| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is pip [H]
Identifier: 197105740
GI number: 197105740
Start: 2580482
End: 2581474
Strand: Direct
Name: pip [H]
Synonym: PHZ_c2278
Alternate gene names: 197105740
Gene position: 2580482-2581474 (Clockwise)
Preceding gene: 197105739
Following gene: 197105741
Centisome position: 64.57
GC content: 70.59
Gene sequence:
>993_bases ATGGAACGCAACACGCCGGCGCCCGCCGTATCGTCCCCCCAGCACCGGCGCGGCCTGTTCGCCGACAACGAGCCCTTCGC CTCGGGCTGGCTCGCCACCGGCGGCCCGCACGAGATCTTCTACGAGGAGTGCGGCAATCCGAACGGCAAGCCGTGTGTGA TCCTGCACGGCGGCCCGGGCGGGGCGATCAACCCCACCATGCGGCGGTTCTTCGACCCGGCGAAATGGCGCATGGCGCTG TTCGACCAGCGCGGCTGCGGCCGCAGCCGGCCGAACGCCAGCCTGGAGGACAACACCACCTGGGCCCTGATCGAGGACAT CGAGCGGCTGCGCGAGCACCTGGGCGTCGAGAAGTGGTGCGTGTTCGGCGGCTCGTGGGGCTCCACCCTGGCGCTCGCCT ACGCCATCAAGCACCCGGAACGGGTCGAGAGCCTGGTGCTGCGCGGCATCTTCCTGCTGACCGAGCGCGAGCTGCGCTGG TTCTACCAGGACGGCGCCTCGATGCTGTTCCCCGACGCCTGGCAGCGGTTCTGCGCGCCGATCCCCGAGGCCGAACGCGG CGACATGATCGCCGCCTACCACAAGCGCCTCACCCACCCCGACCGCGGCGTGCAGGCCGAGGCCGCGGCCGCCTGGAGCC AGTGGGAGGGCGACACCATCTCGATCCGGGGCCCCGAGGCGCGGCCCTCCAAGTTCAACGAGATCGACTTCGCCATCGCC TTCGCGCGGATCGAGTGCCACTTCTTCGCCAACGGCGGATTCTTCCCCTCGAAGAACTGGATCCTCGAGAACCTCGACCG GATGCGCGGCATCCCCGGCTGGATCGTCCAGGGCCGCTTCGACGTGGTCACGCCCATGGAGAGCGCCTGGCGGCTGAAGC AGGGCTGGCCCGAGGCCCGCTTCGAGGTCGTGTGGGACGCCGGCCACGCCTCGACCGAGCCCGGGATCGTCGACGCCCTG GTCCGGGCCACCGACCAGGCGCTGAAGCTCTAG
Upstream 100 bases:
>100_bases AAGGGCTCGGGCCACTGGACACAGCAGGAGAAGCCGGGCGAGGTGAACGTGCTGATCCTCGACTGGCTGGACCGGCGCTT CCCGAAGTAGACTGAGGCCC
Downstream 100 bases:
>100_bases GGACCCGCATGAGCCGCGCCGAGATCGTCCGCGCCTATCTGAAGGCCATCGAGGACCGCGGCGACTCCCTTGGCTGCTTC GCCGAGGACGCAGTGCAGGA
Product: proline iminopeptidase
Products: NA
Alternate protein names: PIP; Prolyl aminopeptidase; PAP [H]
Number of amino acids: Translated: 330; Mature: 330
Protein sequence:
>330_residues MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPGGAINPTMRRFFDPAKWRMAL FDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWCVFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRW FYQDGASMLFPDAWQRFCAPIPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEARFEVVWDAGHASTEPGIVDAL VRATDQALKL
Sequences:
>Translated_330_residues MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPGGAINPTMRRFFDPAKWRMAL FDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWCVFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRW FYQDGASMLFPDAWQRFCAPIPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEARFEVVWDAGHASTEPGIVDAL VRATDQALKL >Mature_330_residues MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPGGAINPTMRRFFDPAKWRMAL FDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWCVFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRW FYQDGASMLFPDAWQRFCAPIPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEARFEVVWDAGHASTEPGIVDAL VRATDQALKL
Specific function: Specifically catalyzes the removal of N-terminal proline residues from peptides [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S33 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR005944 - InterPro: IPR002410 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.4.11.5 [H]
Molecular weight: Translated: 37177; Mature: 37177
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPG CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCC GAINPTMRRFFDPAKWRMALFDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWC CCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE VFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRWFYQDGASMLFPDAWQRFCAP EECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC IPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEE FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEAR EEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEECCCHHHHHHHCCCCCCE FEVVWDAGHASTEPGIVDALVRATDQALKL EEEEEECCCCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPG CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCC GAINPTMRRFFDPAKWRMALFDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWC CCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE VFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRWFYQDGASMLFPDAWQRFCAP EECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC IPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEE FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEAR EEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEECCCHHHHHHHCCCCCCE FEVVWDAGHASTEPGIVDALVRATDQALKL EEEEEECCCCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA