Click here to switch to the map view.

The map label for this gene is yecS [H]

Identifier: 197105460

GI number: 197105460

Start: 2230883

End: 2231536

Strand: Reverse

Name: yecS [H]

Synonym: PHZ_c1997

Alternate gene names: 197105460

Gene position: 2231536-2230883 (Counterclockwise)

Preceding gene: 197105461

Following gene: 197105459

Centisome position: 55.84

GC content: 67.43

Gene sequence:

>654_bases
ATGGGAGACTTCCTGAGCCAGGCCATCAGCTTCCTGCCCATCCTCGGGCGGGGGATGGGCGTCACCGTCCTGATCAGCCT
GGGCGCCCTGGCGCTCAGCCTCCTCCTTGGCCTCGGCTGGGCGCTGCTCGGCCAGTCCAGGTTTGCGGCGCTGCGGGGGA
TCAGCCGCACGTCCGTCGTGGTGCTCCGCGGCATCCCGATCATCGTGCAGCTGTTCTACGTCTACTTCGTGCTGCCCGAG
TTCGGCCTCTCGCTCGATGCGATGTGGGCCGGGATCATCGGCCTGGGCGTCGCCTACTCGGTCTATCAGGCGGAGAACTT
CCGCGCGGGCATCCAGTCCGTGGACCCGGCCCTGGTGGAGGCCGCGCGGTCGCTGGGCATGAGCGAGGGGATGATCATGC
GGCGGGTGATCCTGCCGCTGGCGATCCGCACCGCCCTGCCGCCGTTCGGCAACACCTCGATCATGCTCCTAAAGGACTCC
TCGATCGCCTCGACGATCACGGTGGCCGAACTGACCCGCGCCGGCCAGCTGCTGGCCATCTCCACCTTCCAGAACATGAC
CGTCTACACGCTGATCGCGCTCCTCTACCTGGCCATGAGCCTGCCGCTGACCTTCCTGGTCCACCGGCTCGAAAAGCGGA
TGGCGCGGCGATGA

Upstream 100 bases:

>100_bases
TGCGGAAGGACGATCGCGCGCTGCTCGACCGGATCAACACGGCGATCGCGGCGATCCGCGGCTCGACCCTCCCGCCCATC
CTCGCCAAGTGGGGACTCTG

Downstream 100 bases:

>100_bases
TCCGGGTGAGCGGCCTGAGCAAGGCCTTCGGCGCCAATCACGTCCTCCGGGACGTCAGCTTCGAAGTCGCGCAGGGCGAG
GTGGTCTGCCTCATCGGGCC

Product: cystine ABC tranporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MGDFLSQAISFLPILGRGMGVTVLISLGALALSLLLGLGWALLGQSRFAALRGISRTSVVVLRGIPIIVQLFYVYFVLPE
FGLSLDAMWAGIIGLGVAYSVYQAENFRAGIQSVDPALVEAARSLGMSEGMIMRRVILPLAIRTALPPFGNTSIMLLKDS
SIASTITVAELTRAGQLLAISTFQNMTVYTLIALLYLAMSLPLTFLVHRLEKRMARR

Sequences:

>Translated_217_residues
MGDFLSQAISFLPILGRGMGVTVLISLGALALSLLLGLGWALLGQSRFAALRGISRTSVVVLRGIPIIVQLFYVYFVLPE
FGLSLDAMWAGIIGLGVAYSVYQAENFRAGIQSVDPALVEAARSLGMSEGMIMRRVILPLAIRTALPPFGNTSIMLLKDS
SIASTITVAELTRAGQLLAISTFQNMTVYTLIALLYLAMSLPLTFLVHRLEKRMARR
>Mature_216_residues
GDFLSQAISFLPILGRGMGVTVLISLGALALSLLLGLGWALLGQSRFAALRGISRTSVVVLRGIPIIVQLFYVYFVLPEF
GLSLDAMWAGIIGLGVAYSVYQAENFRAGIQSVDPALVEAARSLGMSEGMIMRRVILPLAIRTALPPFGNTSIMLLKDSS
IASTITVAELTRAGQLLAISTFQNMTVYTLIALLYLAMSLPLTFLVHRLEKRMARR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=217, Percent_Identity=40.0921658986175, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1787030, Length=208, Percent_Identity=37.5, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI1787087, Length=231, Percent_Identity=25.974025974026, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=27.3584905660377, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1786873, Length=212, Percent_Identity=27.8301886792453, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788645, Length=166, Percent_Identity=33.7349397590361, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786874, Length=228, Percent_Identity=30.2631578947368, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082239, Length=192, Percent_Identity=31.25, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787086, Length=214, Percent_Identity=23.8317757009346, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994930, Length=125, Percent_Identity=34.4, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23463; Mature: 23331

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDFLSQAISFLPILGRGMGVTVLISLGALALSLLLGLGWALLGQSRFAALRGISRTSVV
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VLRGIPIIVQLFYVYFVLPEFGLSLDAMWAGIIGLGVAYSVYQAENFRAGIQSVDPALVE
HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AARSLGMSEGMIMRRVILPLAIRTALPPFGNTSIMLLKDSSIASTITVAELTRAGQLLAI
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEE
STFQNMTVYTLIALLYLAMSLPLTFLVHRLEKRMARR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GDFLSQAISFLPILGRGMGVTVLISLGALALSLLLGLGWALLGQSRFAALRGISRTSVV
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
VLRGIPIIVQLFYVYFVLPEFGLSLDAMWAGIIGLGVAYSVYQAENFRAGIQSVDPALVE
HHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
AARSLGMSEGMIMRRVILPLAIRTALPPFGNTSIMLLKDSSIASTITVAELTRAGQLLAI
HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEE
STFQNMTVYTLIALLYLAMSLPLTFLVHRLEKRMARR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]