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The map label for this gene is ycbB [H]

Identifier: 197105669

GI number: 197105669

Start: 2490828

End: 2492645

Strand: Reverse

Name: ycbB [H]

Synonym: PHZ_c2206

Alternate gene names: 197105669

Gene position: 2492645-2490828 (Counterclockwise)

Preceding gene: 197105670

Following gene: 197105668

Centisome position: 62.37

GC content: 75.41

Gene sequence:

>1818_bases
TTGCGCTGTCGCCTTCGCCGGCCTGGTGGGCCTCGGCGCCTGCGCCTCGACCAACGACGACATGGCCGCCGCCGACACCG
GGACCTCGGTGAACACCTACGCGGCTGCTCCGGCTCCCGCGCCGGCGCCCGCTCCGGCCCCGGCCGCCGCGCCCGCGCCG
GCTCCGGCGGACACCGGGACCGCCGCCGACGCGGCCGCGACCCGCGCCGGGGAACGCGGCTGATCCCAGCCGAAAGGCCG
CGCGCGCCCGCTCCACGGCGGACCGGGCGCGCGTGCGTCGCCGCCGCGCTGGCCGCTGCCGCGTCGCTGACGCTGGCGGG
GCCGGCGTTGGCGCAAGGACCGGCCGAACCGCCGCCGGCGCCTTCGGTCGCGCCGGAGGAGGCGATCGCGGCCGCGCTGC
GGAGCCAGATCGACGCCGCCGACCCCGAGGTGGCGGCGTTCTACCGCGCGCGCGGCTTCCGGCCGTTATGGACGCAAGCA
CGGCCGAGGCCGGAGGCCCTTGAGCTGGCGCGGGCCCTGGAGATCGAGGCCGCGGCGGGACCCGACGACCCGTGGCGGCT
GGCCGAGTTCGAGATCGCGCTGTCGAGCGCCTGGGCCGCGCGCGCCGCCGCCGGACCGAAGGTCGGCGAGGGCGAGCTGC
TGGCGTTCGTCGATCCGCGCCTCCTGCCGCGGGCCGGGCGCGGCCGCGCCGCCCTGGAGGCGGCCGCCGAGGCCGCGTCG
CTGCAGGAGCACCTGGAGGCCGCGCTCGCCGCCCGCAACCCGATCGTCGAGAATCTGGACCGCGCGCTCGAGCGCTACCG
CGCCCAGTGGAGCGGCCTGCCCGAAATCTTCATCCCGGCCGGGCGCGAGCTGGCGCCGGGCGTGCGCGACCCGCGTGTGG
ACCTCCTTCGCCTGCGCCTGGGGCTGCCCGACACCGGAGGCGCCTACGACGAGGTGCTGGAAGGCGCCGTGCGGGCGTTC
CAGCGGGCGCATGGATTGCCGGACACCGGCCGCGCCGACCGCACGACGCTGGAGGCGCTGAACGCCGGGGCCGCACACTA
CGAGCGCCTGGTGGAGGCGAACCTGGAGCGGGCGAGCGCCCTGCCGGCCTCGTTCGGCGAGCGGTTCATCCTGGTTGACG
CCGCCGCCGGGCAGCTCTGGTACTACGACCACGGCCAGCAGCTGGCCGCCATGAAGGTGGTCACGGGCAAGCCGAGCCAG
CCGACTCCGATGATGGTGGGGATGGTCAGCCACCTGATCTTCAATCCCTACTGGAACGTCCCCGAAGACCTGGTGCAGAC
CTCGATCGCCCCGAAGGTGCTGGAGCACGGCCTCGGCTACATCGAGGAGGAGGGGCTTGAGGTCCTGTCGGACTACACCG
CCGACGCCGTCGTGCTGGACCCGGCGGCGGTGGACTGGCGCGCGGTCGCGGCGGGAGCGCTGAGCGTGCGGGTGCGCCAG
AAGCCCGGTCCGAAGAACATGATGGGCAAGGTCAAGCTGATGCTGCCCAATCCGCTGGGGATCTACCTGCACGACACCCC
GCACCGCGGCGACTTCGCCCGCTCGCAGCGGCTGGCCAGCTCCGGGTGCGTGCGGCTCGAGGACGCCATGAGCCTGGCCC
GGCTGCTGGCCGGCGGGGACAAGGCCGAGGCCGCCCTGGCAGTGGGCGGCGAGGAGCGCCGGATCGACCTCGCCGAGCCG
GCGCCCGTCTACATCACCTACCTGACGGCGGCGCCCACGAGTGACGGCTTCATCTTCCGGCCCGATGTTTACGGACTGGA
CGCCGGTTGGGCGAGCCGCCACGCGGCCGGCGCGATCAGCGCCGTCGGCGGCGACTGA

Upstream 100 bases:

>100_bases
AATCCGACCACTGTTTTGTGAAGCTAGGGAACCTTGGCCGCCGAGCGCCGCTTGAAGCGCCGTCAGACATTGATGGGAGA
CTTCGAATGCGTGCTGCTGT

Downstream 100 bases:

>100_bases
TCCGAGGAACCAGCGGCCTGGCCAACGGAGTTGACTTCCGGTTTTACGTCTGTAGCTTGACGTTTCTACATACGTAAAAA
CGGGAGGTTTCGATGCGATC

Product: peptidoglycan-binding domain 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 605

Protein sequence:

>605_residues
MRCRLRRPGGPRRLRLDQRRHGRRRHRDLGEHLRGCSGSRAGARSGPGRRARAGSGGHRDRRRRGRDPRRGTRLIPAERP
RAPAPRRTGRACVAAALAAAASLTLAGPALAQGPAEPPPAPSVAPEEAIAAALRSQIDAADPEVAAFYRARGFRPLWTQA
RPRPEALELARALEIEAAAGPDDPWRLAEFEIALSSAWAARAAAGPKVGEGELLAFVDPRLLPRAGRGRAALEAAAEAAS
LQEHLEAALAARNPIVENLDRALERYRAQWSGLPEIFIPAGRELAPGVRDPRVDLLRLRLGLPDTGGAYDEVLEGAVRAF
QRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASALPASFGERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQ
PTPMMVGMVSHLIFNPYWNVPEDLVQTSIAPKVLEHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVRQ
KPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGGDKAEAALAVGGEERRIDLAEP
APVYITYLTAAPTSDGFIFRPDVYGLDAGWASRHAAGAISAVGGD

Sequences:

>Translated_605_residues
MRCRLRRPGGPRRLRLDQRRHGRRRHRDLGEHLRGCSGSRAGARSGPGRRARAGSGGHRDRRRRGRDPRRGTRLIPAERP
RAPAPRRTGRACVAAALAAAASLTLAGPALAQGPAEPPPAPSVAPEEAIAAALRSQIDAADPEVAAFYRARGFRPLWTQA
RPRPEALELARALEIEAAAGPDDPWRLAEFEIALSSAWAARAAAGPKVGEGELLAFVDPRLLPRAGRGRAALEAAAEAAS
LQEHLEAALAARNPIVENLDRALERYRAQWSGLPEIFIPAGRELAPGVRDPRVDLLRLRLGLPDTGGAYDEVLEGAVRAF
QRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASALPASFGERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQ
PTPMMVGMVSHLIFNPYWNVPEDLVQTSIAPKVLEHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVRQ
KPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGGDKAEAALAVGGEERRIDLAEP
APVYITYLTAAPTSDGFIFRPDVYGLDAGWASRHAAGAISAVGGD
>Mature_605_residues
MRCRLRRPGGPRRLRLDQRRHGRRRHRDLGEHLRGCSGSRAGARSGPGRRARAGSGGHRDRRRRGRDPRRGTRLIPAERP
RAPAPRRTGRACVAAALAAAASLTLAGPALAQGPAEPPPAPSVAPEEAIAAALRSQIDAADPEVAAFYRARGFRPLWTQA
RPRPEALELARALEIEAAAGPDDPWRLAEFEIALSSAWAARAAAGPKVGEGELLAFVDPRLLPRAGRGRAALEAAAEAAS
LQEHLEAALAARNPIVENLDRALERYRAQWSGLPEIFIPAGRELAPGVRDPRVDLLRLRLGLPDTGGAYDEVLEGAVRAF
QRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASALPASFGERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQ
PTPMMVGMVSHLIFNPYWNVPEDLVQTSIAPKVLEHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVRQ
KPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGGDKAEAALAVGGEERRIDLAEP
APVYITYLTAAPTSDGFIFRPDVYGLDAGWASRHAAGAISAVGGD

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=290, Percent_Identity=36.2068965517241, Blast_Score=173, Evalue=3e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 64931; Mature: 64931

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCRLRRPGGPRRLRLDQRRHGRRRHRDLGEHLRGCSGSRAGARSGPGRRARAGSGGHRD
CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
RRRRGRDPRRGTRLIPAERPRAPAPRRTGRACVAAALAAAASLTLAGPALAQGPAEPPPA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC
PSVAPEEAIAAALRSQIDAADPEVAAFYRARGFRPLWTQARPRPEALELARALEIEAAAG
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHCCCCC
PDDPWRLAEFEIALSSAWAARAAAGPKVGEGELLAFVDPRLLPRAGRGRAALEAAAEAAS
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
LQEHLEAALAARNPIVENLDRALERYRAQWSGLPEIFIPAGRELAPGVRDPRVDLLRLRL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHEE
GLPDTGGAYDEVLEGAVRAFQRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC
LPASFGERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQPTPMMVGMVSHLIFNPYWNV
CCHHHCCEEEEEEECCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
PEDLVQTSIAPKVLEHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVRQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCEEEEEEEC
KPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGGD
CCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCEEHHHHHHHHHHHHCCC
KAEAALAVGGEERRIDLAEPAPVYITYLTAAPTSDGFIFRPDVYGLDAGWASRHAAGAIS
CCCEEEEECCCCCEEECCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCHHHHHCCCCC
AVGGD
CCCCC
>Mature Secondary Structure
MRCRLRRPGGPRRLRLDQRRHGRRRHRDLGEHLRGCSGSRAGARSGPGRRARAGSGGHRD
CCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHH
RRRRGRDPRRGTRLIPAERPRAPAPRRTGRACVAAALAAAASLTLAGPALAQGPAEPPPA
HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC
PSVAPEEAIAAALRSQIDAADPEVAAFYRARGFRPLWTQARPRPEALELARALEIEAAAG
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHCCCCC
PDDPWRLAEFEIALSSAWAARAAAGPKVGEGELLAFVDPRLLPRAGRGRAALEAAAEAAS
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH
LQEHLEAALAARNPIVENLDRALERYRAQWSGLPEIFIPAGRELAPGVRDPRVDLLRLRL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHEE
GLPDTGGAYDEVLEGAVRAFQRAHGLPDTGRADRTTLEALNAGAAHYERLVEANLERASA
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHC
LPASFGERFILVDAAAGQLWYYDHGQQLAAMKVVTGKPSQPTPMMVGMVSHLIFNPYWNV
CCHHHCCEEEEEEECCCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCC
PEDLVQTSIAPKVLEHGLGYIEEEGLEVLSDYTADAVVLDPAAVDWRAVAAGALSVRVRQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCEEEEEEEC
KPGPKNMMGKVKLMLPNPLGIYLHDTPHRGDFARSQRLASSGCVRLEDAMSLARLLAGGD
CCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCEEHHHHHHHHHHHHCCC
KAEAALAVGGEERRIDLAEPAPVYITYLTAAPTSDGFIFRPDVYGLDAGWASRHAAGAIS
CCCEEEEECCCCCEEECCCCCCEEEEEEEECCCCCCEEECCCCCCCCCCCHHHHHCCCCC
AVGGD
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]