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The map label for this gene is yciR [C]

Identifier: 197105670

GI number: 197105670

Start: 2492750

End: 2495065

Strand: Reverse

Name: yciR [C]

Synonym: PHZ_c2207

Alternate gene names: 197105670

Gene position: 2495065-2492750 (Counterclockwise)

Preceding gene: 197105671

Following gene: 197105669

Centisome position: 62.44

GC content: 72.97

Gene sequence:

>2316_bases
GTGCTGATCGGCTGTTGCGTCGCCCTGGCCCAGGCCGCAGGCCTGCTGCGGCCGATCGACGACGGCCTGGCCCGCCTGCG
CTTCGACCTTCTCGAGCGGCCGGCGACCGGCACGATGACGGTGGTCGAGATCGACGCGGCCAGCCTGAGGGCGGCGGACC
GCTGGCCCTGGGGACGGGAGCGCTTCGCCCAGGCGATCCGCAACCTGCAGGACGCGGGCGCCGAGGTGGTGGCGCTGGAT
GTGGACTTCAGCGCCCGGTCCTCTCCGGAGGGCGATGCGGCGCTGAAGGCCGCCATCGACCGGCGACCGGGCGAAGTGGT
CCTGCCGACGTTCGTGCAGAAGGCCGGCGAGCAGGGCGGCCTGGTGGAGAGTTCGCCCCTGGACGGCCTCGCGGACCAGG
CGCTGCTGGCCAGCGTGAACGTGCCGGTGGACGCCGACGGGCGCGTGCGCCGCTACAGCCTGGGCTTCGGCGGCCAAGAC
GACTTCCGCCCCTCGATCGCCGCCCTGCTGGCGGACACGCCCTACGGTCGGACCGAGGACTTCCTGATCGACTACGGCAT
CCGTCCGACCTTCGGGCGGCTGAGCTTCGAGGACGTCCGGACGGGCCGCTTCGACCCGGCGCTGGTGGACGGACGCCGGA
TCCTGATCGGAGCTACGGCGCTGGAACTCGGCGACGAGTTCGCGGCGCCGAAGGCCGGCGTGATGGCGGGCGTGCATCTG
CACGCCCTCGCCTACGAGAGCCTGATGAGCGGTCGGGCGCTGCGGCCGGCGCACCCGCTGGCGATCCTGGCGCTCGCGTG
CGCGGTGGCTTTCCTCCTGCGGCCGAGGGCTCAGTTCGAGCTTTCGCCGATGCTGCGCCAGCATGCGCTGGTGGCCGCCG
GGGCGGTGGGGCTGCCGCTGATGCTGCAGGCGCTGGCGCCCGTCAGCCTGGACGCCGGCGCCGTGCTGCTGGCGCAGGGC
CTGTGCCTCATCTGGACGGTGCGCGCCGAACTCAGACGACGGGCCGAGGCGATCGTGCGCGAGCGTGAGGCGGCCCTCCT
GCACCAGGCCATGCACGAACCCGAGACCGGCCTCCCGAACCGGCGCGCCCTGCTGGAGGAGATCGGCCGGCGGATGACGG
GCGACCGGCGCCGGTCCGTGGCCGTGCTCGCCGTCGGCCTGGACCGCGTCAGCGTCCTGCGCGGGGCGATCGGCTACGGA
CGCTTCCACGAAGTGGTGCGGCAGGTGGCGTCCCGGATCGGCGAGGCGAGCGGCGAGCCGCTGGTCGCCCACCTCTCCAG
CTCGGTCCTGGGCGTCGTCATCTCGGCGCGCACGGCCGAGGCGCTCCGGACCCGGGTGCGCCGCGTCGAGCGCCTGGATC
CGTCGCTGGCGATCGAGGATCTGCCGGTGGACGCGTTCGTGCGCGTGGGGGCGGCGTATCGCCGGCGGGGCGAGACGGCG
GAGACCCTGCTGGAGCACGCCAGCATCGCCCTGGACCGGGCGCGCGAGCTTGACCGGCGCGCCCTGGCCTTTCACGAAGC
CAAGGTCGGGGATCCGTCGCTGAACCTGGCCCTGATGAGCGACATGCGGCGGGGGCTCGCGGCCGGGGAGCTGGCGCTGC
ACTACCAGCCCAAGGTCCACGCCAAGAGCGGCCGGGTGACTGGTGTCGAGGCGCTGGTGCGCTGGACCCATCCGAGCCGG
GGCCCCATCGCGCCGGACCTGCTGATCTCCACCGCCGAAGAGACCGGCATGATCCGGGCCCTGACCGAATGGGGGATCGC
GCAGGCGGTGGCAGACCTCGGCGCCCTGGGAGCGGGCGGGCACGACCTGACCGTGGCGGTCAACGTCTCGGCCGGGCTGC
TGGCGGACCGGACGTTCCGCGAGCGCCTGACCAGGGCGGCGGCCGGTCATGCCAATCGCCTGTGCCTCGAGATCACGGAG
TCGGCGATCATCCGCAACCCCGACGAGGCCATGAGGGCCATCGCCGAGTTCCGCGCCGCCGGGCTGAAGATCGCCATCGA
CGACTACGGCACCGGCTTGTCGTCGCTGTCGTACCTGAAGCTGATCGAGGCCGACGAGCTGAAGCTCGACAAGTCGCTGG
TGGCGGCGGTGAACGACAGCGCGCGGGACCGGCTGATACTGAAGTCCACGGTGGACCTGGCGCACAGCCTGGGGATGTCG
GTGGTCGCGGAGGGGGTTGAGACGCGCTCCGTGCTCGCCGCCCTGGCGGCCATGGGTTGCGACGTGGTCCAGGGCTACCT
GGTCTCGAAAGCCCTGCCGATCGGGGAACTCCACGCCTTCCTCGAGAGCCGCTCGCGGCCCGCGCGAGCCGCGTGA

Upstream 100 bases:

>100_bases
AGGGCAATTGATTCGCTTTCGCCTGCCAAGAAGGCTCCCGAAGGAGCTGCTGAGTGAGCGCCCAGCGCGGGCCGGCTTCC
TGACCAGGGCGGCCGGCCTT

Downstream 100 bases:

>100_bases
CGGCAATCCGACCACTGTTTTGTGAAGCTAGGGAACCTTGGCCGCCGAGCGCCGCTTGAAGCGCCGTCAGACATTGATGG
GAGACTTCGAATGCGTGCTG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 771; Mature: 771

Protein sequence:

>771_residues
MLIGCCVALAQAAGLLRPIDDGLARLRFDLLERPATGTMTVVEIDAASLRAADRWPWGRERFAQAIRNLQDAGAEVVALD
VDFSARSSPEGDAALKAAIDRRPGEVVLPTFVQKAGEQGGLVESSPLDGLADQALLASVNVPVDADGRVRRYSLGFGGQD
DFRPSIAALLADTPYGRTEDFLIDYGIRPTFGRLSFEDVRTGRFDPALVDGRRILIGATALELGDEFAAPKAGVMAGVHL
HALAYESLMSGRALRPAHPLAILALACAVAFLLRPRAQFELSPMLRQHALVAAGAVGLPLMLQALAPVSLDAGAVLLAQG
LCLIWTVRAELRRRAEAIVREREAALLHQAMHEPETGLPNRRALLEEIGRRMTGDRRRSVAVLAVGLDRVSVLRGAIGYG
RFHEVVRQVASRIGEASGEPLVAHLSSSVLGVVISARTAEALRTRVRRVERLDPSLAIEDLPVDAFVRVGAAYRRRGETA
ETLLEHASIALDRARELDRRALAFHEAKVGDPSLNLALMSDMRRGLAAGELALHYQPKVHAKSGRVTGVEALVRWTHPSR
GPIAPDLLISTAEETGMIRALTEWGIAQAVADLGALGAGGHDLTVAVNVSAGLLADRTFRERLTRAAAGHANRLCLEITE
SAIIRNPDEAMRAIAEFRAAGLKIAIDDYGTGLSSLSYLKLIEADELKLDKSLVAAVNDSARDRLILKSTVDLAHSLGMS
VVAEGVETRSVLAALAAMGCDVVQGYLVSKALPIGELHAFLESRSRPARAA

Sequences:

>Translated_771_residues
MLIGCCVALAQAAGLLRPIDDGLARLRFDLLERPATGTMTVVEIDAASLRAADRWPWGRERFAQAIRNLQDAGAEVVALD
VDFSARSSPEGDAALKAAIDRRPGEVVLPTFVQKAGEQGGLVESSPLDGLADQALLASVNVPVDADGRVRRYSLGFGGQD
DFRPSIAALLADTPYGRTEDFLIDYGIRPTFGRLSFEDVRTGRFDPALVDGRRILIGATALELGDEFAAPKAGVMAGVHL
HALAYESLMSGRALRPAHPLAILALACAVAFLLRPRAQFELSPMLRQHALVAAGAVGLPLMLQALAPVSLDAGAVLLAQG
LCLIWTVRAELRRRAEAIVREREAALLHQAMHEPETGLPNRRALLEEIGRRMTGDRRRSVAVLAVGLDRVSVLRGAIGYG
RFHEVVRQVASRIGEASGEPLVAHLSSSVLGVVISARTAEALRTRVRRVERLDPSLAIEDLPVDAFVRVGAAYRRRGETA
ETLLEHASIALDRARELDRRALAFHEAKVGDPSLNLALMSDMRRGLAAGELALHYQPKVHAKSGRVTGVEALVRWTHPSR
GPIAPDLLISTAEETGMIRALTEWGIAQAVADLGALGAGGHDLTVAVNVSAGLLADRTFRERLTRAAAGHANRLCLEITE
SAIIRNPDEAMRAIAEFRAAGLKIAIDDYGTGLSSLSYLKLIEADELKLDKSLVAAVNDSARDRLILKSTVDLAHSLGMS
VVAEGVETRSVLAALAAMGCDVVQGYLVSKALPIGELHAFLESRSRPARAA
>Mature_771_residues
MLIGCCVALAQAAGLLRPIDDGLARLRFDLLERPATGTMTVVEIDAASLRAADRWPWGRERFAQAIRNLQDAGAEVVALD
VDFSARSSPEGDAALKAAIDRRPGEVVLPTFVQKAGEQGGLVESSPLDGLADQALLASVNVPVDADGRVRRYSLGFGGQD
DFRPSIAALLADTPYGRTEDFLIDYGIRPTFGRLSFEDVRTGRFDPALVDGRRILIGATALELGDEFAAPKAGVMAGVHL
HALAYESLMSGRALRPAHPLAILALACAVAFLLRPRAQFELSPMLRQHALVAAGAVGLPLMLQALAPVSLDAGAVLLAQG
LCLIWTVRAELRRRAEAIVREREAALLHQAMHEPETGLPNRRALLEEIGRRMTGDRRRSVAVLAVGLDRVSVLRGAIGYG
RFHEVVRQVASRIGEASGEPLVAHLSSSVLGVVISARTAEALRTRVRRVERLDPSLAIEDLPVDAFVRVGAAYRRRGETA
ETLLEHASIALDRARELDRRALAFHEAKVGDPSLNLALMSDMRRGLAAGELALHYQPKVHAKSGRVTGVEALVRWTHPSR
GPIAPDLLISTAEETGMIRALTEWGIAQAVADLGALGAGGHDLTVAVNVSAGLLADRTFRERLTRAAAGHANRLCLEITE
SAIIRNPDEAMRAIAEFRAAGLKIAIDDYGTGLSSLSYLKLIEADELKLDKSLVAAVNDSARDRLILKSTVDLAHSLGMS
VVAEGVETRSVLAALAAMGCDVVQGYLVSKALPIGELHAFLESRSRPARAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=410, Percent_Identity=31.7073170731707, Blast_Score=170, Evalue=3e-43,
Organism=Escherichia coli, GI87081921, Length=461, Percent_Identity=28.1995661605206, Blast_Score=168, Evalue=1e-42,
Organism=Escherichia coli, GI1787055, Length=422, Percent_Identity=27.4881516587678, Blast_Score=160, Evalue=3e-40,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=34.6613545816733, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=34.0163934426229, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=32.6848249027237, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081845, Length=252, Percent_Identity=32.9365079365079, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=228, Percent_Identity=32.8947368421053, Blast_Score=122, Evalue=9e-29,
Organism=Escherichia coli, GI1786507, Length=235, Percent_Identity=33.6170212765957, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI226510982, Length=430, Percent_Identity=26.7441860465116, Blast_Score=117, Evalue=4e-27,
Organism=Escherichia coli, GI87082096, Length=464, Percent_Identity=25.8620689655172, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1788849, Length=270, Percent_Identity=28.5185185185185, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI1787410, Length=225, Percent_Identity=28.8888888888889, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82480; Mature: 82480

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGCCVALAQAAGLLRPIDDGLARLRFDLLERPATGTMTVVEIDAASLRAADRWPWGRE
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCCCCCHH
RFAQAIRNLQDAGAEVVALDVDFSARSSPEGDAALKAAIDRRPGEVVLPTFVQKAGEQGG
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHCCCCCC
LVESSPLDGLADQALLASVNVPVDADGRVRRYSLGFGGQDDFRPSIAALLADTPYGRTED
CCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCC
FLIDYGIRPTFGRLSFEDVRTGRFDPALVDGRRILIGATALELGDEFAAPKAGVMAGVHL
EEEECCCCCCCCCCCHHHHCCCCCCCCEECCCEEEEEHHHHHHCHHHCCCCHHHHHHHHH
HALAYESLMSGRALRPAHPLAILALACAVAFLLRPRAQFELSPMLRQHALVAAGAVGLPL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHH
MLQALAPVSLDAGAVLLAQGLCLIWTVRAELRRRAEAIVREREAALLHQAMHEPETGLPN
HHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RRALLEEIGRRMTGDRRRSVAVLAVGLDRVSVLRGAIGYGRFHEVVRQVASRIGEASGEP
HHHHHHHHHHHCCCCHHCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
LVAHLSSSVLGVVISARTAEALRTRVRRVERLDPSLAIEDLPVDAFVRVGAAYRRRGETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCHH
ETLLEHASIALDRARELDRRALAFHEAKVGDPSLNLALMSDMRRGLAAGELALHYQPKVH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEE
AKSGRVTGVEALVRWTHPSRGPIAPDLLISTAEETGMIRALTEWGIAQAVADLGALGAGG
CCCCCCHHHHHHHEECCCCCCCCCHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
HDLTVAVNVSAGLLADRTFRERLTRAAAGHANRLCLEITESAIIRNPDEAMRAIAEFRAA
CEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHCCHHHHHHHHHHHHHC
GLKIAIDDYGTGLSSLSYLKLIEADELKLDKSLVAAVNDSARDRLILKSTVDLAHSLGMS
CCEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHEHHHHHHHHHHHHCHH
VVAEGVETRSVLAALAAMGCDVVQGYLVSKALPIGELHAFLESRSRPARAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLIGCCVALAQAAGLLRPIDDGLARLRFDLLERPATGTMTVVEIDAASLRAADRWPWGRE
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCCCCCHH
RFAQAIRNLQDAGAEVVALDVDFSARSSPEGDAALKAAIDRRPGEVVLPTFVQKAGEQGG
HHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHCCCCCC
LVESSPLDGLADQALLASVNVPVDADGRVRRYSLGFGGQDDFRPSIAALLADTPYGRTED
CCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCC
FLIDYGIRPTFGRLSFEDVRTGRFDPALVDGRRILIGATALELGDEFAAPKAGVMAGVHL
EEEECCCCCCCCCCCHHHHCCCCCCCCEECCCEEEEEHHHHHHCHHHCCCCHHHHHHHHH
HALAYESLMSGRALRPAHPLAILALACAVAFLLRPRAQFELSPMLRQHALVAAGAVGLPL
HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHHHHHH
MLQALAPVSLDAGAVLLAQGLCLIWTVRAELRRRAEAIVREREAALLHQAMHEPETGLPN
HHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
RRALLEEIGRRMTGDRRRSVAVLAVGLDRVSVLRGAIGYGRFHEVVRQVASRIGEASGEP
HHHHHHHHHHHCCCCHHCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCC
LVAHLSSSVLGVVISARTAEALRTRVRRVERLDPSLAIEDLPVDAFVRVGAAYRRRGETA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCHH
ETLLEHASIALDRARELDRRALAFHEAKVGDPSLNLALMSDMRRGLAAGELALHYQPKVH
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCEE
AKSGRVTGVEALVRWTHPSRGPIAPDLLISTAEETGMIRALTEWGIAQAVADLGALGAGG
CCCCCCHHHHHHHEECCCCCCCCCHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
HDLTVAVNVSAGLLADRTFRERLTRAAAGHANRLCLEITESAIIRNPDEAMRAIAEFRAA
CEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHCCHHHHHHHHHHHHHC
GLKIAIDDYGTGLSSLSYLKLIEADELKLDKSLVAAVNDSARDRLILKSTVDLAHSLGMS
CCEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHEHHHHHHHHHHHHCHH
VVAEGVETRSVLAALAAMGCDVVQGYLVSKALPIGELHAFLESRSRPARAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]