| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
Click here to switch to the map view.
The map label for this gene is dhs [H]
Identifier: 197105449
GI number: 197105449
Start: 2218616
End: 2220001
Strand: Reverse
Name: dhs [H]
Synonym: PHZ_c1986
Alternate gene names: 197105449
Gene position: 2220001-2218616 (Counterclockwise)
Preceding gene: 197105450
Following gene: 197105448
Centisome position: 55.55
GC content: 69.26
Gene sequence:
>1386_bases ATGACCGAGCACTGGACGCCTGCATCCTGGAGATCGAAGCCCGCCAAGCACCTGCCGACCGACTATCCGGATCCGGCCGA GCTCGCGCGCGTGGAACAGACCCTTCGCAAGATGCCGCCGCTGGTGTTTGCGGGCGAGGCGCGCCGGCTGAAGAGCCTGC TGGGCGACGTGGCCGAGGGCCGCGCCTTCCTGCTGCAGGGCGGCGACTGCGCCGAGAGCTTCAAGGAATTCCACGCCGAC AATATCCGCGACCTGTTCCGCCTGATCCTGCAGATGGCGGTGGTGCTGACCTTCGCGGGCGGCAAGCCGGTGGTGAAGGT GGGCCGCATGGCCGGCCAGTTCGGCAAGCCGCGCTCCTCGCCGATCGAGACGATCGACGGCGTCGAGCTGCCGTCGTACC GCGGCGACAACATCAACGGCATGGAGTTCACGCCGCAGGCCCGCACGCCGGACCCGCAGCGGCTGATCCAGGCCTACGGC CAGTCGTCGGCGACGCTGAACCTGCTGCGCGCCTTCGCGGGCGGCGGCTACGCCGACCTCTACAACATCCACCGCTGGAC CCTGGGCTTCGTCAACGACAGCCCGCAGGGCGCGCGCTACCGCGAGCTGTCCGAGAAGATCTCGGAGGCGCTGACCTTCA TGGCCGCCATCGGGGTCACGCCCGAGAGCCATCCCGAGATGCACCGGGTCGAGTTCTTCACCAGCCACGAAGGCCTGCTG CTGGGCTTCGAGGAGGCGATGACCCGCGTCGATAGCACCTCGGGCGAGTGGTACGACACCTCGGCCCACCTGCTGTGGAT CGGGGAGCGCACCCGCCAGCTCGACGGCGCCCACGTGGAGTACTTCCGGGGCATCAAGAACCCCATCGGCGTGAAGGTCG GCCCGACCATGGAGCCGGACGAGCTGCTGCGCCTGATCGACGTGCTGAACCCGAAGAACGAGGGCGGCCGCCTGACGCTC TACGGCCGCTTCGGCTACGACAAGATCGAGGACCGCCTGCCGCGCCTGCTGCGGGCCACCAAGGCCGGCGGCCGCAACGT GGTCTGGGCCATCGATCCGATGCACGGCAACACCCTGACGGCGGCCTCGGGCTACAAGACCCGGCCGTTCGACCGCATCC TCTCCGAGGTGAAGTCCTTCGTGGACACCTGCAAGGGCGAGGGCGTGCACCCGGGCGGCGTGCACCTGGAGATGACCGGC CAGAACGTCACCGAGTGCCTGGGCGGCGCCCGGGCGCTGGCCGAGGGCGACCTGGCCGACCGCTACCACACGCACTGCGA TCCGCGGCTGAACGGCGAGCAGGCGCTGGAGCTGGCGTTCCTGGTGGCCGAGAAGCTGAAGGAAGACCGGGTCGACCTCT CCAGGCGGGTCGCCGTCAACATCTGA
Upstream 100 bases:
>100_bases CCGCAGCAAAATCATCGACCACAGCGGCCTTCTCGGGGTAGAAGCCCGCTTCCGCCGCCGGGGGCGCACGCCCATGTTTG GCAGGCGTGGAGTTGGAAGA
Downstream 100 bases:
>100_bases GCCGTGGCCGCCGGGCCACTCCGACGTAGGAAGCTCCGGCGGGCGGCGGACCCGGCTTGCGGGCGCGGTCCGGCCGCGCG ACTGTCCGCGGCTTCTTTGA
Product: phospho-2-dehydro-3-deoxyheptonate aldolase, class II
Products: NA
Alternate protein names: 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; DAHP synthase; Phospho-2-keto-3-deoxyheptonate aldolase [H]
Number of amino acids: Translated: 461; Mature: 460
Protein sequence:
>461_residues MTEHWTPASWRSKPAKHLPTDYPDPAELARVEQTLRKMPPLVFAGEARRLKSLLGDVAEGRAFLLQGGDCAESFKEFHAD NIRDLFRLILQMAVVLTFAGGKPVVKVGRMAGQFGKPRSSPIETIDGVELPSYRGDNINGMEFTPQARTPDPQRLIQAYG QSSATLNLLRAFAGGGYADLYNIHRWTLGFVNDSPQGARYRELSEKISEALTFMAAIGVTPESHPEMHRVEFFTSHEGLL LGFEEAMTRVDSTSGEWYDTSAHLLWIGERTRQLDGAHVEYFRGIKNPIGVKVGPTMEPDELLRLIDVLNPKNEGGRLTL YGRFGYDKIEDRLPRLLRATKAGGRNVVWAIDPMHGNTLTAASGYKTRPFDRILSEVKSFVDTCKGEGVHPGGVHLEMTG QNVTECLGGARALAEGDLADRYHTHCDPRLNGEQALELAFLVAEKLKEDRVDLSRRVAVNI
Sequences:
>Translated_461_residues MTEHWTPASWRSKPAKHLPTDYPDPAELARVEQTLRKMPPLVFAGEARRLKSLLGDVAEGRAFLLQGGDCAESFKEFHAD NIRDLFRLILQMAVVLTFAGGKPVVKVGRMAGQFGKPRSSPIETIDGVELPSYRGDNINGMEFTPQARTPDPQRLIQAYG QSSATLNLLRAFAGGGYADLYNIHRWTLGFVNDSPQGARYRELSEKISEALTFMAAIGVTPESHPEMHRVEFFTSHEGLL LGFEEAMTRVDSTSGEWYDTSAHLLWIGERTRQLDGAHVEYFRGIKNPIGVKVGPTMEPDELLRLIDVLNPKNEGGRLTL YGRFGYDKIEDRLPRLLRATKAGGRNVVWAIDPMHGNTLTAASGYKTRPFDRILSEVKSFVDTCKGEGVHPGGVHLEMTG QNVTECLGGARALAEGDLADRYHTHCDPRLNGEQALELAFLVAEKLKEDRVDLSRRVAVNI >Mature_460_residues TEHWTPASWRSKPAKHLPTDYPDPAELARVEQTLRKMPPLVFAGEARRLKSLLGDVAEGRAFLLQGGDCAESFKEFHADN IRDLFRLILQMAVVLTFAGGKPVVKVGRMAGQFGKPRSSPIETIDGVELPSYRGDNINGMEFTPQARTPDPQRLIQAYGQ SSATLNLLRAFAGGGYADLYNIHRWTLGFVNDSPQGARYRELSEKISEALTFMAAIGVTPESHPEMHRVEFFTSHEGLLL GFEEAMTRVDSTSGEWYDTSAHLLWIGERTRQLDGAHVEYFRGIKNPIGVKVGPTMEPDELLRLIDVLNPKNEGGRLTLY GRFGYDKIEDRLPRLLRATKAGGRNVVWAIDPMHGNTLTAASGYKTRPFDRILSEVKSFVDTCKGEGVHPGGVHLEMTGQ NVTECLGGARALAEGDLADRYHTHCDPRLNGEQALELAFLVAEKLKEDRVDLSRRVAVNI
Specific function: Unknown
COG id: COG3200
COG function: function code E; 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II DAHP synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002480 [H]
Pfam domain/function: PF01474 DAHP_synth_2 [H]
EC number: =2.5.1.54 [H]
Molecular weight: Translated: 51194; Mature: 51063
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHWTPASWRSKPAKHLPTDYPDPAELARVEQTLRKMPPLVFAGEARRLKSLLGDVAEG CCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCC RAFLLQGGDCAESFKEFHADNIRDLFRLILQMAVVLTFAGGKPVVKVGRMAGQFGKPRSS CEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC PIETIDGVELPSYRGDNINGMEFTPQARTPDPQRLIQAYGQSSATLNLLRAFAGGGYADL CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHH YNIHRWTLGFVNDSPQGARYRELSEKISEALTFMAAIGVTPESHPEMHRVEFFTSHEGLL HHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCEE LGFEEAMTRVDSTSGEWYDTSAHLLWIGERTRQLDGAHVEYFRGIKNPIGVKVGPTMEPD EEHHHHHHHHCCCCCCEEECCCEEEEEECHHHHCCCCHHHHHHHCCCCCCEEECCCCCHH ELLRLIDVLNPKNEGGRLTLYGRFGYDKIEDRLPRLLRATKAGGRNVVWAIDPMHGNTLT HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE AASGYKTRPFDRILSEVKSFVDTCKGEGVHPGGVHLEMTGQNVTECLGGARALAEGDLAD ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHH RYHTHCDPRLNGEQALELAFLVAEKLKEDRVDLSRRVAVNI HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECC >Mature Secondary Structure TEHWTPASWRSKPAKHLPTDYPDPAELARVEQTLRKMPPLVFAGEARRLKSLLGDVAEG CCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHCC RAFLLQGGDCAESFKEFHADNIRDLFRLILQMAVVLTFAGGKPVVKVGRMAGQFGKPRSS CEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC PIETIDGVELPSYRGDNINGMEFTPQARTPDPQRLIQAYGQSSATLNLLRAFAGGGYADL CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHH YNIHRWTLGFVNDSPQGARYRELSEKISEALTFMAAIGVTPESHPEMHRVEFFTSHEGLL HHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEEECCCCEE LGFEEAMTRVDSTSGEWYDTSAHLLWIGERTRQLDGAHVEYFRGIKNPIGVKVGPTMEPD EEHHHHHHHHCCCCCCEEECCCEEEEEECHHHHCCCCHHHHHHHCCCCCCEEECCCCCHH ELLRLIDVLNPKNEGGRLTLYGRFGYDKIEDRLPRLLRATKAGGRNVVWAIDPMHGNTLT HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEE AASGYKTRPFDRILSEVKSFVDTCKGEGVHPGGVHLEMTGQNVTECLGGARALAEGDLAD ECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCHHH RYHTHCDPRLNGEQALELAFLVAEKLKEDRVDLSRRVAVNI HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12000953; 8760910 [H]