| Definition | Phenylobacterium zucineum HLK1, complete genome. |
|---|---|
| Accession | NC_011144 |
| Length | 3,996,255 |
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The map label for this gene is cex [H]
Identifier: 197105061
GI number: 197105061
Start: 1804463
End: 1805653
Strand: Direct
Name: cex [H]
Synonym: PHZ_c1598
Alternate gene names: 197105061
Gene position: 1804463-1805653 (Clockwise)
Preceding gene: 197105057
Following gene: 197105070
Centisome position: 45.15
GC content: 74.73
Gene sequence:
>1191_bases GTGCCGCCCAGGTCCTCCGCGCCCGCCGACGCCCCTGACCCCGCCCTGGAGATCGCCAGGGGGCGCACCATCGCCCGGCG CGGCCTGCTCGCGTCCGCCGCCGCGGCCGCTGCGGCGCCGGCGACGTTCGCCTGCGGCCAGACGCGGCGGGCGGGCCGGC CGCTGCACGAGCTGGCCAGCGCCTCGGGCCGCTTCTACGGCGCGGCGGCCCTCCTGCGGGAGGTGCGGCCGGACTCGCCC GTGCGGGCCCTGCTGCAGCGGGACTGCGGACTGCTGGTCCCGGAGGTCGAGCTGAACTGGGACCACCTGGCCCAGCCCGC CGACCACCTGCGCATGGAGGAGTACGCCGCCCACGCCCGCGACATGGGCAAGCCGCTGCACGGCCACACCCTGCTGTGGC ACCGCAGCGTGCCCGCCTGGGCGCAGGAGCTGCTGCGGACGGCGCCCGACTGGGGGATCGTCGCCGCGCACATCCGCTCG ACGATCCGGCGCTACGGGCAGGGGATCGCCTACTGGGAGGTGGTCAACGAGCCGATCGACACCGGCTATCGCCCCGACGG CCTGCGCGGGAGCCTGTTCCTGGAGGCGTTCGGGCCCGACTACATCCGCCGGGCGCTGGAGGAGGCGGCCGCCGCGGCTC CGGCGGCGAAGCTGCTGATCAACGAGTTCAGCCTGGACTACGACATTCCGGTCGAGCGCGAGCGGCGGCGTCACCTGCTG CGCCTGCTGGAGCGGCTGCTGAAGGCCGGCGTGCCGCTGCACGGCCTGGGGGTCCAAGGCCACCTCGACCTGCAGAAGCG GCCGTTCTCGGCGCGGGTGTTCGAAGCGTTCCTGGCCGAGGTCGCCGGGATGGGGCTGGACATCGTCATCACCGAGCTCG ACGTGCGCGAGGCCGACCTGATCCAGCCGCCGCAGGTGCGCGACCGCCTCGTGGCCGAGCACGCCAAGGCCTACCTGGAC GTCGCCCTCGATCAGCCGGCGACGAAGGGCGTCATCACCTGGGGGATCACCGATCGGCATTCCTGGCTGGAGCTGGGCGA GGCGGACCTGGCCCGCTTCCCGGGCGCCTGGCAGGACGGCACCAGCCCGGGGCTGAACCGCGGCCTGCCGTTCGATTCCG ACCTGCGGGCCAAGCCGATGTACTACGCCCTCGCCGCGGCGTTCCAGGGCAGGGCGCTGGCGGGCGGCTAG
Upstream 100 bases:
>100_bases GATCGTCGGGACGCGCGCGCCCCAGATCATGATCGCCGGATAGGATCCGTAGTTGCAGATGAGGGGGACGGCGCCCACGC GGGCGGGTTAGCCTTCGGTC
Downstream 100 bases:
>100_bases GAAGCCGGCTTGCCGAACAGGGCCACCCGTACGCCGTCGGTCGTGAGGCTCCAGCCGAAGCGGGCCGCAATCCAGCCCAG CGTCCGGGGGCGGTAGAAGG
Product: twin-arginine translocation pathway signal
Products: NA
Alternate protein names: Exoglucanase; 1,4-beta-cellobiohydrolase; Beta-1,4-glycanase CEX; Exocellobiohydrolase; Endo-1,4-beta-xylanase B; Xylanase B [H]
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MPPRSSAPADAPDPALEIARGRTIARRGLLASAAAAAAAPATFACGQTRRAGRPLHELASASGRFYGAAALLREVRPDSP VRALLQRDCGLLVPEVELNWDHLAQPADHLRMEEYAAHARDMGKPLHGHTLLWHRSVPAWAQELLRTAPDWGIVAAHIRS TIRRYGQGIAYWEVVNEPIDTGYRPDGLRGSLFLEAFGPDYIRRALEEAAAAAPAAKLLINEFSLDYDIPVERERRRHLL RLLERLLKAGVPLHGLGVQGHLDLQKRPFSARVFEAFLAEVAGMGLDIVITELDVREADLIQPPQVRDRLVAEHAKAYLD VALDQPATKGVITWGITDRHSWLELGEADLARFPGAWQDGTSPGLNRGLPFDSDLRAKPMYYALAAAFQGRALAGG
Sequences:
>Translated_396_residues MPPRSSAPADAPDPALEIARGRTIARRGLLASAAAAAAAPATFACGQTRRAGRPLHELASASGRFYGAAALLREVRPDSP VRALLQRDCGLLVPEVELNWDHLAQPADHLRMEEYAAHARDMGKPLHGHTLLWHRSVPAWAQELLRTAPDWGIVAAHIRS TIRRYGQGIAYWEVVNEPIDTGYRPDGLRGSLFLEAFGPDYIRRALEEAAAAAPAAKLLINEFSLDYDIPVERERRRHLL RLLERLLKAGVPLHGLGVQGHLDLQKRPFSARVFEAFLAEVAGMGLDIVITELDVREADLIQPPQVRDRLVAEHAKAYLD VALDQPATKGVITWGITDRHSWLELGEADLARFPGAWQDGTSPGLNRGLPFDSDLRAKPMYYALAAAFQGRALAGG >Mature_395_residues PPRSSAPADAPDPALEIARGRTIARRGLLASAAAAAAAPATFACGQTRRAGRPLHELASASGRFYGAAALLREVRPDSPV RALLQRDCGLLVPEVELNWDHLAQPADHLRMEEYAAHARDMGKPLHGHTLLWHRSVPAWAQELLRTAPDWGIVAAHIRST IRRYGQGIAYWEVVNEPIDTGYRPDGLRGSLFLEAFGPDYIRRALEEAAAAAPAAKLLINEFSLDYDIPVERERRRHLLR LLERLLKAGVPLHGLGVQGHLDLQKRPFSARVFEAFLAEVAGMGLDIVITELDVREADLIQPPQVRDRLVAEHAKAYLDV ALDQPATKGVITWGITDRHSWLELGEADLARFPGAWQDGTSPGLNRGLPFDSDLRAKPMYYALAAAFQGRALAGG
Specific function: The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes:(1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the dissaccharide cellobiose from the non-reducing e
COG id: COG3693
COG function: function code G; Beta-1,4-xylanase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CBM2 (carbohydrate binding type-2) domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008965 - InterPro: IPR012291 - InterPro: IPR018366 - InterPro: IPR001919 - InterPro: IPR001000 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00553 CBM_2; PF00331 Glyco_hydro_10 [H]
EC number: =3.2.1.91; =3.2.1.8 [H]
Molecular weight: Translated: 43397; Mature: 43266
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: PS00591 GLYCOSYL_HYDROL_F10
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPPRSSAPADAPDPALEIARGRTIARRGLLASAAAAAAAPATFACGQTRRAGRPLHELAS CCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCCHHHHHH ASGRFYGAAALLREVRPDSPVRALLQRDCGLLVPEVELNWDHLAQPADHLRMEEYAAHAR HCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHH DMGKPLHGHTLLWHRSVPAWAQELLRTAPDWGIVAAHIRSTIRRYGQGIAYWEVVNEPID HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEHHHCCHHH TGYRPDGLRGSLFLEAFGPDYIRRALEEAAAAAPAAKLLINEFSLDYDIPVERERRRHLL CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHH RLLERLLKAGVPLHGLGVQGHLDLQKRPFSARVFEAFLAEVAGMGLDIVITELDVREADL HHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHCC IQPPQVRDRLVAEHAKAYLDVALDQPATKGVITWGITDRHSWLELGEADLARFPGAWQDG CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCHHHHHHCCCCCCCC TSPGLNRGLPFDSDLRAKPMYYALAAAFQGRALAGG CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PPRSSAPADAPDPALEIARGRTIARRGLLASAAAAAAAPATFACGQTRRAGRPLHELAS CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHCCCCHHHHHH ASGRFYGAAALLREVRPDSPVRALLQRDCGLLVPEVELNWDHLAQPADHLRMEEYAAHAR HCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCEECCHHHHCCCHHHHHHHHHHHHHH DMGKPLHGHTLLWHRSVPAWAQELLRTAPDWGIVAAHIRSTIRRYGQGIAYWEVVNEPID HCCCCCCCCEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEHHHCCHHH TGYRPDGLRGSLFLEAFGPDYIRRALEEAAAAAPAAKLLINEFSLDYDIPVERERRRHLL CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHH RLLERLLKAGVPLHGLGVQGHLDLQKRPFSARVFEAFLAEVAGMGLDIVITELDVREADL HHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHCC IQPPQVRDRLVAEHAKAYLDVALDQPATKGVITWGITDRHSWLELGEADLARFPGAWQDG CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCHHHHHHCCCCCCCC TSPGLNRGLPFDSDLRAKPMYYALAAAFQGRALAGG CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3096818; 1678739; 1761039; 7918478; 8564541; 9537990; 9731776; 7766609; 7910761; 10995222 [H]