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The map label for this gene is yhdY [H]

Identifier: 197105611

GI number: 197105611

Start: 2419658

End: 2420839

Strand: Reverse

Name: yhdY [H]

Synonym: PHZ_c2148

Alternate gene names: 197105611

Gene position: 2420839-2419658 (Counterclockwise)

Preceding gene: 197105612

Following gene: 197105605

Centisome position: 60.58

GC content: 69.29

Gene sequence:

>1182_bases
ATGCAGAGCAGCGAGAAGCCCGCCGTCTTCACCGCGCCGAAGGTCCAGGTCGCCCCCGACCAGGTCTGGCGCGACCTGCA
GACCTGGGTGCAGGCCAACGGGACCGAGATCGTCATCGCGCTCGCGGCGGGCCTCGTCGTCTACCTGGGCCTCAGCCTGG
CCCGCAGCGTCTTCGCGCGCCTGAAGGACAAGCCCGGCGCGCCGCTCGGCTTCCGCGCTCTGGTGGGGCGGGCCGCCAGC
CGCACCACCCAGCTTTTCCTGATGCTCGCCGCGGCCAAGCTGGTCGGCGGCTACGCCGACCCGCCGGCGCCGCTCGCCCG
GACGATCGACTTCCTCTTCACCATCGTCGCCGCGTTCCAGGCCGCCGTCTGGCTTCGCGAGGTGGTGCTCGGCCTCATCG
AGCGCCGCACGGCCGAGGAGGGGCAGGGGGAGACGCTCGCCAACGCCATGGGCATCATCCGCCTGCTGGTGACCGTGGCC
ATCTTCGCGGTGGCCGTGATCGTCGTGCTGGACAACGTAGGCGTGAACGTCACCGCCCTCGTCGCCGGCCTGGGCATCGG
CGGCATCGCCATCGGCCTCGCCGCCCAGGGCATCTTCTCCGATCTGTTCGCGGCGCTCTCGATCATCTTCGACAAGCCGT
TCCGGATGGGCGAGACGATCAACTACGACACCACCACGGCCACGGTGGAGAAGATCGGCCTGAAGAGCACGCGCCTGCGC
GCCATCAGCGGCGAGCGCAAGATCATCTCCAACGCCAATCTCCTGCAGAAGGAGATCACCAGCTACCAGACGCTCGATCA
CCGGCGTCTGAAGTTCGCCATCGGGGTGATCTACCAGACCGACCCGGACCTGGCGGCGCGCATCCCCGACGTCCTGCGCG
GGATCGTCGAGGCGGAAGGGGCCAGCTTCGTCCGCTCGGGTTTCGTGGGCTTCGGCGCGAGCTCGTTGGATTTCGAGGTG
GAGTTCGACGTCTACCGACCCGACTGGGAGGAGATCTACGCCATCCGCCACCGCATCGGGCTCGCCATACTGCGCCGGTT
CAACGCCGAAGGCCTGGAATTCGCCTATCCCACCCAGACCACCTTCACCGCCGCGCCCGACGGCCGGATGATCCTGCCGT
ACCCGGAAGGCGGGTTCGCCGTGGCGCCTGCGCCCGCGCCGGACGACGGCGCTCGCCGCTAG

Upstream 100 bases:

>100_bases
GGCGCTACGGCGAGACGGGCGAGCCCGCGCGGGCCTGACCCGGTCGGCCGGCGCGTCCTGACCCCTGTTCAGGCCCCCTC
CGCCCGATTACGGAAGGGGC

Downstream 100 bases:

>100_bases
CCTACGTCAGGCGCATGACGGCCACGGGGTCGGACGCAGGGAAGGTTTCCTCGAGGGCCTCGTCCAGCAGCTGCTCCTGG
CGGGCCTGGGCGCGCATGGC

Product: small-conductance mechanosensitive channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MQSSEKPAVFTAPKVQVAPDQVWRDLQTWVQANGTEIVIALAAGLVVYLGLSLARSVFARLKDKPGAPLGFRALVGRAAS
RTTQLFLMLAAAKLVGGYADPPAPLARTIDFLFTIVAAFQAAVWLREVVLGLIERRTAEEGQGETLANAMGIIRLLVTVA
IFAVAVIVVLDNVGVNVTALVAGLGIGGIAIGLAAQGIFSDLFAALSIIFDKPFRMGETINYDTTTATVEKIGLKSTRLR
AISGERKIISNANLLQKEITSYQTLDHRRLKFAIGVIYQTDPDLAARIPDVLRGIVEAEGASFVRSGFVGFGASSLDFEV
EFDVYRPDWEEIYAIRHRIGLAILRRFNAEGLEFAYPTQTTFTAAPDGRMILPYPEGGFAVAPAPAPDDGARR

Sequences:

>Translated_393_residues
MQSSEKPAVFTAPKVQVAPDQVWRDLQTWVQANGTEIVIALAAGLVVYLGLSLARSVFARLKDKPGAPLGFRALVGRAAS
RTTQLFLMLAAAKLVGGYADPPAPLARTIDFLFTIVAAFQAAVWLREVVLGLIERRTAEEGQGETLANAMGIIRLLVTVA
IFAVAVIVVLDNVGVNVTALVAGLGIGGIAIGLAAQGIFSDLFAALSIIFDKPFRMGETINYDTTTATVEKIGLKSTRLR
AISGERKIISNANLLQKEITSYQTLDHRRLKFAIGVIYQTDPDLAARIPDVLRGIVEAEGASFVRSGFVGFGASSLDFEV
EFDVYRPDWEEIYAIRHRIGLAILRRFNAEGLEFAYPTQTTFTAAPDGRMILPYPEGGFAVAPAPAPDDGARR
>Mature_393_residues
MQSSEKPAVFTAPKVQVAPDQVWRDLQTWVQANGTEIVIALAAGLVVYLGLSLARSVFARLKDKPGAPLGFRALVGRAAS
RTTQLFLMLAAAKLVGGYADPPAPLARTIDFLFTIVAAFQAAVWLREVVLGLIERRTAEEGQGETLANAMGIIRLLVTVA
IFAVAVIVVLDNVGVNVTALVAGLGIGGIAIGLAAQGIFSDLFAALSIIFDKPFRMGETINYDTTTATVEKIGLKSTRLR
AISGERKIISNANLLQKEITSYQTLDHRRLKFAIGVIYQTDPDLAARIPDVLRGIVEAEGASFVRSGFVGFGASSLDFEV
EFDVYRPDWEEIYAIRHRIGLAILRRFNAEGLEFAYPTQTTFTAAPDGRMILPYPEGGFAVAPAPAPDDGARR

Specific function: May play a role in resistance to osmotic downshock [H]

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=207, Percent_Identity=31.4009661835749, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787591, Length=260, Percent_Identity=25.3846153846154, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 42321; Mature: 42321

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSSEKPAVFTAPKVQVAPDQVWRDLQTWVQANGTEIVIALAAGLVVYLGLSLARSVFAR
CCCCCCCEEEECCCCEECHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
LKDKPGAPLGFRALVGRAASRTTQLFLMLAAAKLVGGYADPPAPLARTIDFLFTIVAAFQ
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AAVWLREVVLGLIERRTAEEGQGETLANAMGIIRLLVTVAIFAVAVIVVLDNVGVNVTAL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VAGLGIGGIAIGLAAQGIFSDLFAALSIIFDKPFRMGETINYDTTTATVEKIGLKSTRLR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHH
AISGERKIISNANLLQKEITSYQTLDHRRLKFAIGVIYQTDPDLAARIPDVLRGIVEAEG
HHCCCHHHHHCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHCC
ASFVRSGFVGFGASSLDFEVEFDVYRPDWEEIYAIRHRIGLAILRRFNAEGLEFAYPTQT
HHHHHHCCHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
TFTAAPDGRMILPYPEGGFAVAPAPAPDDGARR
EEEECCCCCEEEECCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure
MQSSEKPAVFTAPKVQVAPDQVWRDLQTWVQANGTEIVIALAAGLVVYLGLSLARSVFAR
CCCCCCCEEEECCCCEECHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHH
LKDKPGAPLGFRALVGRAASRTTQLFLMLAAAKLVGGYADPPAPLARTIDFLFTIVAAFQ
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
AAVWLREVVLGLIERRTAEEGQGETLANAMGIIRLLVTVAIFAVAVIVVLDNVGVNVTAL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VAGLGIGGIAIGLAAQGIFSDLFAALSIIFDKPFRMGETINYDTTTATVEKIGLKSTRLR
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHH
AISGERKIISNANLLQKEITSYQTLDHRRLKFAIGVIYQTDPDLAARIPDVLRGIVEAEG
HHCCCHHHHHCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHCC
ASFVRSGFVGFGASSLDFEVEFDVYRPDWEEIYAIRHRIGLAILRRFNAEGLEFAYPTQT
HHHHHHCCHHCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
TFTAAPDGRMILPYPEGGFAVAPAPAPDDGARR
EEEECCCCCEEEECCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]