| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is fyuA [H]
Identifier: 197105559
GI number: 197105559
Start: 2349710
End: 2351923
Strand: Reverse
Name: fyuA [H]
Synonym: PHZ_c2096
Alternate gene names: 197105559
Gene position: 2351923-2349710 (Counterclockwise)
Preceding gene: 197105560
Following gene: 197105558
Centisome position: 58.85
GC content: 67.48
Gene sequence:
>2214_bases ATGAAAGCCTTTGTGAAGGCGGCCCTCTTCGCGGGCGCCGCCTGGTCCGCCGTTCCGGCTCTCGCCCAAGCCCAGGTCGC CGCGGAAGAGCCCGGCCTGGTCGAGGAGCTGGTGGTCACTGCGCGGCGCCGCGAAGAGAGCCTGAAGGACGTCCCGGTCG CCGTGACCGCGCTGTCGGGCGAGCGCCTGGCCGCGACCGGCGCCGTGGACCTGACCACGCTCCAGCAGTCGACGCCGAAC ACGACCGTGCAGGTCGCCCGCGGCTCGAACTCGACCCTGATCTCCTTCATCCGCGGCGTCGGCCAGCAGGATCCGCTGTG GGGCTTCGAGCCGGGCGTCGGCCTCTACATCGACGACGTCTACATCGCCCGTCCCCAGGGCGCGGTGCTCGACATCTTCG ACATCGAGCGGGTGGAAGTGCTGCGCGGGCCGCAGGGCACGCTCTACGGCCGCAACACCATCGGCGGCGCCATCAAGTAC GTCACCGCCAAGATCGAGGGCGAGCCCGAGCTGAAGCTGAAGGGCCAGGTCGGCTCGTACGACCAGCGCGACATCGTCGC CTCGGCCAAGGGCCGGGTGAACGATTACGTCGGCGTGGGCCTCACCTGGGCCAGCTTCAACCGTGACGGCTTCGGCAAGA ACATCGTCACGGGCGCCGAGCACTACGACAAGGACGTGACCGCCGCCCGGGCCACCCTCGAGTTCACCCCGACCGAGGAC CTGTTCTTCCGCCTGGCGGGCGACATCGTCACCGACCGCTCCAACCCCCGCCACGGCCACCGCGAGCTGCCGACGCTGAA CGTCCTCGGCCAGCCCGTTCCGGGCGGCGAGGTGCTGGACGACGTCTATGACACCCGCGCCGGCTCGGGCGACCACAACT TCGTGGAAGCCCGCGGCGTCTCGTTCCTGGGCGAATGGAACGTCAACGACGTGATCACCCTGAAGTCGATCAGCGCCTAC CGCGCCGGCGAAACCGAGGGCACCATCGACTTCGACGCCGAGCAGGCGCCGTACCTCGACATTCCGGCCCGCTACAACGA CCACCAGTTCACCCAGGAACTGCAGCTGCTGTACTCGGGCGACCGGCTGCAGGGCGTGTTCGGCGTCTACTACCTGAACG CCACCGCCGCCGGCGCCTTCGACACGGTGCTGGGCCAGCTCAACACCACGACCGCCACGGCCGGTCACGTGGACACCGAA AGCTGGTCGGTGTTCGGCGACGTCAGCTACGACGTGACCGAGCAGCTGTCGCTGTCGGTCGGCGGCCGCTACACCCGCGA CGAGAAGACCGGCCAGGTCTATCGCCAGAACTTCACCGGCCTGAAGAGCCCGCTGTTCGGCAACAATCTCGCCGTCCCGG GCCTGCTCCGGTCGAACTTCACCAGCTCCGACACCTACGAGAAGTTCACCCCGCGGGTGAGCGCCAGCTACGAGATCAGC CCGGACCTGACCGGCTACGTCTCGTACAGCCAGGGCTTCAAATCGGGCGGCTTCGACATGCGCGCCGACCAGATCCTGAC GCCGGACTCGGCCGACGGCTACCAGCCGGAGAAGGTGCAGTCGTACGAGGGCGGCCTGAAGGGCTACTTCTTCGACCGTC GCCTGACGCTGAACACCGCGGTGTTCTACGCCAAGTACGAGGACCAGCAGGTCACCATCCAGACCCCCGTCGGCACGTCG ATCGCCAGCCAGGTGCTGAACGTGGGCAAGTCGCACATGTACGGCCTGGAAGTGGAAGGCTCGGCGGTCCTCGCCGACAG CCTGACCGCCAACTTCTCGCTCGGCTACATCAAGGCCGAGTTCGACGAGTACCAGGCCTTCAACCCGGCCACCGGCCAGA CCGAGGACTTCGCCGACAGCCGCGTGTTCCAGAACACGCCCGACTGGAACGGGTCGGTGAACCTCACCTACACCCACGAC CTCGGCGACAACGGCTCGATCGCGTTCATTCCCTCGGCGTCCTACCGCTCGTCGTTCAACATGTTCGAGGTGCCTTCGAT CCTCGACCAGGACGGCTATTGGCTGGTGGACGCCAGCGTGGTGTGGACCTCGGCCGACGACAAGTACCGCGTCGGCCTGC ACGGCCGGAACCTGACCGACGAGGAGTACCGCATCGGCGGCTACAACTTCCCCGGCGGCCTGTTCGGCAACTCGGTGACG GCCTACTACGGCCCGCCGCGGACCGTGACGCTCTCGCTCGAAGCGAAGTTCTAG
Upstream 100 bases:
>100_bases CGGATCACTCAACACTGCGGCTAATTCGCCTATTGGTGAAATTGCCTGACGCCACCGGACCCAGAGGGGGATCGGCAACC GCGTCATCGGGAGGATGCAG
Downstream 100 bases:
>100_bases TATCGGCCAACGCCCGGCTCACCCGAGCCGGGCGTTTTCCTTCGCCGGAGTCTCCATGGCCCAGGACGCCCGCGCCGCCA GCGGCGGCTACCGGATCGTC
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 737; Mature: 737
Protein sequence:
>737_residues MKAFVKAALFAGAAWSAVPALAQAQVAAEEPGLVEELVVTARRREESLKDVPVAVTALSGERLAATGAVDLTTLQQSTPN TTVQVARGSNSTLISFIRGVGQQDPLWGFEPGVGLYIDDVYIARPQGAVLDIFDIERVEVLRGPQGTLYGRNTIGGAIKY VTAKIEGEPELKLKGQVGSYDQRDIVASAKGRVNDYVGVGLTWASFNRDGFGKNIVTGAEHYDKDVTAARATLEFTPTED LFFRLAGDIVTDRSNPRHGHRELPTLNVLGQPVPGGEVLDDVYDTRAGSGDHNFVEARGVSFLGEWNVNDVITLKSISAY RAGETEGTIDFDAEQAPYLDIPARYNDHQFTQELQLLYSGDRLQGVFGVYYLNATAAGAFDTVLGQLNTTTATAGHVDTE SWSVFGDVSYDVTEQLSLSVGGRYTRDEKTGQVYRQNFTGLKSPLFGNNLAVPGLLRSNFTSSDTYEKFTPRVSASYEIS PDLTGYVSYSQGFKSGGFDMRADQILTPDSADGYQPEKVQSYEGGLKGYFFDRRLTLNTAVFYAKYEDQQVTIQTPVGTS IASQVLNVGKSHMYGLEVEGSAVLADSLTANFSLGYIKAEFDEYQAFNPATGQTEDFADSRVFQNTPDWNGSVNLTYTHD LGDNGSIAFIPSASYRSSFNMFEVPSILDQDGYWLVDASVVWTSADDKYRVGLHGRNLTDEEYRIGGYNFPGGLFGNSVT AYYGPPRTVTLSLEAKF
Sequences:
>Translated_737_residues MKAFVKAALFAGAAWSAVPALAQAQVAAEEPGLVEELVVTARRREESLKDVPVAVTALSGERLAATGAVDLTTLQQSTPN TTVQVARGSNSTLISFIRGVGQQDPLWGFEPGVGLYIDDVYIARPQGAVLDIFDIERVEVLRGPQGTLYGRNTIGGAIKY VTAKIEGEPELKLKGQVGSYDQRDIVASAKGRVNDYVGVGLTWASFNRDGFGKNIVTGAEHYDKDVTAARATLEFTPTED LFFRLAGDIVTDRSNPRHGHRELPTLNVLGQPVPGGEVLDDVYDTRAGSGDHNFVEARGVSFLGEWNVNDVITLKSISAY RAGETEGTIDFDAEQAPYLDIPARYNDHQFTQELQLLYSGDRLQGVFGVYYLNATAAGAFDTVLGQLNTTTATAGHVDTE SWSVFGDVSYDVTEQLSLSVGGRYTRDEKTGQVYRQNFTGLKSPLFGNNLAVPGLLRSNFTSSDTYEKFTPRVSASYEIS PDLTGYVSYSQGFKSGGFDMRADQILTPDSADGYQPEKVQSYEGGLKGYFFDRRLTLNTAVFYAKYEDQQVTIQTPVGTS IASQVLNVGKSHMYGLEVEGSAVLADSLTANFSLGYIKAEFDEYQAFNPATGQTEDFADSRVFQNTPDWNGSVNLTYTHD LGDNGSIAFIPSASYRSSFNMFEVPSILDQDGYWLVDASVVWTSADDKYRVGLHGRNLTDEEYRIGGYNFPGGLFGNSVT AYYGPPRTVTLSLEAKF >Mature_737_residues MKAFVKAALFAGAAWSAVPALAQAQVAAEEPGLVEELVVTARRREESLKDVPVAVTALSGERLAATGAVDLTTLQQSTPN TTVQVARGSNSTLISFIRGVGQQDPLWGFEPGVGLYIDDVYIARPQGAVLDIFDIERVEVLRGPQGTLYGRNTIGGAIKY VTAKIEGEPELKLKGQVGSYDQRDIVASAKGRVNDYVGVGLTWASFNRDGFGKNIVTGAEHYDKDVTAARATLEFTPTED LFFRLAGDIVTDRSNPRHGHRELPTLNVLGQPVPGGEVLDDVYDTRAGSGDHNFVEARGVSFLGEWNVNDVITLKSISAY RAGETEGTIDFDAEQAPYLDIPARYNDHQFTQELQLLYSGDRLQGVFGVYYLNATAAGAFDTVLGQLNTTTATAGHVDTE SWSVFGDVSYDVTEQLSLSVGGRYTRDEKTGQVYRQNFTGLKSPLFGNNLAVPGLLRSNFTSSDTYEKFTPRVSASYEIS PDLTGYVSYSQGFKSGGFDMRADQILTPDSADGYQPEKVQSYEGGLKGYFFDRRLTLNTAVFYAKYEDQQVTIQTPVGTS IASQVLNVGKSHMYGLEVEGSAVLADSLTANFSLGYIKAEFDEYQAFNPATGQTEDFADSRVFQNTPDWNGSVNLTYTHD LGDNGSIAFIPSASYRSSFNMFEVPSILDQDGYWLVDASVVWTSADDKYRVGLHGRNLTDEEYRIGGYNFPGGLFGNSVT AYYGPPRTVTLSLEAKF
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 80301; Mature: 80301
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: PS00561 CBD_BACTERIAL ; PS01156 TONB_DEPENDENT_REC_2 ; PS00308 LECTIN_LEGUME_ALPHA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAFVKAALFAGAAWSAVPALAQAQVAAEEPGLVEELVVTARRREESLKDVPVAVTALSG CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC ERLAATGAVDLTTLQQSTPNTTVQVARGSNSTLISFIRGVGQQDPLWGFEPGVGLYIDDV CEEEECCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEE YIARPQGAVLDIFDIERVEVLRGPQGTLYGRNTIGGAIKYVTAKIEGEPELKLKGQVGSY EEECCCCCEEEEEECCEEHHHCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEECCCCCC DQRDIVASAKGRVNDYVGVGLTWASFNRDGFGKNIVTGAEHYDKDVTAARATLEFTPTED CCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCHH LFFRLAGDIVTDRSNPRHGHRELPTLNVLGQPVPGGEVLDDVYDTRAGSGDHNFVEARGV HHHHHHCHHEECCCCCCCCCCCCCEEHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCC SFLGEWNVNDVITLKSISAYRAGETEGTIDFDAEQAPYLDIPARYNDHQFTQELQLLYSG EEEECCCCCCEEEEEECCCEECCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHCCC DRLQGVFGVYYLNATAAGAFDTVLGQLNTTTATAGHVDTESWSVFGDVSYDVTEQLSLSV CCCCEEEEEEEEECCCCCHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCHHHEEEEC GGRYTRDEKTGQVYRQNFTGLKSPLFGNNLAVPGLLRSNFTSSDTYEKFTPRVSASYEIS CCEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCCEEEEC PDLTGYVSYSQGFKSGGFDMRADQILTPDSADGYQPEKVQSYEGGLKGYFFDRRLTLNTA CCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEEEEEEEEEEEE VFYAKYEDQQVTIQTPVGTSIASQVLNVGKSHMYGLEVEGSAVLADSLTANFSLGYIKAE EEEEEECCCEEEEECCCCHHHHHHHHHCCHHHEEEEEECCCEEEECCCCCCEEEEEEEEE FDEYQAFNPATGQTEDFADSRVFQNTPDWNGSVNLTYTHDLGDNGSIAFIPSASYRSSFN CHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCEEEEECCHHCCCCC MFEVPSILDQDGYWLVDASVVWTSADDKYRVGLHGRNLTDEEYRIGGYNFPGGLFGNSVT EEECCHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCEE AYYGPPRTVTLSLEAKF EEECCCEEEEEEEEECC >Mature Secondary Structure MKAFVKAALFAGAAWSAVPALAQAQVAAEEPGLVEELVVTARRREESLKDVPVAVTALSG CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC ERLAATGAVDLTTLQQSTPNTTVQVARGSNSTLISFIRGVGQQDPLWGFEPGVGLYIDDV CEEEECCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCEEEEEE YIARPQGAVLDIFDIERVEVLRGPQGTLYGRNTIGGAIKYVTAKIEGEPELKLKGQVGSY EEECCCCCEEEEEECCEEHHHCCCCCCEEECCCCCCEEEEEEEEECCCCCEEEECCCCCC DQRDIVASAKGRVNDYVGVGLTWASFNRDGFGKNIVTGAEHYDKDVTAARATLEFTPTED CCHHHHHHCCCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCHH LFFRLAGDIVTDRSNPRHGHRELPTLNVLGQPVPGGEVLDDVYDTRAGSGDHNFVEARGV HHHHHHCHHEECCCCCCCCCCCCCEEHCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCC SFLGEWNVNDVITLKSISAYRAGETEGTIDFDAEQAPYLDIPARYNDHQFTQELQLLYSG EEEECCCCCCEEEEEECCCEECCCCCCEEEECCCCCCEEECCCCCCCHHHHHHHHHHCCC DRLQGVFGVYYLNATAAGAFDTVLGQLNTTTATAGHVDTESWSVFGDVSYDVTEQLSLSV CCCCEEEEEEEEECCCCCHHHHHHHCCCCCEEECCCCCCCCEEEEECCCCCCHHHEEEEC GGRYTRDEKTGQVYRQNFTGLKSPLFGNNLAVPGLLRSNFTSSDTYEKFTPRVSASYEIS CCEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCCCEEEEC PDLTGYVSYSQGFKSGGFDMRADQILTPDSADGYQPEKVQSYEGGLKGYFFDRRLTLNTA CCCEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHCCCCCEEEEEEEEEEEEE VFYAKYEDQQVTIQTPVGTSIASQVLNVGKSHMYGLEVEGSAVLADSLTANFSLGYIKAE EEEEEECCCEEEEECCCCHHHHHHHHHCCHHHEEEEEECCCEEEECCCCCCEEEEEEEEE FDEYQAFNPATGQTEDFADSRVFQNTPDWNGSVNLTYTHDLGDNGSIAFIPSASYRSSFN CHHHCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEECCCCCCCEEEEECCHHCCCCC MFEVPSILDQDGYWLVDASVVWTSADDKYRVGLHGRNLTDEEYRIGGYNFPGGLFGNSVT EEECCHHHCCCCCEEEEEEEEEECCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCEE AYYGPPRTVTLSLEAKF EEECCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA