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The map label for this gene is perR [H]

Identifier: 197105134

GI number: 197105134

Start: 1876218

End: 1877156

Strand: Reverse

Name: perR [H]

Synonym: PHZ_c1671

Alternate gene names: 197105134

Gene position: 1877156-1876218 (Counterclockwise)

Preceding gene: 197105137

Following gene: 197105133

Centisome position: 46.97

GC content: 73.16

Gene sequence:

>939_bases
ATGGTGGCGCCGACGTACCTCAGATCGCTCCAGGCGCTGGAGCTGGCGGTCCGGAAGGGCTCTTTCATCGCCGCCGCAGA
GGCGCTGGGGATCACGCCCGCCGCGGTCGGCCAGCGAGTGAAGGCGCTGGAGGACTACCTGGGCGTCGAACTGTTGACCC
GCGGGCGCTCGGGCCTGCGGCCGGCCCCTGGCCTCGTCCCGGCGCTGGCGCATCTGAACCGCGGGTTCGAGGAACTGGCG
GCGGCGGCGCGGGAGCTTGAGCTGCAGCGGGGCCATGAGCTGCACCTGGCGGCGGCCTCCGACTTCGTCGACCTCTGGCT
GGCCCCCAGGCTGGAGCGGTTCCGGGCGGCGCACCCGAACATCCTCTTCAACATCAACGGCGAGGGCGAGGCGCCCCACC
GCATCGGCCGCGTCGACTGCGAGATCAGCTACGGTCCGCCGCGCGACGCCCCCAACTCCGACCTGCTGTTCCGCGACTAT
GTGCTGCCGGTCACCTCGCCCGAGAATGTCGAGCGCACCGCCGCTATCGCGCGCGAGATCCGGCTGGAAGGCTTTCCGCT
CGTCCACCTCGACTTCTACAAGGACGACCCCGCCGGGCTTTCCTGGCCGGATTGGGTGGCGGCCAACGCCGTCCAGCGCA
GCGCGCCCGAGCGCGGCATGCGCTTTCGGCGGATCACGGCGGCGCTGGACGCGGTCCGCGCCGACGCCGGCGTCACGCTG
TGCGGCATGGCCCTGATCGGCGACCGGCTGGACGCCGGCGAGATCGGGCTGCCGTATCCGATATCCACCGGTCGCTGGAG
CGCCCACGGCTTCCACGCCCGCTTCCGCGCCGATGTCGACGGCCGCCGGCCGGTGCAGCGGTTCCGCGAATGGCTCCTGG
GCGAGGCCCGCGCCACGCGCGGCTGGCTGGCGGGCGCGGTGGGCGAGGCGCCCGACTAG

Upstream 100 bases:

>100_bases
CTCGTGCACTTCCCTCGATGACCTCAGTGTCGCGTCGCTCGCAGAACGCTGCAATCTAAACAATCTGGCCATCACTAAAG
GTTTTGCTTAGTAAGACTCC

Downstream 100 bases:

>100_bases
CGGCTGTTCGGCCCCGCCTTGTCGCGCAGCGGCTTTCCGGCCATGAACGCACCCGAATGAGCGTCACCCTCAAGCTCGCC
ACGTCCCTCGACGGGCGGAT

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: Peroxide resistance protein perR [H]

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MVAPTYLRSLQALELAVRKGSFIAAAEALGITPAAVGQRVKALEDYLGVELLTRGRSGLRPAPGLVPALAHLNRGFEELA
AAARELELQRGHELHLAAASDFVDLWLAPRLERFRAAHPNILFNINGEGEAPHRIGRVDCEISYGPPRDAPNSDLLFRDY
VLPVTSPENVERTAAIAREIRLEGFPLVHLDFYKDDPAGLSWPDWVAANAVQRSAPERGMRFRRITAALDAVRADAGVTL
CGMALIGDRLDAGEIGLPYPISTGRWSAHGFHARFRADVDGRRPVQRFREWLLGEARATRGWLAGAVGEAPD

Sequences:

>Translated_312_residues
MVAPTYLRSLQALELAVRKGSFIAAAEALGITPAAVGQRVKALEDYLGVELLTRGRSGLRPAPGLVPALAHLNRGFEELA
AAARELELQRGHELHLAAASDFVDLWLAPRLERFRAAHPNILFNINGEGEAPHRIGRVDCEISYGPPRDAPNSDLLFRDY
VLPVTSPENVERTAAIAREIRLEGFPLVHLDFYKDDPAGLSWPDWVAANAVQRSAPERGMRFRRITAALDAVRADAGVTL
CGMALIGDRLDAGEIGLPYPISTGRWSAHGFHARFRADVDGRRPVQRFREWLLGEARATRGWLAGAVGEAPD
>Mature_312_residues
MVAPTYLRSLQALELAVRKGSFIAAAEALGITPAAVGQRVKALEDYLGVELLTRGRSGLRPAPGLVPALAHLNRGFEELA
AAARELELQRGHELHLAAASDFVDLWLAPRLERFRAAHPNILFNINGEGEAPHRIGRVDCEISYGPPRDAPNSDLLFRDY
VLPVTSPENVERTAAIAREIRLEGFPLVHLDFYKDDPAGLSWPDWVAANAVQRSAPERGMRFRRITAALDAVRADAGVTL
CGMALIGDRLDAGEIGLPYPISTGRWSAHGFHARFRADVDGRRPVQRFREWLLGEARATRGWLAGAVGEAPD

Specific function: Apparent regulatory gene involved in peroxide resistance in stationary phase [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786448, Length=298, Percent_Identity=27.8523489932886, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788706, Length=308, Percent_Identity=27.5974025974026, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789173, Length=298, Percent_Identity=26.510067114094, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34125; Mature: 34125

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAPTYLRSLQALELAVRKGSFIAAAEALGITPAAVGQRVKALEDYLGVELLTRGRSGLR
CCCHHHHHHHHHHHHHHHCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAPGLVPALAHLNRGFEELAAAARELELQRGHELHLAAASDFVDLWLAPRLERFRAAHPN
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCC
ILFNINGEGEAPHRIGRVDCEISYGPPRDAPNSDLLFRDYVLPVTSPENVERTAAIAREI
EEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
RLEGFPLVHLDFYKDDPAGLSWPDWVAANAVQRSAPERGMRFRRITAALDAVRADAGVTL
HHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHH
CGMALIGDRLDAGEIGLPYPISTGRWSAHGFHARFRADVDGRRPVQRFREWLLGEARATR
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
GWLAGAVGEAPD
HHHHHCCCCCCC
>Mature Secondary Structure
MVAPTYLRSLQALELAVRKGSFIAAAEALGITPAAVGQRVKALEDYLGVELLTRGRSGLR
CCCHHHHHHHHHHHHHHHCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAPGLVPALAHLNRGFEELAAAARELELQRGHELHLAAASDFVDLWLAPRLERFRAAHPN
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCC
ILFNINGEGEAPHRIGRVDCEISYGPPRDAPNSDLLFRDYVLPVTSPENVERTAAIAREI
EEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHH
RLEGFPLVHLDFYKDDPAGLSWPDWVAANAVQRSAPERGMRFRRITAALDAVRADAGVTL
HHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHH
CGMALIGDRLDAGEIGLPYPISTGRWSAHGFHARFRADVDGRRPVQRFREWLLGEARATR
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
GWLAGAVGEAPD
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]