Definition Phenylobacterium zucineum HLK1, complete genome.
Accession NC_011144
Length 3,996,255

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The map label for this gene is pip [H]

Identifier: 197105740

GI number: 197105740

Start: 2580482

End: 2581474

Strand: Direct

Name: pip [H]

Synonym: PHZ_c2278

Alternate gene names: 197105740

Gene position: 2580482-2581474 (Clockwise)

Preceding gene: 197105739

Following gene: 197105741

Centisome position: 64.57

GC content: 70.59

Gene sequence:

>993_bases
ATGGAACGCAACACGCCGGCGCCCGCCGTATCGTCCCCCCAGCACCGGCGCGGCCTGTTCGCCGACAACGAGCCCTTCGC
CTCGGGCTGGCTCGCCACCGGCGGCCCGCACGAGATCTTCTACGAGGAGTGCGGCAATCCGAACGGCAAGCCGTGTGTGA
TCCTGCACGGCGGCCCGGGCGGGGCGATCAACCCCACCATGCGGCGGTTCTTCGACCCGGCGAAATGGCGCATGGCGCTG
TTCGACCAGCGCGGCTGCGGCCGCAGCCGGCCGAACGCCAGCCTGGAGGACAACACCACCTGGGCCCTGATCGAGGACAT
CGAGCGGCTGCGCGAGCACCTGGGCGTCGAGAAGTGGTGCGTGTTCGGCGGCTCGTGGGGCTCCACCCTGGCGCTCGCCT
ACGCCATCAAGCACCCGGAACGGGTCGAGAGCCTGGTGCTGCGCGGCATCTTCCTGCTGACCGAGCGCGAGCTGCGCTGG
TTCTACCAGGACGGCGCCTCGATGCTGTTCCCCGACGCCTGGCAGCGGTTCTGCGCGCCGATCCCCGAGGCCGAACGCGG
CGACATGATCGCCGCCTACCACAAGCGCCTCACCCACCCCGACCGCGGCGTGCAGGCCGAGGCCGCGGCCGCCTGGAGCC
AGTGGGAGGGCGACACCATCTCGATCCGGGGCCCCGAGGCGCGGCCCTCCAAGTTCAACGAGATCGACTTCGCCATCGCC
TTCGCGCGGATCGAGTGCCACTTCTTCGCCAACGGCGGATTCTTCCCCTCGAAGAACTGGATCCTCGAGAACCTCGACCG
GATGCGCGGCATCCCCGGCTGGATCGTCCAGGGCCGCTTCGACGTGGTCACGCCCATGGAGAGCGCCTGGCGGCTGAAGC
AGGGCTGGCCCGAGGCCCGCTTCGAGGTCGTGTGGGACGCCGGCCACGCCTCGACCGAGCCCGGGATCGTCGACGCCCTG
GTCCGGGCCACCGACCAGGCGCTGAAGCTCTAG

Upstream 100 bases:

>100_bases
AAGGGCTCGGGCCACTGGACACAGCAGGAGAAGCCGGGCGAGGTGAACGTGCTGATCCTCGACTGGCTGGACCGGCGCTT
CCCGAAGTAGACTGAGGCCC

Downstream 100 bases:

>100_bases
GGACCCGCATGAGCCGCGCCGAGATCGTCCGCGCCTATCTGAAGGCCATCGAGGACCGCGGCGACTCCCTTGGCTGCTTC
GCCGAGGACGCAGTGCAGGA

Product: proline iminopeptidase

Products: NA

Alternate protein names: PIP; Prolyl aminopeptidase; PAP [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPGGAINPTMRRFFDPAKWRMAL
FDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWCVFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRW
FYQDGASMLFPDAWQRFCAPIPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA
FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEARFEVVWDAGHASTEPGIVDAL
VRATDQALKL

Sequences:

>Translated_330_residues
MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPGGAINPTMRRFFDPAKWRMAL
FDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWCVFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRW
FYQDGASMLFPDAWQRFCAPIPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA
FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEARFEVVWDAGHASTEPGIVDAL
VRATDQALKL
>Mature_330_residues
MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPGGAINPTMRRFFDPAKWRMAL
FDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWCVFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRW
FYQDGASMLFPDAWQRFCAPIPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA
FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEARFEVVWDAGHASTEPGIVDAL
VRATDQALKL

Specific function: Specifically catalyzes the removal of N-terminal proline residues from peptides [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S33 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR005944
- InterPro:   IPR002410 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.4.11.5 [H]

Molecular weight: Translated: 37177; Mature: 37177

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPG
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCC
GAINPTMRRFFDPAKWRMALFDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWC
CCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
VFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRWFYQDGASMLFPDAWQRFCAP
EECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
IPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA
CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEE
FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEAR
EEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEECCCHHHHHHHCCCCCCE
FEVVWDAGHASTEPGIVDALVRATDQALKL
EEEEEECCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MERNTPAPAVSSPQHRRGLFADNEPFASGWLATGGPHEIFYEECGNPNGKPCVILHGGPG
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCC
GAINPTMRRFFDPAKWRMALFDQRGCGRSRPNASLEDNTTWALIEDIERLREHLGVEKWC
CCCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEE
VFGGSWGSTLALAYAIKHPERVESLVLRGIFLLTERELRWFYQDGASMLFPDAWQRFCAP
EECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCC
IPEAERGDMIAAYHKRLTHPDRGVQAEAAAAWSQWEGDTISIRGPEARPSKFNEIDFAIA
CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEE
FARIECHFFANGGFFPSKNWILENLDRMRGIPGWIVQGRFDVVTPMESAWRLKQGWPEAR
EEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEECCCEEEECCCHHHHHHHCCCCCCE
FEVVWDAGHASTEPGIVDALVRATDQALKL
EEEEEECCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA