| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is omp85 [H]
Identifier: 197105235
GI number: 197105235
Start: 1981675
End: 1984056
Strand: Reverse
Name: omp85 [H]
Synonym: PHZ_c1772
Alternate gene names: 197105235
Gene position: 1984056-1981675 (Counterclockwise)
Preceding gene: 197105236
Following gene: 197105234
Centisome position: 49.65
GC content: 67.25
Gene sequence:
>2382_bases ATGCTCAAGACCCGCGCCCGCAGCGCCGCGCTCGCCTCCGGCCTTGCCCTGCTTCTGGGCTCGACCGCCCTCGTCGCGCC GACGCTAGCCTTCGCCCAGCAGGAACAGGGCGGGGTGATCCAGCGGATCCTGGTGCAGGGCAACGAACGGATCGAGCAGG CGACCGTCGTCTCGTACCTGCCGATCCAGGTCGGGGATCAGGTCGATCCCGAGCGCATCGACCTGGCGCTGAAGGCGCTG TTCCGCACCGACCTCTTCGCCGACGTGAAGATCGACTTCCAGAACGGCGACCTGATCATCACCGTGGAGGAGAACCCGAT CATCAACCGGGTGATCTTCGAGGGGAACTCGGGTCTGAAGGAGGACAAGCTGCGCGACGAGGTGTCGATCCGTCCGCGCG GCATCTTCACCCGCGCCAAGGTGCAGAGCGACGTCCAGCGGATCGTCGAGCTCTACCGCCGCTCGGGGCGGATCTCGGCC CAGGTCGAGCCGCAGATCATCGAGCTGCCGCAGAAGCGGGTGGACCTGATCTTCAAGATCGACGAGGGCCCCAAGAGCGG CATCCTGTCGGTCAACTTCCTCGGCAACCGGGCCTTCTCGGACAACGACCTGCGCGACGTGGTCGTGACCGAGGAGAGCC GCTGGTACAAGTTCTTCTCGAACAACGCGAACTACGATCCGGACCGGCTCGAGTACGACAAGGAGCAGCTGCGCAAGCAC TACCGCAATCGCGGCTACTACGACTTCCGCGTCTCCTCGGCCGTGGCCGAGCTGGCTCCGGACAAGAACGGCTTCGTCGT CACCTACACCCTGGACGAAGGTCCGCAGTACGAGTTCGGCGAGATCAAGGTCGAGACCGAGCTGCAGAAGCTCGACCAGG CGGTGCTGGCCTCGCTGCTGCCGATCCGCTCGGGCGAGACCTACCAGGACGAGGTCATCGAGCAGGCCACCGACGCGCTG ACCTTCGCGGCGGGCGCCGCCGGCTTCGCGTTCGTGGACGTGCGCCCGAACTACCAGGCCAACCGCGAGACCCGGAAAGT GGACGTGACGTTCCAGGTCCGCGAGGGACCGCGCGTGTACGTCGACCGCATCGACATCGTCGGCAACACCCAGACGCTGG ACTACGTGATCCGTCGCGAGATGAGCGTGGTGGAGGGCGACGCCTACAACCGGGCGCTCGTCGACCGCTCCCGCCGGCAG GTCCGCGGCCTGGGCTTCTTCAAGGACGTCGAGATCACCGAGACCCCGGGTTCGGCGCCGGACCGCACCGCGCTGCAGGT GCGGGTTGAGGAGCAGCCCACGGGCGAGCTGTCGTTCAGCGCCGGCTATTCGTCGGTGGACCAGCTCGTGCTCGACCTCG GCGTCACCCAGCGCAACTTCCGCGGCCGCGGCCAGGACGTGCGTGCGCGCGTCTCGGTGGGCTCGCTGCGCCAGCAGCTG GACTTCTCCTTCACCGAGCCGCGGTTCCTGGGCCGGGACGTGGCGGCCGGCATCGACCTCTACGGCTACCGCTACGACCT GTCGGACTACACCTCGTACGAGACGGCCACGGTCGGAACGACGCTGCGGGCCAACTTCCCGCTCAGCCTGAACGCCCGCG GGTCGCTGCGCTATTCGCTGCGCCAGGACGAGATCAAGATCGACGACTTCTACTGCGATCCGAGCCAGCCGCTGCTGGCG CTGGCGATCTGCGGTCAGCGGGGCTCGTTCATCACCTCGCTGGTGGGCTACGGCATCCGGTTCGACCGGCGGAACGACTA CCTGAACCCGACCCGCGGCTATTACGTGGACTTCGTGCAGGACTTCGCCGGCCTGGCGGGTGACGTGAACTACGTCCGCA CCGAGGCCGAGGGCGGCTGGTACCACGGCTTCACCCGCGACTTCATCCTGAGCCTCACCGGCTCGGCCGGCTACGTCGAG GGCTGGGGCGGCGACAACGTCCGGATCAACGATCGCTTCTACAAGGGCGGCAACACCTTCCGTGGCTTCGAGACCGCTGG CATCGGCCCGCGCGACCTCTCGTTCACCCGCGCCGACTCGCTGGGCGGCAAGGCCTACGCCATCGGCACGGTCGAGCTGA CGGTGCCGACCTTCCTGCCCGAGCAGTACGGCATCAAGGCCGCGCTGTTCTCGGACTTCGGCACCCTGGGTCTCCTCGAC AAGGAGGACAAGCAGTGCCCGCCGCCGGGCACCGCCGAGTGCCCGCTGGGCGCGCGGGACCCCAACGTCCAGGACGACCT GTCCCTGCGGGCGTCGGCGGGCCTCAGCATCTTCTGGCGTTCGCCCATGGGTCCGATCAGGTTCGACTTCAGCCGTGTTT TGGCCAAAGAGGACTACGACAAGACCGAGACCTTCCGGTTCTCCACCTCAACCAGGTTCTAG
Upstream 100 bases:
>100_bases TGTTGTTCGCGACTTGGAACGATTTGCAGCGCCTGCGTGTGTTCAATCTGTTCGGCGGCCTATTCTCCTAGGCCCTCGGT CTCACAAAACGGCTGATTCG
Downstream 100 bases:
>100_bases GAAACATATGAACTTCAAGACCTTCACCGCGGCCGGATGCGCCGCGACCGCCGCTCTGGCGCTGGCCGGCGCGGCCAACG CCCAGGCCGTCGCCCAGACC
Product: outer membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 793; Mature: 793
Protein sequence:
>793_residues MLKTRARSAALASGLALLLGSTALVAPTLAFAQQEQGGVIQRILVQGNERIEQATVVSYLPIQVGDQVDPERIDLALKAL FRTDLFADVKIDFQNGDLIITVEENPIINRVIFEGNSGLKEDKLRDEVSIRPRGIFTRAKVQSDVQRIVELYRRSGRISA QVEPQIIELPQKRVDLIFKIDEGPKSGILSVNFLGNRAFSDNDLRDVVVTEESRWYKFFSNNANYDPDRLEYDKEQLRKH YRNRGYYDFRVSSAVAELAPDKNGFVVTYTLDEGPQYEFGEIKVETELQKLDQAVLASLLPIRSGETYQDEVIEQATDAL TFAAGAAGFAFVDVRPNYQANRETRKVDVTFQVREGPRVYVDRIDIVGNTQTLDYVIRREMSVVEGDAYNRALVDRSRRQ VRGLGFFKDVEITETPGSAPDRTALQVRVEEQPTGELSFSAGYSSVDQLVLDLGVTQRNFRGRGQDVRARVSVGSLRQQL DFSFTEPRFLGRDVAAGIDLYGYRYDLSDYTSYETATVGTTLRANFPLSLNARGSLRYSLRQDEIKIDDFYCDPSQPLLA LAICGQRGSFITSLVGYGIRFDRRNDYLNPTRGYYVDFVQDFAGLAGDVNYVRTEAEGGWYHGFTRDFILSLTGSAGYVE GWGGDNVRINDRFYKGGNTFRGFETAGIGPRDLSFTRADSLGGKAYAIGTVELTVPTFLPEQYGIKAALFSDFGTLGLLD KEDKQCPPPGTAECPLGARDPNVQDDLSLRASAGLSIFWRSPMGPIRFDFSRVLAKEDYDKTETFRFSTSTRF
Sequences:
>Translated_793_residues MLKTRARSAALASGLALLLGSTALVAPTLAFAQQEQGGVIQRILVQGNERIEQATVVSYLPIQVGDQVDPERIDLALKAL FRTDLFADVKIDFQNGDLIITVEENPIINRVIFEGNSGLKEDKLRDEVSIRPRGIFTRAKVQSDVQRIVELYRRSGRISA QVEPQIIELPQKRVDLIFKIDEGPKSGILSVNFLGNRAFSDNDLRDVVVTEESRWYKFFSNNANYDPDRLEYDKEQLRKH YRNRGYYDFRVSSAVAELAPDKNGFVVTYTLDEGPQYEFGEIKVETELQKLDQAVLASLLPIRSGETYQDEVIEQATDAL TFAAGAAGFAFVDVRPNYQANRETRKVDVTFQVREGPRVYVDRIDIVGNTQTLDYVIRREMSVVEGDAYNRALVDRSRRQ VRGLGFFKDVEITETPGSAPDRTALQVRVEEQPTGELSFSAGYSSVDQLVLDLGVTQRNFRGRGQDVRARVSVGSLRQQL DFSFTEPRFLGRDVAAGIDLYGYRYDLSDYTSYETATVGTTLRANFPLSLNARGSLRYSLRQDEIKIDDFYCDPSQPLLA LAICGQRGSFITSLVGYGIRFDRRNDYLNPTRGYYVDFVQDFAGLAGDVNYVRTEAEGGWYHGFTRDFILSLTGSAGYVE GWGGDNVRINDRFYKGGNTFRGFETAGIGPRDLSFTRADSLGGKAYAIGTVELTVPTFLPEQYGIKAALFSDFGTLGLLD KEDKQCPPPGTAECPLGARDPNVQDDLSLRASAGLSIFWRSPMGPIRFDFSRVLAKEDYDKTETFRFSTSTRF >Mature_793_residues MLKTRARSAALASGLALLLGSTALVAPTLAFAQQEQGGVIQRILVQGNERIEQATVVSYLPIQVGDQVDPERIDLALKAL FRTDLFADVKIDFQNGDLIITVEENPIINRVIFEGNSGLKEDKLRDEVSIRPRGIFTRAKVQSDVQRIVELYRRSGRISA QVEPQIIELPQKRVDLIFKIDEGPKSGILSVNFLGNRAFSDNDLRDVVVTEESRWYKFFSNNANYDPDRLEYDKEQLRKH YRNRGYYDFRVSSAVAELAPDKNGFVVTYTLDEGPQYEFGEIKVETELQKLDQAVLASLLPIRSGETYQDEVIEQATDAL TFAAGAAGFAFVDVRPNYQANRETRKVDVTFQVREGPRVYVDRIDIVGNTQTLDYVIRREMSVVEGDAYNRALVDRSRRQ VRGLGFFKDVEITETPGSAPDRTALQVRVEEQPTGELSFSAGYSSVDQLVLDLGVTQRNFRGRGQDVRARVSVGSLRQQL DFSFTEPRFLGRDVAAGIDLYGYRYDLSDYTSYETATVGTTLRANFPLSLNARGSLRYSLRQDEIKIDDFYCDPSQPLLA LAICGQRGSFITSLVGYGIRFDRRNDYLNPTRGYYVDFVQDFAGLAGDVNYVRTEAEGGWYHGFTRDFILSLTGSAGYVE GWGGDNVRINDRFYKGGNTFRGFETAGIGPRDLSFTRADSLGGKAYAIGTVELTVPTFLPEQYGIKAALFSDFGTLGLLD KEDKQCPPPGTAECPLGARDPNVQDDLSLRASAGLSIFWRSPMGPIRFDFSRVLAKEDYDKTETFRFSTSTRF
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=826, Percent_Identity=27.9661016949153, Blast_Score=286, Evalue=4e-78, Organism=Drosophila melanogaster, GI45552629, Length=351, Percent_Identity=24.7863247863248, Blast_Score=76, Evalue=9e-14,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 88886; Mature: 88886
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKTRARSAALASGLALLLGSTALVAPTLAFAQQEQGGVIQRILVQGNERIEQATVVSYL CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHEEEEEEE PIQVGDQVDPERIDLALKALFRTDLFADVKIDFQNGDLIITVEENPIINRVIFEGNSGLK CEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCC EDKLRDEVSIRPRGIFTRAKVQSDVQRIVELYRRSGRISAQVEPQIIELPQKRVDLIFKI HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCEEEEEEE DEGPKSGILSVNFLGNRAFSDNDLRDVVVTEESRWYKFFSNNANYDPDRLEYDKEQLRKH CCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCHHHHHHH YRNRGYYDFRVSSAVAELAPDKNGFVVTYTLDEGPQYEFGEIKVETELQKLDQAVLASLL HHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHH PIRSGETYQDEVIEQATDALTFAAGAAGFAFVDVRPNYQANRETRKVDVTFQVREGPRVY CCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEE VDRIDIVGNTQTLDYVIRREMSVVEGDAYNRALVDRSRRQVRGLGFFKDVEITETPGSAP EEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC DRTALQVRVEEQPTGELSFSAGYSSVDQLVLDLGVTQRNFRGRGQDVRARVSVGSLRQQL CCEEEEEEEECCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHH DFSFTEPRFLGRDVAAGIDLYGYRYDLSDYTSYETATVGTTLRANFPLSLNARGSLRYSL CCCCCCCHHHCCHHHCCCEEEEEEECCCCCCCCCEEEECEEEEECCCEEECCCCCEEEEE RQDEIKIDDFYCDPSQPLLALAICGQRGSFITSLVGYGIRFDRRNDYLNPTRGYYVDFVQ ECCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHH DFAGLAGDVNYVRTEAEGGWYHGFTRDFILSLTGSAGYVEGWGGDNVRINDRFYKGGNTF HHHHCCCCCEEEEEECCCCEECCCCCEEEEEECCCCCEEECCCCCEEEECCEEECCCCCC RGFETAGIGPRDLSFTRADSLGGKAYAIGTVELTVPTFLPEQYGIKAALFSDFGTLGLLD CCCEECCCCCCCCCEEECCCCCCCEEEEEEEEEEECCCCCHHHCCEEEEHHCCCCCCCCC KEDKQCPPPGTAECPLGARDPNVQDDLSLRASAGLSIFWRSPMGPIRFDFSRVLAKEDYD CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCC KTETFRFSTSTRF CCCEEEEECCCCC >Mature Secondary Structure MLKTRARSAALASGLALLLGSTALVAPTLAFAQQEQGGVIQRILVQGNERIEQATVVSYL CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHEEEEEEE PIQVGDQVDPERIDLALKALFRTDLFADVKIDFQNGDLIITVEENPIINRVIFEGNSGLK CEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCEEEEEEECCCCCC EDKLRDEVSIRPRGIFTRAKVQSDVQRIVELYRRSGRISAQVEPQIIELPQKRVDLIFKI HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCCCEEEEEEE DEGPKSGILSVNFLGNRAFSDNDLRDVVVTEESRWYKFFSNNANYDPDRLEYDKEQLRKH CCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCCEEEEECCCCCCCHHHHHCCHHHHHHH YRNRGYYDFRVSSAVAELAPDKNGFVVTYTLDEGPQYEFGEIKVETELQKLDQAVLASLL HHCCCEEEEEHHHHHHHHCCCCCCEEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHH PIRSGETYQDEVIEQATDALTFAAGAAGFAFVDVRPNYQANRETRKVDVTFQVREGPRVY CCCCCCCHHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCEEE VDRIDIVGNTQTLDYVIRREMSVVEGDAYNRALVDRSRRQVRGLGFFKDVEITETPGSAP EEEEEEECCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCC DRTALQVRVEEQPTGELSFSAGYSSVDQLVLDLGVTQRNFRGRGQDVRARVSVGSLRQQL CCEEEEEEEECCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHHHHHH DFSFTEPRFLGRDVAAGIDLYGYRYDLSDYTSYETATVGTTLRANFPLSLNARGSLRYSL CCCCCCCHHHCCHHHCCCEEEEEEECCCCCCCCCEEEECEEEEECCCEEECCCCCEEEEE RQDEIKIDDFYCDPSQPLLALAICGQRGSFITSLVGYGIRFDRRNDYLNPTRGYYVDFVQ ECCCEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHH DFAGLAGDVNYVRTEAEGGWYHGFTRDFILSLTGSAGYVEGWGGDNVRINDRFYKGGNTF HHHHCCCCCEEEEEECCCCEECCCCCEEEEEECCCCCEEECCCCCEEEECCEEECCCCCC RGFETAGIGPRDLSFTRADSLGGKAYAIGTVELTVPTFLPEQYGIKAALFSDFGTLGLLD CCCEECCCCCCCCCEEECCCCCCCEEEEEEEEEEECCCCCHHHCCEEEEHHCCCCCCCCC KEDKQCPPPGTAECPLGARDPNVQDDLSLRASAGLSIFWRSPMGPIRFDFSRVLAKEDYD CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHHHCCCC KTETFRFSTSTRF CCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]