Click here to switch to the map view.

The map label for this gene is ydhC [H]

Identifier: 197105593

GI number: 197105593

Start: 2396882

End: 2397571

Strand: Reverse

Name: ydhC [H]

Synonym: PHZ_c2130

Alternate gene names: 197105593

Gene position: 2397571-2396882 (Counterclockwise)

Preceding gene: 197105596

Following gene: 197105592

Centisome position: 60.0

GC content: 71.88

Gene sequence:

>690_bases
ATGGCGGATGCGGTTGAGCGGGCCTATCGGACCATTCGCGACGGCATCATGAACGGGCTGTACCCCCAGGGGGCGCACAT
CACCGCGCAGGACCTGGCGGCGGCGAGCGGGCTTTCCCGCACTCCCGTGCGGGAGGCGATGCGGCGGCTGCAGTCGGAAG
GTCTCATCGTGATCTACCCGAACCGCGGCGCCTTCGTCGCCAGCTGGAACGAACGGGACATCCACAAGATCTACGACCTG
CGGGTCCTGCTGGAGGGGTACGCCGCCGAAGCCGCCGCGCTCGAGGCGGACGAGGCCGCCGTCGCCGAGCTGACGCGCCT
CGCGCGCGAAATGGCCGACGCGGTCGAGCGCCAGGACGCCGACGTGGTCGACCAGGTGGCGCAGATCAACAGCGACTTCC
ACCGGCTGGTGATCGCCGCCGCCGCCAACCCCCGCCTGGATGTGGCCCTCGCCTCGATCGTGGAGGTGCCGCTCGTGCTG
CGCACCTTCCGCCGCTACAGCCTCGAGGAGATGCGCCGCAGCGCCGCCCAGCACCTGGAGCTCGTCGCCGCCATCGCGGC
GCGGGACGGCGTCTGGGCCCGCAGCGTGATGACCAGCCACATCCTCTCGGGCCGCAACGCGCTGCTTCGCTCGTTCGCCA
CCGAGGCGGCCTCGCAGGCCCAGGCCGCGCCGGATAGGGCGGCCGGATAG

Upstream 100 bases:

>100_bases
ATCCATATGGCGCAAGGTGGCGCGCCGAGTCGCCTGCGCTCGACGACGAGCGCCCGGATGTCGTACTCAATCCGGTGAGA
CGGACGGGGGCGAAGGCGTC

Downstream 100 bases:

>100_bases
GGCCTCAGCGCCCATTGCATGCAAGGGCAGGGATTTCCTTGTCGCTGACGTGTGGACCGCCTTGACTGGGCGCGTTAGTC
TGCATGCAGTCTTGCGAAAC

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MADAVERAYRTIRDGIMNGLYPQGAHITAQDLAAASGLSRTPVREAMRRLQSEGLIVIYPNRGAFVASWNERDIHKIYDL
RVLLEGYAAEAAALEADEAAVAELTRLAREMADAVERQDADVVDQVAQINSDFHRLVIAAAANPRLDVALASIVEVPLVL
RTFRRYSLEEMRRSAAQHLELVAAIAARDGVWARSVMTSHILSGRNALLRSFATEAASQAQAAPDRAAG

Sequences:

>Translated_229_residues
MADAVERAYRTIRDGIMNGLYPQGAHITAQDLAAASGLSRTPVREAMRRLQSEGLIVIYPNRGAFVASWNERDIHKIYDL
RVLLEGYAAEAAALEADEAAVAELTRLAREMADAVERQDADVVDQVAQINSDFHRLVIAAAANPRLDVALASIVEVPLVL
RTFRRYSLEEMRRSAAQHLELVAAIAARDGVWARSVMTSHILSGRNALLRSFATEAASQAQAAPDRAAG
>Mature_228_residues
ADAVERAYRTIRDGIMNGLYPQGAHITAQDLAAASGLSRTPVREAMRRLQSEGLIVIYPNRGAFVASWNERDIHKIYDLR
VLLEGYAAEAAALEADEAAVAELTRLAREMADAVERQDADVVDQVAQINSDFHRLVIAAAANPRLDVALASIVEVPLVLR
TFRRYSLEEMRRSAAQHLELVAAIAARDGVWARSVMTSHILSGRNALLRSFATEAASQAQAAPDRAAG

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=201, Percent_Identity=26.3681592039801, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24945; Mature: 24813

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADAVERAYRTIRDGIMNGLYPQGAHITAQDLAAASGLSRTPVREAMRRLQSEGLIVIYP
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEC
NRGAFVASWNERDIHKIYDLRVLLEGYAAEAAALEADEAAVAELTRLAREMADAVERQDA
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCH
DVVDQVAQINSDFHRLVIAAAANPRLDVALASIVEVPLVLRTFRRYSLEEMRRSAAQHLE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAAIAARDGVWARSVMTSHILSGRNALLRSFATEAASQAQAAPDRAAG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ADAVERAYRTIRDGIMNGLYPQGAHITAQDLAAASGLSRTPVREAMRRLQSEGLIVIYP
CHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEC
NRGAFVASWNERDIHKIYDLRVLLEGYAAEAAALEADEAAVAELTRLAREMADAVERQDA
CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCH
DVVDQVAQINSDFHRLVIAAAANPRLDVALASIVEVPLVLRTFRRYSLEEMRRSAAQHLE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVAAIAARDGVWARSVMTSHILSGRNALLRSFATEAASQAQAAPDRAAG
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]