCTTCCGCCAGGACAAGACGG TGGAGCTCGCCATCTACGGCGGTGAGGGCCACGTCTTCGCAAGCCCCGGGACGATCCGCGACTACTACGGACGGGTGTTC GCCTGGCTGGACACCTGGCTTCAGGCCGACCACCGCCGGACCCAGGCCTCCAGCGCCGCGGCGCTGAGCAGGCCGATCCC GTCTCCACGCCAGATCAGCCTGTCCGGGTGGAGCGCCGCGTCCATGGCTGCCCGGTCCAGCACCCCTTCGGCCGCCAGCC GTCCGTCCAGCAGATAG
Upstream 100 bases:
>100_bases CCGCCCTTCTACGACAGCCCTCTGGGCTTCGCCTACGACCCCACCAGCGGCGATCCGGTGGGCCGTTTCGTCGCCCTGCA GCTCACCCGCAGCTGGTGAC
Downstream 100 bases:
>100_bases GCACGCAGGAAGCCCAGGCTCTCGCAGACCTGTCGGGCATAGTAGCTGGTCAGCATGCCCTTGGACCGCCGCGCCACGAT CTCAGGCGGGAGGCGGTCCG
Product: putative dipeptidyl aminopeptidase/acylaminoacyl-peptidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 858; Mature: 858
Protein sequence:
>858_residues MRVLSVRRPLAAAAAAGCLLLSAAGHARPVTIEDALQSGTIANTAIDPTERWAVIEYARPYASAPRFDFDLLQPMMTTEL RVADLERPGPAALLFPPEPGAGYAAGPFSPDGRRIAVYRLTDAAFSLGVVDLAARTVRWFDVAPDISWEGRAVGWASPRR LLVITPPPGSLPHYVRMQRAWRSLPPRWESVALGGAAPAVWRGGRALKDQPRTQPGRLLRLDVETGAAEVLATGRFVDLE VSASGKYAAVLERGEDVRLQADAPVHGDMGVATFRKRLRLVPVSGGAAASPCPGCDLLQGLLVWAPNQDRLLAYARDDGQ AWRQGRLIDVDARTGRLARLPAGFRPAVVGRPEIVAAGWMGASPVVYGRTDGATRDDWWRLAGPRPVNLTGSLPQAPMAG VSLAGERLTVATPAGGWSLDVDGQARRLEPRGVAPLAPWSRGLRRRAGHELGRRALPVRVREAAGDRLHDLAAARAVDLP LPDGAELFAYAPRRGAALVRTLSPGGRQALLWITADRPPVSVLAANPRLSDVEPPRAIPVHHTAPDGRPLTSWLLAPKAA SGAPAPPLIVVPYLGQIHSRRPQVRIEGTVRDQWEALHLTGQGYAVLLPSLPLPADGRGPGEGLADRVLAIVDAAARQPD TGSLFDDAQLGLLGVSFGAHNVLAIITQTDRFKVAVAAHGPSSLITKWGEFGLGRVFPEAEIPSAWSIGWAETLQGLMGA PPWEAPDRYVANSPLMHAGRIRTPLLMVQGEFDSMSAAEGERMFSALFRQDKTVELAIYGGEGHVFASPGTIRDYYGRVF AWLDTWLQADHRRTQASSAAALSRPIPSPRQISLSGWSAASMAARSSTPSAASRPSSR
Sequences:
>Translated_858_residues MRVLSVRRPLAAAAAAGCLLLSAAGHARPVTIEDALQSGTIANTAIDPTERWAVIEYARPYASAPRFDFDLLQPMMTTEL RVADLERPGPAALLFPPEPGAGYAAGPFSPDGRRIAVYRLTDAAFSLGVVDLAARTVRWFDVAPDISWEGRAVGWASPRR LLVITPPPGSLPHYVRMQRAWRSLPPRWESVALGGAAPAVWRGGRALKDQPRTQPGRLLRLDVETGAAEVLATGRFVDLE VSASGKYAAVLERGEDVRLQADAPVHGDMGVATFRKRLRLVPVSGGAAASPCPGCDLLQGLLVWAPNQDRLLAYARDDGQ AWRQGRLIDVDARTGRLARLPAGFRPAVVGRPEIVAAGWMGASPVVYGRTDGATRDDWWRLAGPRPVNLTGSLPQAPMAG VSLAGERLTVATPAGGWSLDVDGQARRLEPRGVAPLAPWSRGLRRRAGHELGRRALPVRVREAAGDRLHDLAAARAVDLP LPDGAELFAYAPRRGAALVRTLSPGGRQALLWITADRPPVSVLAANPRLSDVEPPRAIPVHHTAPDGRPLTSWLLAPKAA SGAPAPPLIVVPYLGQIHSRRPQVRIEGTVRDQWEALHLTGQGYAVLLPSLPLPADGRGPGEGLADRVLAIVDAAARQPD TGSLFDDAQLGLLGVSFGAHNVLAIITQTDRFKVAVAAHGPSSLITKWGEFGLGRVFPEAEIPSAWSIGWAETLQGLMGA PPWEAPDRYVANSPLMHAGRIRTPLLMVQGEFDSMSAAEGERMFSALFRQDKTVELAIYGGEGHVFASPGTIRDYYGRVF AWLDTWLQADHRRTQASSAAALSRPIPSPRQISLSGWSAASMAARSSTPSAASRPSSR >Mature_858_residues MRVLSVRRPLAAAAAAGCLLLSAAGHARPVTIEDALQSGTIANTAIDPTERWAVIEYARPYASAPRFDFDLLQPMMTTEL RVADLERPGPAALLFPPEPGAGYAAGPFSPDGRRIAVYRLTDAAFSLGVVDLAARTVRWFDVAPDISWEGRAVGWASPRR LLVITPPPGSLPHYVRMQRAWRSLPPRWESVALGGAAPAVWRGGRALKDQPRTQPGRLLRLDVETGAAEVLATGRFVDLE VSASGKYAAVLERGEDVRLQADAPVHGDMGVATFRKRLRLVPVSGGAAASPCPGCDLLQGLLVWAPNQDRLLAYARDDGQ AWRQGRLIDVDARTGRLARLPAGFRPAVVGRPEIVAAGWMGASPVVYGRTDGATRDDWWRLAGPRPVNLTGSLPQAPMAG VSLAGERLTVATPAGGWSLDVDGQARRLEPRGVAPLAPWSRGLRRRAGHELGRRALPVRVREAAGDRLHDLAAARAVDLP LPDGAELFAYAPRRGAALVRTLSPGGRQALLWITADRPPVSVLAANPRLSDVEPPRAIPVHHTAPDGRPLTSWLLAPKAA SGAPAPPLIVVPYLGQIHSRRPQVRIEGTVRDQWEALHLTGQGYAVLLPSLPLPADGRGPGEGLADRVLAIVDAAARQPD TGSLFDDAQLGLLGVSFGAHNVLAIITQTDRFKVAVAAHGPSSLITKWGEFGLGRVFPEAEIPSAWSIGWAETLQGLMGA PPWEAPDRYVANSPLMHAGRIRTPLLMVQGEFDSMSAAEGERMFSALFRQDKTVELAIYGGEGHVFASPGTIRDYYGRVF AWLDTWLQADHRRTQASSAAALSRPIPSPRQISLSGWSAASMAARSSTPSAASRPSSR
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9B family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR011659 - InterPro: IPR001375 [H]
Pfam domain/function: PF07676 PD40; PF00326 Peptidase_S9 [H]
EC number: NA
Molecular weight: Translated: 91785; Mature: 91785
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLSVRRPLAAAAAAGCLLLSAAGHARPVTIEDALQSGTIANTAIDPTERWAVIEYARP CCEECCCCCHHHHHHHHHHEEECCCCCCCEEHHHHHHCCCEECCCCCCCCCEEEEEECCC YASAPRFDFDLLQPMMTTELRVADLERPGPAALLFPPEPGAGYAAGPFSPDGRRIAVYRL CCCCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEE TDAAFSLGVVDLAARTVRWFDVAPDISWEGRAVGWASPRRLLVITPPPGSLPHYVRMQRA ECHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHH WRSLPPRWESVALGGAAPAVWRGGRALKDQPRTQPGRLLRLDVETGAAEVLATGRFVDLE HHCCCCCHHEEEECCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHEECCCEEEEE VSASGKYAAVLERGEDVRLQADAPVHGDMGVATFRKRLRLVPVSGGAAASPCPGCDLLQG ECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCCCCCCCHHHHCC LLVWAPNQDRLLAYARDDGQAWRQGRLIDVDARTGRLARLPAGFRPAVVGRPEIVAAGWM CEEECCCCCCEEEEECCCCHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCEEEECCC GASPVVYGRTDGATRDDWWRLAGPRPVNLTGSLPQAPMAGVSLAGERLTVATPAGGWSLD CCCCEEEECCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCEECCCEEEEECCCCCEEEE VDGQARRLEPRGVAPLAPWSRGLRRRAGHELGRRALPVRVREAAGDRLHDLAAARAVDLP CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHEECCC LPDGAELFAYAPRRGAALVRTLSPGGRQALLWITADRPPVSVLAANPRLSDVEPPRAIPV CCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCEECC HHTAPDGRPLTSWLLAPKAASGAPAPPLIVVPYLGQIHSRRPQVRIEGTVRDQWEALHLT CCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCHHHHHCCCCCEEEEEEECCCEEEEEEE GQGYAVLLPSLPLPADGRGPGEGLADRVLAIVDAAARQPDTGSLFDDAQLGLLGVSFGAH CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC NVLAIITQTDRFKVAVAAHGPSSLITKWGEFGLGRVFPEAEIPSAWSIGWAETLQGLMGA CEEEEEEECCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC PPWEAPDRYVANSPLMHAGRIRTPLLMVQGEFDSMSAAEGERMFSALFRQDKTVELAIYG CCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEC GEGHVFASPGTIRDYYGRVFAWLDTWLQADHRRTQASSAAALSRPIPSPRQISLSGWSAA CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHH SMAARSSTPSAASRPSSR HHHHCCCCCCCCCCCCCC >Mature Secondary Structure MRVLSVRRPLAAAAAAGCLLLSAAGHARPVTIEDALQSGTIANTAIDPTERWAVIEYARP CCEECCCCCHHHHHHHHHHEEECCCCCCCEEHHHHHHCCCEECCCCCCCCCEEEEEECCC YASAPRFDFDLLQPMMTTELRVADLERPGPAALLFPPEPGAGYAAGPFSPDGRRIAVYRL CCCCCCCCHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEE TDAAFSLGVVDLAARTVRWFDVAPDISWEGRAVGWASPRRLLVITPPPGSLPHYVRMQRA ECHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEECCCCCEEEEEECCCCCCHHHHHHHHH WRSLPPRWESVALGGAAPAVWRGGRALKDQPRTQPGRLLRLDVETGAAEVLATGRFVDLE HHCCCCCHHEEEECCCCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHEECCCEEEEE VSASGKYAAVLERGEDVRLQADAPVHGDMGVATFRKRLRLVPVSGGAAASPCPGCDLLQG ECCCCCEEEEEECCCCEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCCCCCCCHHHHCC LLVWAPNQDRLLAYARDDGQAWRQGRLIDVDARTGRLARLPAGFRPAVVGRPEIVAAGWM CEEECCCCCCEEEEECCCCHHHHCCCEEEEECCCCCEEECCCCCCCCCCCCCCEEEECCC GASPVVYGRTDGATRDDWWRLAGPRPVNLTGSLPQAPMAGVSLAGERLTVATPAGGWSLD CCCCEEEECCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCEECCCEEEEECCCCCEEEE VDGQARRLEPRGVAPLAPWSRGLRRRAGHELGRRALPVRVREAAGDRLHDLAAARAVDLP CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEHHHCCHHHHHHHHHHEECCC LPDGAELFAYAPRRGAALVRTLSPGGRQALLWITADRPPVSVLAANPRLSDVEPPRAIPV CCCCCCEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEECCCCCCCCCCCCEECC HHTAPDGRPLTSWLLAPKAASGAPAPPLIVVPYLGQIHSRRPQVRIEGTVRDQWEALHLT CCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECCHHHHHCCCCCEEEEEEECCCEEEEEEE GQGYAVLLPSLPLPADGRGPGEGLADRVLAIVDAAARQPDTGSLFDDAQLGLLGVSFGAH CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCC NVLAIITQTDRFKVAVAAHGPSSLITKWGEFGLGRVFPEAEIPSAWSIGWAETLQGLMGA CEEEEEEECCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC PPWEAPDRYVANSPLMHAGRIRTPLLMVQGEFDSMSAAEGERMFSALFRQDKTVELAIYG CCCCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEC GEGHVFASPGTIRDYYGRVFAWLDTWLQADHRRTQASSAAALSRPIPSPRQISLSGWSAA CCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHH SMAARSSTPSAASRPSSR HHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 3098560 [H]