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The map label for this gene is phzR [H]

Identifier: 197105485

GI number: 197105485

Start: 2264726

End: 2265493

Strand: Direct

Name: phzR [H]

Synonym: PHZ_c2022

Alternate gene names: 197105485

Gene position: 2264726-2265493 (Clockwise)

Preceding gene: 197105479

Following gene: 197105486

Centisome position: 56.67

GC content: 76.04

Gene sequence:

>768_bases
ATGTTCGCCCCCACGGGCTCCTCCGTCCGGCTTGAAGAAGCGGCCGCCCTCGCGCGCGAGGTGGCCGCGCTGGGCGCCCG
GATCGGCCTGCCCTATGTGGCCGCCACCGACGACATCGGCAGCCCCCGCCCCATGCGCGGCCCCGACGGACGGCCGCTCG
CCGAGACCGCCTTCCGCTGGCTGGATCCCGACCTGCGCTACTGGGAGGACCGCGGGTTCGCCCTGCGGGCGGCGTTCATC
CGCGCCTCGCGGGTGTGCGCCGAGCCCTTCTACTTCCAGGGCGGCCGGCTGCGGTCGTGGCGCACCAACCCCGCCCTGGA
CGCCATCGCCGCCGAGGGCATCGAGACCTTCGGCGTCGGCGCGGCGATCGTCGCGCCCGCCTACCTGCCCGGCGGGTCGA
TCGGGGCGGTCACCTGGGCCTCGCCGGACGCGGACGTGGACACAGGCTCGGTGTTCGCCGCCCGCGCGGCCGAGCTGCAC
GCCCTGGCCCTGCGGTTCGTGGCCACCTACGCCGAGGCGACCGGGGCGCTCGTGGGCACGTCCCCGGCGCACCTGACGCG
GCGCGAGATCCAGGTGCTGAAATGGGCCGCGGCGGGCAAGACCGACGCCGAGATCGGCCGCATCGTCTCGATCTCCACCC
CGACGGTGCGCTTCCACATCACCAACGCCTCGCGCAAGCTGGGCGTCGCCGGGCGGGCGCAGGCGGTGCACCGCGCCGCC
ACGCTCGGCTACCTCGGCGCCGGGGACCCGCCGCAAGGACGCGCCTGA

Upstream 100 bases:

>100_bases
CTAGTTTCGGCCCGGCTGGAGCCGGGTCCGTCGACGGAGCTTGCGGAGGGCGGCGCGAGCGAACAAGCTATCGAAAGTGA
TAGGGTCAGGGCTCGCCCCC

Downstream 100 bases:

>100_bases
CTCGCACGCCGCGACGGCCTTTTGACAGACCTGCGTTTTGCCATCCGTGGCCGGATTAAGGCGGCGGCGGGCGGAACCGC
GTCGTTCGCGTGGCGGCGGG

Product: transcriptional regulator,LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MFAPTGSSVRLEEAAALAREVAALGARIGLPYVAATDDIGSPRPMRGPDGRPLAETAFRWLDPDLRYWEDRGFALRAAFI
RASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFGVGAAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELH
ALALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAA
TLGYLGAGDPPQGRA

Sequences:

>Translated_255_residues
MFAPTGSSVRLEEAAALAREVAALGARIGLPYVAATDDIGSPRPMRGPDGRPLAETAFRWLDPDLRYWEDRGFALRAAFI
RASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFGVGAAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELH
ALALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAA
TLGYLGAGDPPQGRA
>Mature_255_residues
MFAPTGSSVRLEEAAALAREVAALGARIGLPYVAATDDIGSPRPMRGPDGRPLAETAFRWLDPDLRYWEDRGFALRAAFI
RASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFGVGAAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELH
ALALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAA
TLGYLGAGDPPQGRA

Specific function: Positive regulator of phenazine antibiotic production. May activate the phenazine biosynthetic genes by binding to a DNA sequence upstream of them, or to an intermediate gene which, in turn, interacts with them [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 26807; Mature: 26807

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAPTGSSVRLEEAAALAREVAALGARIGLPYVAATDDIGSPRPMRGPDGRPLAETAFRW
CCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
LDPDLRYWEDRGFALRAAFIRASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFGVG
CCCCHHHHHCCCEEEHHHHHHHHHHHCCCCEECCCCEECCCCCCHHHHHHHHCHHHHCCC
AAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELHALALRFVATYAEATGALVGT
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
SPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAA
CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHH
TLGYLGAGDPPQGRA
HHCCCCCCCCCCCCC
>Mature Secondary Structure
MFAPTGSSVRLEEAAALAREVAALGARIGLPYVAATDDIGSPRPMRGPDGRPLAETAFRW
CCCCCCCCEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
LDPDLRYWEDRGFALRAAFIRASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFGVG
CCCCHHHHHCCCEEEHHHHHHHHHHHCCCCEECCCCEECCCCCCHHHHHHHHCHHHHCCC
AAIVAPAYLPGGSIGAVTWASPDADVDTGSVFAARAAELHALALRFVATYAEATGALVGT
HHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEC
SPAHLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAA
CHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHH
TLGYLGAGDPPQGRA
HHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9573209 [H]