| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is fyuA [H]
Identifier: 197105486
GI number: 197105486
Start: 2265728
End: 2268208
Strand: Direct
Name: fyuA [H]
Synonym: PHZ_c2023
Alternate gene names: 197105486
Gene position: 2265728-2268208 (Clockwise)
Preceding gene: 197105485
Following gene: 197105491
Centisome position: 56.7
GC content: 68.72
Gene sequence:
>2481_bases ATGCGTACAAAACACCTGCTCCGCAGCTCGGCCCTCGTCGGCGTGATGGCTGCGGCCTTCGCCACGAGCGTCCAGGCGCA AGAAGAAACCGGCGGCCGCGAGATCGAGGAGATCGTCGTCACCGCCCAGAAGCGCGAACAGAGCCTGCAGGACGTGCCGA TCGTCGTGACCTCGGTCAGCGGCGAGCTGCTGCGCGACGCCGGCGTCCGCGACATCCGCGAACTGACCGTGCTGACGCCG GGCCTGACCGTCACCTCCACCTCGAACGAGACCATCGTGACCGCCCGCGTCCGCGGCGTCGGCACCGTGGGCGACAACCC GGGCCTGGAGAGCTCGGTCGGCGTGGTGATCGACGGCGTCTACCGCCCCCGCAACGGCGTCTCGTTCGGCGACCTGGGCG AAGTCACCCGCATCGAGGTGCTGAAGGGCCCGCAGGGCACCCTGTTCGGCAAGAACACCTCGGCCGGCGTCATCAACATC ATCACCGCCGGTCCCACCGAGGACGTGCAGGCGCAGTCTGAAGTCACCGTCGGCGACTACGAGCAATTCGGCTTCAGCGG CTCGCTGAGCGGCCCGATCACCGAAGGCGTCACCGGCCGGATCTTCGCCGCCGCCCGCCAGCGCAACGGCTACCAGGACA TCATCACCGGTCCCGGTCCGCGCGGCCAGCACGACGACAACAACCAGAACTTCTACACCGTCCGCGGCCAGCTCCAGTTC GAGCCGACCGACGACATCACCTTCCGCCTGATCGGCGACTACACCAAGCGGAACGAGGACTGCTGCGTCGGCACCCAGCT GTTCGTCGGCCAGGGCCTGGCGGGCCAGCCCGGCCGCGGCCAGATGATCGACGCGGTGCGCCCCGGCTCGCTGGACCTGA CCAGCACGCCGTTCGACCGCCTGGGCTACGCCAACCGCCCGACCGACCAGCGCGTCGAGGACCGCGGCGTCTCCGGCGAG CTGACCTGGCGCCTGGCGCCCGGCATGAGCCTGACGTCGATCACCGCCTGGCGGAAGTGGAACGCCGAGACCGGCCAGGA CAGCGACTTCACCGCCGCCGACCTCGTCTACCGGCCGAACGACGGCTCGAACAACGTCCAGTTCAAGCAGTTCTCGCAGG AGCTCCGCCTGGCGGGCGATGCGATGGACGGGCGCCTGAACTGGCTCGTCGGCGGCTTCTACGCCGAGGAGGACCTCGAT ACCCGCTCGGTGCTGAGCTACGGCACGGACTACTACGCCTACTACGCCGGCCGCGTGCTCGGCGGCGCCCCGGCCCTCAT CGGCCTGGTCCCCGGCACGGTGTTCCAGCCGGGCGCGGGGTCTGACGACCGCTACGCCCAGGACGGCAAGAGCTGGGCGC TGTTCACCAACAACTCGTTCGCCATCACCGATGCGCTCGAGCTGACCGTGGGCCTGCGCTACACTAAGGACAAGAAGACC CTGGTGACCGACTACTCCACGACGGGCTCGTCGTGCGACCAGGGCGAAGCCGCCTTCCCGATCCTCGTCGGGGCGGTGGG CGCGGCGACCGCCACGCGGATCGCCGGCGGCCTGTGCCTGAACTCGCAGAACAACGACTTCGACGAGCTGGGCCTGCTGA CCCAGAAGCGCACGGAAGAGGAAGTCACCGGCACGGCCAAGCTGGCCTACCGCTGGAACGACGACATCATGACGTATGCG TCGTACTCGCGCGGCTACAAGGCGGGCGGCTTCAACCTCGACCGCGAGCAGCTGATCACGCTGACGCCGGCCGGCACGCC GAACTTCACGGCCGACCCCGACACGAGCTTCGGCGGCGAGTTCGTCGACAGCTACGAGCTGGGCGCCAAGACGTCCTGGC TCGACAACTCGCTGCTGCTGAACGCGGCGGTGTTCTACCAGAAGTTCGAGGACTTCCAGCTGAACACCTTCGTGGGCACG GCCTTCGTCGTCGAGACGCTGCCGAAGGTGACCTCGCGCGGCGTGGACGTGGACTTCATCTACCTGCCGCCGATCGACGG CCTGACCTTCCAGGGCGGCGTGACCTACGCGGAGACCGAGATCGGCGACTTCACCGCCGCCGACCTGATCAACCCGACCC GGTTCACCAGCCTGCGCCGCCTGCCCGGCGCGCAGCTGTCGTTCGCCCCGCGCTGGTCGGCCTCGCTGGCCGGCTCGTAC GAGCGTGACGTGTTCTCGGGCCTGAAGCTCCGCGCGAACCTGTCGGGCAAGTTCACGTCCCGGTACAACACCGGCTCGGA CCTGCACCCGGTGAAGGAGCAGGACTCGATGGTGCTGGTGAACGGCCGCATCGGCATCGGCGCCCAGGACGAGAGCTGGA CCGTCGAGCTGTGGGCCAACAACCTGTTCGACAAGGAGTACGTGCAGGTCGGCTTCAACGGCCCGTACCAGGTGGACGAG GCGGTGGACGCGATCAGCGTCTACGACGCCTTCCTCGGCGCCCCGCGCACCGTGGGCGCGACGCTCCGCTTCCGGTACTA G
Upstream 100 bases:
>100_bases CGGCGCCGTTGCCGCTCCGAGCGGGCGGCCTCTACCCCAGGACCCGAGCGTGCGCCCGCGACTCCCCCCGCGGGGCATGG CTCGGGGAGACCAAGACCAA
Downstream 100 bases:
>100_bases GAAAGAGGACGGCCTGCCCCGGCAGGTCGGGCGGCCCGGAGCGATCCGGGCCGCCTTTCTTTTTGGGCTCTAGGCGAGGC GCTCGGCGTGCCAGGCCAGG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 826; Mature: 826
Protein sequence:
>826_residues MRTKHLLRSSALVGVMAAAFATSVQAQEETGGREIEEIVVTAQKREQSLQDVPIVVTSVSGELLRDAGVRDIRELTVLTP GLTVTSTSNETIVTARVRGVGTVGDNPGLESSVGVVIDGVYRPRNGVSFGDLGEVTRIEVLKGPQGTLFGKNTSAGVINI ITAGPTEDVQAQSEVTVGDYEQFGFSGSLSGPITEGVTGRIFAAARQRNGYQDIITGPGPRGQHDDNNQNFYTVRGQLQF EPTDDITFRLIGDYTKRNEDCCVGTQLFVGQGLAGQPGRGQMIDAVRPGSLDLTSTPFDRLGYANRPTDQRVEDRGVSGE LTWRLAPGMSLTSITAWRKWNAETGQDSDFTAADLVYRPNDGSNNVQFKQFSQELRLAGDAMDGRLNWLVGGFYAEEDLD TRSVLSYGTDYYAYYAGRVLGGAPALIGLVPGTVFQPGAGSDDRYAQDGKSWALFTNNSFAITDALELTVGLRYTKDKKT LVTDYSTTGSSCDQGEAAFPILVGAVGAATATRIAGGLCLNSQNNDFDELGLLTQKRTEEEVTGTAKLAYRWNDDIMTYA SYSRGYKAGGFNLDREQLITLTPAGTPNFTADPDTSFGGEFVDSYELGAKTSWLDNSLLLNAAVFYQKFEDFQLNTFVGT AFVVETLPKVTSRGVDVDFIYLPPIDGLTFQGGVTYAETEIGDFTAADLINPTRFTSLRRLPGAQLSFAPRWSASLAGSY ERDVFSGLKLRANLSGKFTSRYNTGSDLHPVKEQDSMVLVNGRIGIGAQDESWTVELWANNLFDKEYVQVGFNGPYQVDE AVDAISVYDAFLGAPRTVGATLRFRY
Sequences:
>Translated_826_residues MRTKHLLRSSALVGVMAAAFATSVQAQEETGGREIEEIVVTAQKREQSLQDVPIVVTSVSGELLRDAGVRDIRELTVLTP GLTVTSTSNETIVTARVRGVGTVGDNPGLESSVGVVIDGVYRPRNGVSFGDLGEVTRIEVLKGPQGTLFGKNTSAGVINI ITAGPTEDVQAQSEVTVGDYEQFGFSGSLSGPITEGVTGRIFAAARQRNGYQDIITGPGPRGQHDDNNQNFYTVRGQLQF EPTDDITFRLIGDYTKRNEDCCVGTQLFVGQGLAGQPGRGQMIDAVRPGSLDLTSTPFDRLGYANRPTDQRVEDRGVSGE LTWRLAPGMSLTSITAWRKWNAETGQDSDFTAADLVYRPNDGSNNVQFKQFSQELRLAGDAMDGRLNWLVGGFYAEEDLD TRSVLSYGTDYYAYYAGRVLGGAPALIGLVPGTVFQPGAGSDDRYAQDGKSWALFTNNSFAITDALELTVGLRYTKDKKT LVTDYSTTGSSCDQGEAAFPILVGAVGAATATRIAGGLCLNSQNNDFDELGLLTQKRTEEEVTGTAKLAYRWNDDIMTYA SYSRGYKAGGFNLDREQLITLTPAGTPNFTADPDTSFGGEFVDSYELGAKTSWLDNSLLLNAAVFYQKFEDFQLNTFVGT AFVVETLPKVTSRGVDVDFIYLPPIDGLTFQGGVTYAETEIGDFTAADLINPTRFTSLRRLPGAQLSFAPRWSASLAGSY ERDVFSGLKLRANLSGKFTSRYNTGSDLHPVKEQDSMVLVNGRIGIGAQDESWTVELWANNLFDKEYVQVGFNGPYQVDE AVDAISVYDAFLGAPRTVGATLRFRY >Mature_826_residues MRTKHLLRSSALVGVMAAAFATSVQAQEETGGREIEEIVVTAQKREQSLQDVPIVVTSVSGELLRDAGVRDIRELTVLTP GLTVTSTSNETIVTARVRGVGTVGDNPGLESSVGVVIDGVYRPRNGVSFGDLGEVTRIEVLKGPQGTLFGKNTSAGVINI ITAGPTEDVQAQSEVTVGDYEQFGFSGSLSGPITEGVTGRIFAAARQRNGYQDIITGPGPRGQHDDNNQNFYTVRGQLQF EPTDDITFRLIGDYTKRNEDCCVGTQLFVGQGLAGQPGRGQMIDAVRPGSLDLTSTPFDRLGYANRPTDQRVEDRGVSGE LTWRLAPGMSLTSITAWRKWNAETGQDSDFTAADLVYRPNDGSNNVQFKQFSQELRLAGDAMDGRLNWLVGGFYAEEDLD TRSVLSYGTDYYAYYAGRVLGGAPALIGLVPGTVFQPGAGSDDRYAQDGKSWALFTNNSFAITDALELTVGLRYTKDKKT LVTDYSTTGSSCDQGEAAFPILVGAVGAATATRIAGGLCLNSQNNDFDELGLLTQKRTEEEVTGTAKLAYRWNDDIMTYA SYSRGYKAGGFNLDREQLITLTPAGTPNFTADPDTSFGGEFVDSYELGAKTSWLDNSLLLNAAVFYQKFEDFQLNTFVGT AFVVETLPKVTSRGVDVDFIYLPPIDGLTFQGGVTYAETEIGDFTAADLINPTRFTSLRRLPGAQLSFAPRWSASLAGSY ERDVFSGLKLRANLSGKFTSRYNTGSDLHPVKEQDSMVLVNGRIGIGAQDESWTVELWANNLFDKEYVQVGFNGPYQVDE AVDAISVYDAFLGAPRTVGATLRFRY
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 89480; Mature: 89480
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTKHLLRSSALVGVMAAAFATSVQAQEETGGREIEEIVVTAQKREQSLQDVPIVVTSVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC GELLRDAGVRDIRELTVLTPGLTVTSTSNETIVTARVRGVGTVGDNPGLESSVGVVIDGV CHHHHHCCHHHHHHHEEECCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEE YRPRNGVSFGDLGEVTRIEVLKGPQGTLFGKNTSAGVINIITAGPTEDVQAQSEVTVGDY ECCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEECCH EQFGFSGSLSGPITEGVTGRIFAAARQRNGYQDIITGPGPRGQHDDNNQNFYTVRGQLQF HHCCCCCCCCCCCCCCCCCEEEEEHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEE EPTDDITFRLIGDYTKRNEDCCVGTQLFVGQGLAGQPGRGQMIDAVRPGSLDLTSTPFDR CCCCCEEEEEEECHHCCCCCCEECCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHH LGYANRPTDQRVEDRGVSGELTWRLAPGMSLTSITAWRKWNAETGQDSDFTAADLVYRPN CCCCCCCCCCHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCC DGSNNVQFKQFSQELRLAGDAMDGRLNWLVGGFYAEEDLDTRSVLSYGTDYYAYYAGRVL CCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHCCCCEEEEEHHHHC GGAPALIGLVPGTVFQPGAGSDDRYAQDGKSWALFTNNSFAITDALELTVGLRYTKDKKT CCCCEEEEECCCCEECCCCCCCCCHHCCCCEEEEEECCCEEEEEEEEEEEEEEEECCCCE LVTDYSTTGSSCDQGEAAFPILVGAVGAATATRIAGGLCLNSQNNDFDELGLLTQKRTEE EEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCHH EVTGTAKLAYRWNDDIMTYASYSRGYKAGGFNLDREQLITLTPAGTPNFTADPDTSFGGE HHCCEEEEEEEECCCEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC FVDSYELGAKTSWLDNSLLLNAAVFYQKFEDFQLNTFVGTAFVVETLPKVTSRGVDVDFI HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEE YLPPIDGLTFQGGVTYAETEIGDFTAADLINPTRFTSLRRLPGAQLSFAPRWSASLAGSY EECCCCCEEECCCCEEEECCCCCCHHHHHCCCHHHHHHHHCCCCCEEECCCCCHHHCCCH ERDVFSGLKLRANLSGKFTSRYNTGSDLHPVKEQDSMVLVNGRIGIGAQDESWTVELWAN HHHHHCCEEEEEECCCEEEECCCCCCCCCCCCCCCCEEEEECEEECCCCCCCEEEEEECC NLFDKEYVQVGFNGPYQVDEAVDAISVYDAFLGAPRTVGATLRFRY CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC >Mature Secondary Structure MRTKHLLRSSALVGVMAAAFATSVQAQEETGGREIEEIVVTAQKREQSLQDVPIVVTSVS CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEEEECC GELLRDAGVRDIRELTVLTPGLTVTSTSNETIVTARVRGVGTVGDNPGLESSVGVVIDGV CHHHHHCCHHHHHHHEEECCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEE YRPRNGVSFGDLGEVTRIEVLKGPQGTLFGKNTSAGVINIITAGPTEDVQAQSEVTVGDY ECCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCEEEEEECCCCCCCCCCCCCEECCH EQFGFSGSLSGPITEGVTGRIFAAARQRNGYQDIITGPGPRGQHDDNNQNFYTVRGQLQF HHCCCCCCCCCCCCCCCCCEEEEEHHHCCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEE EPTDDITFRLIGDYTKRNEDCCVGTQLFVGQGLAGQPGRGQMIDAVRPGSLDLTSTPFDR CCCCCEEEEEEECHHCCCCCCEECCCCEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHH LGYANRPTDQRVEDRGVSGELTWRLAPGMSLTSITAWRKWNAETGQDSDFTAADLVYRPN CCCCCCCCCCHHHHCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCCEEEEEEECCC DGSNNVQFKQFSQELRLAGDAMDGRLNWLVGGFYAEEDLDTRSVLSYGTDYYAYYAGRVL CCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHCCCCEEEEEHHHHC GGAPALIGLVPGTVFQPGAGSDDRYAQDGKSWALFTNNSFAITDALELTVGLRYTKDKKT CCCCEEEEECCCCEECCCCCCCCCHHCCCCEEEEEECCCEEEEEEEEEEEEEEEECCCCE LVTDYSTTGSSCDQGEAAFPILVGAVGAATATRIAGGLCLNSQNNDFDELGLLTQKRTEE EEEECCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCEEEECCCCCCHHHHHHHHHHCCHH EVTGTAKLAYRWNDDIMTYASYSRGYKAGGFNLDREQLITLTPAGTPNFTADPDTSFGGE HHCCEEEEEEEECCCEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC FVDSYELGAKTSWLDNSLLLNAAVFYQKFEDFQLNTFVGTAFVVETLPKVTSRGVDVDFI HHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEE YLPPIDGLTFQGGVTYAETEIGDFTAADLINPTRFTSLRRLPGAQLSFAPRWSASLAGSY EECCCCCEEECCCCEEEECCCCCCHHHHHCCCHHHHHHHHCCCCCEEECCCCCHHHCCCH ERDVFSGLKLRANLSGKFTSRYNTGSDLHPVKEQDSMVLVNGRIGIGAQDESWTVELWAN HHHHHCCEEEEEECCCEEEECCCCCCCCCCCCCCCCEEEEECEEECCCCCCCEEEEEECC NLFDKEYVQVGFNGPYQVDEAVDAISVYDAFLGAPRTVGATLRFRY CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA