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The map label for this gene is lppB [H]

Identifier: 197105420

GI number: 197105420

Start: 2190972

End: 2192378

Strand: Reverse

Name: lppB [H]

Synonym: PHZ_c1957

Alternate gene names: 197105420

Gene position: 2192378-2190972 (Counterclockwise)

Preceding gene: 197105421

Following gene: 197105418

Centisome position: 54.86

GC content: 75.98

Gene sequence:

>1407_bases
ATGACGCACCTTCCTACGCGCCCGATCCTGAGCCTGCTGGCCGCCAGCGCTCTGACCGCGTGCGCCAGCCCGAACTTTCC
GATCGAGCCGCCGGTCATTCAGACGCCGCCGCCGCCCTCGGCCGCGCGCGCGCCGGCCGAGCCGCCCATGGCGCGGACGC
AGGAGCCGGCGCCGGAAGCGCCGCGCCCGACCGAGCGGGTGGAGTCGCGTCCGCTGGACATGCCGCCGGCCGCGCCCCGG
GCCGAGTCGCGGGCGGAGTCGCGTCCGTCCGCCCCTGCCGCGACCCCGCCGGCAGAGCCGACCTACCGCACCGTCACGAC
CCGCAGCGTCACGGGCCGGGTGGTCGATGTGGACGGCCCGCCGACGGTCTACGAGGTCAAGTCCGGCGACAACCTCGAGA
AGATCGCCCGCAAGCTCGACACCACGGTCGAGCAGCTCAAGAAGGACAACAAGCTCAAGTCCGACGTGATCCGTCCGGGC
CAGGAGCTGAAGGGGCCGCGCAGCGAGGCGAAGGCCTACACGGTGGAGTCGGGCGACACGCTCTACGCCATCGCCCGCCG
GTTCGGCGTCTCGGCCGGCGCGATCGCCGGAGAGAACGACATGGCCATCGAGGCCACCCTGCGGCCGGGCCAGCACCTGC
GCCTGCCGTCCGGGTTCCGGGACCGCGGCCCGATCACCTCGACCCAGCGGGTGCGCGTCGATCCGCCTCCGCCGCCGCCG
CAGCGGCCCGCGCCGGCTCCGGTGCAGACCGCTCAGGCGACCCCGCCGCCGCCGCCTCCGCCGCCGCGCGAGGAGCCGCC
GGCGCGCCTGCCGAGCCGCCCGCAGCCCTACACCGGCCGGGCCCAGCCCACGCCGGCCCAGCCGCCGCGCGCGACGACGC
CCGCCCCGACGCCGGCGCCCGCGCAGACCGCGCCGGCCCGGCCGGCTCCGCCGCCCGCCTCGACGCCGCGCATCGTCGGG
GCCCCCGTCGCCTCGGCCCAGCCCAGCGACAGCGAGATTTCGCAACTCGGCCGCGGCCGCTTCCTCTGGCCCGTTCGCGG
CGACATCCTGTCGGGCTTCGGCCCCAAGGGCCCCAGCCAGCGCAACGACGGGGTGAACATCCAGGCCAAGGCCGGCGAGC
CCGTACGTGCGGCCGCGGCCGGCGACGTGGTCTACGCCGGCGACCAGGTTCCCGGCTTCGGCAACCTGGTGCTGATCAAG
CACGCCGACGGCTGGGTGACCGCCTACGGCCACCTCGCGCGGGTCGACGTGAAGATGCAGCAGAAGGTCACCCAGGGGCA
GCAGATCGGCCAGGTCGGCCAGACCGGCGGCGTCTCCGAGCCGCAGCTGCATTTCGAGGTCCGCTACGCGCCCACCCCCG
AGGAACGCGCGCGGCCGATCGATCCGGCCCTCGTCCTGCCGCGCTAG

Upstream 100 bases:

>100_bases
AGGCTGCGGCGGTTTGCGGGTTGGCGGGGGCGCCGGCCCGCCGCCATCATTCCCGCCCACGCCCCGTTGATTCTCTTGGA
CCTCCACACCCGGAGCGGCG

Downstream 100 bases:

>100_bases
GGGCGTCTACAGCGGCAGGGGCTTGCCCAGCTCGCCGGCGCGGTCGCGGATGAACTGCCAGGCGACCCGGCCCGAGCGGC
CGCCGCGGGCCTGGGCCCAC

Product: peptidase, M23/M37 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MTHLPTRPILSLLAASALTACASPNFPIEPPVIQTPPPPSAARAPAEPPMARTQEPAPEAPRPTERVESRPLDMPPAAPR
AESRAESRPSAPAATPPAEPTYRTVTTRSVTGRVVDVDGPPTVYEVKSGDNLEKIARKLDTTVEQLKKDNKLKSDVIRPG
QELKGPRSEAKAYTVESGDTLYAIARRFGVSAGAIAGENDMAIEATLRPGQHLRLPSGFRDRGPITSTQRVRVDPPPPPP
QRPAPAPVQTAQATPPPPPPPPREEPPARLPSRPQPYTGRAQPTPAQPPRATTPAPTPAPAQTAPARPAPPPASTPRIVG
APVASAQPSDSEISQLGRGRFLWPVRGDILSGFGPKGPSQRNDGVNIQAKAGEPVRAAAAGDVVYAGDQVPGFGNLVLIK
HADGWVTAYGHLARVDVKMQQKVTQGQQIGQVGQTGGVSEPQLHFEVRYAPTPEERARPIDPALVLPR

Sequences:

>Translated_468_residues
MTHLPTRPILSLLAASALTACASPNFPIEPPVIQTPPPPSAARAPAEPPMARTQEPAPEAPRPTERVESRPLDMPPAAPR
AESRAESRPSAPAATPPAEPTYRTVTTRSVTGRVVDVDGPPTVYEVKSGDNLEKIARKLDTTVEQLKKDNKLKSDVIRPG
QELKGPRSEAKAYTVESGDTLYAIARRFGVSAGAIAGENDMAIEATLRPGQHLRLPSGFRDRGPITSTQRVRVDPPPPPP
QRPAPAPVQTAQATPPPPPPPPREEPPARLPSRPQPYTGRAQPTPAQPPRATTPAPTPAPAQTAPARPAPPPASTPRIVG
APVASAQPSDSEISQLGRGRFLWPVRGDILSGFGPKGPSQRNDGVNIQAKAGEPVRAAAAGDVVYAGDQVPGFGNLVLIK
HADGWVTAYGHLARVDVKMQQKVTQGQQIGQVGQTGGVSEPQLHFEVRYAPTPEERARPIDPALVLPR
>Mature_467_residues
THLPTRPILSLLAASALTACASPNFPIEPPVIQTPPPPSAARAPAEPPMARTQEPAPEAPRPTERVESRPLDMPPAAPRA
ESRAESRPSAPAATPPAEPTYRTVTTRSVTGRVVDVDGPPTVYEVKSGDNLEKIARKLDTTVEQLKKDNKLKSDVIRPGQ
ELKGPRSEAKAYTVESGDTLYAIARRFGVSAGAIAGENDMAIEATLRPGQHLRLPSGFRDRGPITSTQRVRVDPPPPPPQ
RPAPAPVQTAQATPPPPPPPPREEPPARLPSRPQPYTGRAQPTPAQPPRATTPAPTPAPAQTAPARPAPPPASTPRIVGA
PVASAQPSDSEISQLGRGRFLWPVRGDILSGFGPKGPSQRNDGVNIQAKAGEPVRAAAAGDVVYAGDQVPGFGNLVLIKH
ADGWVTAYGHLARVDVKMQQKVTQGQQIGQVGQTGGVSEPQLHFEVRYAPTPEERARPIDPALVLPR

Specific function: May be a virulence determinant [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=128, Percent_Identity=37.5, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI87082174, Length=132, Percent_Identity=39.3939393939394, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI87082297, Length=112, Percent_Identity=37.5, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 49520; Mature: 49389

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHLPTRPILSLLAASALTACASPNFPIEPPVIQTPPPPSAARAPAEPPMARTQEPAPEA
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRPTERVESRPLDMPPAAPRAESRAESRPSAPAATPPAEPTYRTVTTRSVTGRVVDVDGP
CCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCC
PTVYEVKSGDNLEKIARKLDTTVEQLKKDNKLKSDVIRPGQELKGPRSEAKAYTVESGDT
CCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCHHHCCEEEECCCCH
LYAIARRFGVSAGAIAGENDMAIEATLRPGQHLRLPSGFRDRGPITSTQRVRVDPPPPPP
HHHHHHHHCCCCCCEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEECCCCCCCC
QRPAPAPVQTAQATPPPPPPPPREEPPARLPSRPQPYTGRAQPTPAQPPRATTPAPTPAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AQTAPARPAPPPASTPRIVGAPVASAQPSDSEISQLGRGRFLWPVRGDILSGFGPKGPSQ
CCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCEEEEECHHHHHCCCCCCCCC
RNDGVNIQAKAGEPVRAAAAGDVVYAGDQVPGFGNLVLIKHADGWVTAYGHLARVDVKMQ
CCCCEEEEECCCCCEEECCCCCEEEECCCCCCCCCEEEEEECCCEEEECCCEEEEHHHHH
QKVTQGQQIGQVGQTGGVSEPQLHFEVRYAPTPEERARPIDPALVLPR
HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHCCCCCCEEECCC
>Mature Secondary Structure 
THLPTRPILSLLAASALTACASPNFPIEPPVIQTPPPPSAARAPAEPPMARTQEPAPEA
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PRPTERVESRPLDMPPAAPRAESRAESRPSAPAATPPAEPTYRTVTTRSVTGRVVDVDGP
CCCHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCEEEEEEEECCCEEEECCCC
PTVYEVKSGDNLEKIARKLDTTVEQLKKDNKLKSDVIRPGQELKGPRSEAKAYTVESGDT
CCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHCCCHHHCCEEEECCCCH
LYAIARRFGVSAGAIAGENDMAIEATLRPGQHLRLPSGFRDRGPITSTQRVRVDPPPPPP
HHHHHHHHCCCCCCEECCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEECCCCCCCC
QRPAPAPVQTAQATPPPPPPPPREEPPARLPSRPQPYTGRAQPTPAQPPRATTPAPTPAP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
AQTAPARPAPPPASTPRIVGAPVASAQPSDSEISQLGRGRFLWPVRGDILSGFGPKGPSQ
CCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCEEEEECHHHHHCCCCCCCCC
RNDGVNIQAKAGEPVRAAAAGDVVYAGDQVPGFGNLVLIKHADGWVTAYGHLARVDVKMQ
CCCCEEEEECCCCCEEECCCCCEEEECCCCCCCCCEEEEEECCCEEEECCCEEEEHHHHH
QKVTQGQQIGQVGQTGGVSEPQLHFEVRYAPTPEERARPIDPALVLPR
HHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]