| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is eph [H]
Identifier: 197105739
GI number: 197105739
Start: 2579512
End: 2580471
Strand: Direct
Name: eph [H]
Synonym: PHZ_c2277
Alternate gene names: 197105739
Gene position: 2579512-2580471 (Clockwise)
Preceding gene: 197105737
Following gene: 197105740
Centisome position: 64.55
GC content: 70.0
Gene sequence:
>960_bases ATGCCTGAGCCGAACCGCGTTCGGGTGAACGGGGTGGAGATCGGCTACTACGAAGCCGGCCCGCGGCAAGGCGTTCCCGT CGTCCTGTGCCACGGATTTCCCGAGCTGGCCTTCTCGTGGCGGCACCAGATCAAGGCCCTGGCCGCCGCCGGCCGCTGGG TGATCGCCCCGGACCAGCGCGGCTATGGGCTGTCGTCCAAGCCCGACGCCGTCCCCGACTACGACATGGCGCACCTGACG GGCGACCTCGTGGGGCTGCTGGACCACCTGGGCGTGGAGAAGGCGATCTTCTGCGGCCACGACTGGGGCGGCATCGTCGT GTGGCAGATGCCGCTGATGCACCCGGAGCGGGTGGCGGGCGTGATCGGCCTCAACACCCCGTTCCTGCCGCGCGCGCCAG CCGATCCCATCGCCATCTTCCGGCACAGGTTCGGCCCCGACATGTACATCGTCTGGTTCCAGACCCCGGACGAGCCCGAG GCGGTGCTGGGCGAGGACGTCGCCAAGACCATGCGCTTCTTCATGCGCCGGCCCTCGGCCCTGCGCACGGCCGCGGCCCA GCCGGAGGGCGGCTCGTCGTTCGCCTTCCGCGACCTGCTGCGGGCCTGGGATGGGGCGGACGGCGGCGACCAGCTGCTCA GCCCCGACGAACTCGCGGTCTTTGTCGAGACGTTCGAGGCCGGCGGCTTCTTCGGCCCGGTGAGCTGGTATCGCAACTTC ACCCGGAACTGGGAGCGGGCCGAGGGACTTCCGGGCAGGGTCGACGGCCTGCCCTGCCTGATGATCACGGCCGAGCTCGA TGCCGTGCTCACCCCCGAGATGGCCGAGCCGATGAAGGGCCTGGTCGGCGACCTGGAGACGCACATGGTGAAGGGCTCGG GCCACTGGACACAGCAGGAGAAGCCGGGCGAGGTGAACGTGCTGATCCTCGACTGGCTGGACCGGCGCTTCCCGAAGTAG
Upstream 100 bases:
>100_bases CCTACTGGCGCCGCCCGCTTCCGGGAAAGCGGTTTTGCGGCGATGCTGGCCGCAACGCCGAAAATGAGGGGGAAAAGCCG TGTCTGCGCTCGAAACCATG
Downstream 100 bases:
>100_bases ACTGAGGCCCATGGAACGCAACACGCCGGCGCCCGCCGTATCGTCCCCCCAGCACCGGCGCGGCCTGTTCGCCGACAACG AGCCCTTCGCCTCGGGCTGG
Product: epoxide hydrolase
Products: glycol
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MPEPNRVRVNGVEIGYYEAGPRQGVPVVLCHGFPELAFSWRHQIKALAAAGRWVIAPDQRGYGLSSKPDAVPDYDMAHLT GDLVGLLDHLGVEKAIFCGHDWGGIVVWQMPLMHPERVAGVIGLNTPFLPRAPADPIAIFRHRFGPDMYIVWFQTPDEPE AVLGEDVAKTMRFFMRRPSALRTAAAQPEGGSSFAFRDLLRAWDGADGGDQLLSPDELAVFVETFEAGGFFGPVSWYRNF TRNWERAEGLPGRVDGLPCLMITAELDAVLTPEMAEPMKGLVGDLETHMVKGSGHWTQQEKPGEVNVLILDWLDRRFPK
Sequences:
>Translated_319_residues MPEPNRVRVNGVEIGYYEAGPRQGVPVVLCHGFPELAFSWRHQIKALAAAGRWVIAPDQRGYGLSSKPDAVPDYDMAHLT GDLVGLLDHLGVEKAIFCGHDWGGIVVWQMPLMHPERVAGVIGLNTPFLPRAPADPIAIFRHRFGPDMYIVWFQTPDEPE AVLGEDVAKTMRFFMRRPSALRTAAAQPEGGSSFAFRDLLRAWDGADGGDQLLSPDELAVFVETFEAGGFFGPVSWYRNF TRNWERAEGLPGRVDGLPCLMITAELDAVLTPEMAEPMKGLVGDLETHMVKGSGHWTQQEKPGEVNVLILDWLDRRFPK >Mature_318_residues PEPNRVRVNGVEIGYYEAGPRQGVPVVLCHGFPELAFSWRHQIKALAAAGRWVIAPDQRGYGLSSKPDAVPDYDMAHLTG DLVGLLDHLGVEKAIFCGHDWGGIVVWQMPLMHPERVAGVIGLNTPFLPRAPADPIAIFRHRFGPDMYIVWFQTPDEPEA VLGEDVAKTMRFFMRRPSALRTAAAQPEGGSSFAFRDLLRAWDGADGGDQLLSPDELAVFVETFEAGGFFGPVSWYRNFT RNWERAEGLPGRVDGLPCLMITAELDAVLTPEMAEPMKGLVGDLETHMVKGSGHWTQQEKPGEVNVLILDWLDRRFPK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]
Homologues:
Organism=Homo sapiens, GI27597073, Length=312, Percent_Identity=40.3846153846154, Blast_Score=224, Evalue=9e-59, Organism=Homo sapiens, GI218777837, Length=314, Percent_Identity=28.6624203821656, Blast_Score=128, Evalue=5e-30, Organism=Homo sapiens, GI218777840, Length=311, Percent_Identity=27.3311897106109, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI13376164, Length=311, Percent_Identity=27.3311897106109, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17554012, Length=309, Percent_Identity=28.4789644012945, Blast_Score=134, Evalue=6e-32, Organism=Caenorhabditis elegans, GI17562298, Length=310, Percent_Identity=25.8064516129032, Blast_Score=132, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR000639 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: 3.3.2.3
Molecular weight: Translated: 35399; Mature: 35268
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEPNRVRVNGVEIGYYEAGPRQGVPVVLCHGFPELAFSWRHQIKALAAAGRWVIAPDQR CCCCCEEEEEEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCC GYGLSSKPDAVPDYDMAHLTGDLVGLLDHLGVEKAIFCGHDWGGIVVWQMPLMHPERVAG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHE VIGLNTPFLPRAPADPIAIFRHRFGPDMYIVWFQTPDEPEAVLGEDVAKTMRFFMRRPSA EEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHH LRTAAAQPEGGSSFAFRDLLRAWDGADGGDQLLSPDELAVFVETFEAGGFFGPVSWYRNF HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEEHHCCCCCCHHHHHHHH TRNWERAEGLPGRVDGLPCLMITAELDAVLTPEMAEPMKGLVGDLETHMVKGSGHWTQQE HCCHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCC KPGEVNVLILDWLDRRFPK CCCCEEEEEEEHHHHCCCC >Mature Secondary Structure PEPNRVRVNGVEIGYYEAGPRQGVPVVLCHGFPELAFSWRHQIKALAAAGRWVIAPDQR CCCCEEEEEEEEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCEEECCCCC GYGLSSKPDAVPDYDMAHLTGDLVGLLDHLGVEKAIFCGHDWGGIVVWQMPLMHPERVAG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCHHHHHE VIGLNTPFLPRAPADPIAIFRHRFGPDMYIVWFQTPDEPEAVLGEDVAKTMRFFMRRPSA EEECCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCHH LRTAAAQPEGGSSFAFRDLLRAWDGADGGDQLLSPDELAVFVETFEAGGFFGPVSWYRNF HHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHEEEEEEHHCCCCCCHHHHHHHH TRNWERAEGLPGRVDGLPCLMITAELDAVLTPEMAEPMKGLVGDLETHMVKGSGHWTQQE HCCHHHHCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCCCCC KPGEVNVLILDWLDRRFPK CCCCEEEEEEEHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: H2O; epoxide
Specific reaction: H2O + an epoxide = a glycol
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8946165; 9384377 [H]