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The map label for this gene is ybjK [C]

Identifier: 197105560

GI number: 197105560

Start: 2352117

End: 2352809

Strand: Reverse

Name: ybjK [C]

Synonym: PHZ_c2097

Alternate gene names: 197105560

Gene position: 2352809-2352117 (Counterclockwise)

Preceding gene: 197105562

Following gene: 197105559

Centisome position: 58.88

GC content: 69.99

Gene sequence:

>693_bases
ATGGCGCGGGCGGACGGAAAATCGGGCGCGGCGGCGCGGGGACGGCGGCCCAAGGGGCAGGGACCGGACCTGCGGGAGTC
CATCCTGGACGCGGCCGAGGCCCTGTTCTCGCGCCACGGCTTCTACGGCGTGACCGTGCGCCAGGTGGCGTCCGAGGCCG
GCGTCGACACGGCCCTGATCCACTACTACTTCGGCGCCAAGCGCGAGCTGTTCGACAGCGTCTTCGCCCGCCGCGCCGAG
ATCCTCAACACCGCGCGCCTCGAGGCCATGCGCGCCTACAAGGCGGCTAACGCCGGGCGGCTGGAGGTGGAGGGCGTCAT
CGAGGCCTTCATCGGCCCGCTCCTGGACCTGTCGATGACCAACGACGAGGGCTGGACGAACTACTTCCGCCTCGTGGCGC
TGGTGAACAACACGCCCGCCTGGGGCGGCGAGACGATGCACCGGTTCTTCGATCCCGTGGTGCACAAGCTGATCGACACG
CTGAAGCAGGCGCTGCCCGACGCCGAGATCCGCGACCTCTACTGGTGCTACCAGTTCCTCACGGGCTCGATGATGCTGGC
GCTGTCCGAGACCGGCCGCATCGACCAGCTGTCGGACGGCCTGTGCCGCTCGACCGACCTGGAGGCGGTCCGCGCACGGC
TCTACGCCTACTGCGCCGCGGGAATCAGCGAGGTCGTCCGCCGCAAGCCGTAG

Upstream 100 bases:

>100_bases
TCAACGTCGGCGAACCGCGTTACCCCTATGGACCTTGGCCAGGGGGCTTGACCGGCGGGTTTCTGCGACCTAGCGCCGGA
TGAGGCTTGGGCGGGAGCGG

Downstream 100 bases:

>100_bases
GCCGCAAGGCCGCCAAGCGGTGCTGTGACAAAAATTCATCACCTGATCAAAAAACGGTCAGGCGGTGTCCGCCGCCCTCT
GGCGCGCCGCCCGCGGATCA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; TetR Family Regulatory Protein; Regulatory Protein Tetr; Transcription Regulator Protein; TetR Family Transcription Factor; TRANSCRIPTIONal REGULATOR TetR Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator TetR; Transcliptional Regulator TetR Family; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MARADGKSGAAARGRRPKGQGPDLRESILDAAEALFSRHGFYGVTVRQVASEAGVDTALIHYYFGAKRELFDSVFARRAE
ILNTARLEAMRAYKAANAGRLEVEGVIEAFIGPLLDLSMTNDEGWTNYFRLVALVNNTPAWGGETMHRFFDPVVHKLIDT
LKQALPDAEIRDLYWCYQFLTGSMMLALSETGRIDQLSDGLCRSTDLEAVRARLYAYCAAGISEVVRRKP

Sequences:

>Translated_230_residues
MARADGKSGAAARGRRPKGQGPDLRESILDAAEALFSRHGFYGVTVRQVASEAGVDTALIHYYFGAKRELFDSVFARRAE
ILNTARLEAMRAYKAANAGRLEVEGVIEAFIGPLLDLSMTNDEGWTNYFRLVALVNNTPAWGGETMHRFFDPVVHKLIDT
LKQALPDAEIRDLYWCYQFLTGSMMLALSETGRIDQLSDGLCRSTDLEAVRARLYAYCAAGISEVVRRKP
>Mature_229_residues
ARADGKSGAAARGRRPKGQGPDLRESILDAAEALFSRHGFYGVTVRQVASEAGVDTALIHYYFGAKRELFDSVFARRAEI
LNTARLEAMRAYKAANAGRLEVEGVIEAFIGPLLDLSMTNDEGWTNYFRLVALVNNTPAWGGETMHRFFDPVVHKLIDTL
KQALPDAEIRDLYWCYQFLTGSMMLALSETGRIDQLSDGLCRSTDLEAVRARLYAYCAAGISEVVRRKP

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25528; Mature: 25397

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARADGKSGAAARGRRPKGQGPDLRESILDAAEALFSRHGFYGVTVRQVASEAGVDTALI
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH
HYYFGAKRELFDSVFARRAEILNTARLEAMRAYKAANAGRLEVEGVIEAFIGPLLDLSMT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
NDEGWTNYFRLVALVNNTPAWGGETMHRFFDPVVHKLIDTLKQALPDAEIRDLYWCYQFL
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TGSMMLALSETGRIDQLSDGLCRSTDLEAVRARLYAYCAAGISEVVRRKP
HHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARADGKSGAAARGRRPKGQGPDLRESILDAAEALFSRHGFYGVTVRQVASEAGVDTALI
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH
HYYFGAKRELFDSVFARRAEILNTARLEAMRAYKAANAGRLEVEGVIEAFIGPLLDLSMT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
NDEGWTNYFRLVALVNNTPAWGGETMHRFFDPVVHKLIDTLKQALPDAEIRDLYWCYQFL
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
TGSMMLALSETGRIDQLSDGLCRSTDLEAVRARLYAYCAAGISEVVRRKP
HHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA